mRNA_H-paniculata_contig581.13409.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig581.13409.1
Unique NamemRNA_H-paniculata_contig581.13409.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: A0A6H5JA52_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA52_9PHAE)

HSP 1 Score: 396 bits (1018), Expect = 3.800e-135
Identity = 200/223 (89.69%), Postives = 206/223 (92.38%), Query Frame = 3 
Query:   48 MIRLKKKQDXXXAAEAA--MDVEEADSSNAAAQPKGGEEKTAAKQLHVLGIGGRRAKRGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            MIRLKKKQD   AAEAA  M+++E   SNAAAQPK  EEK A K LHVLGIGGRRAKRGS+KA GTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKV+V+PDSGFWKGASY FTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTL GCVM GETFQRLI
Sbjct:    1 MIRLKKKQDDEKAAEAAAAMEIDEETPSNAAAQPKADEEKAAGK-LHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 222
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: A0A835YZU8_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZU8_9STRA)

HSP 1 Score: 298 bits (763), Expect = 9.180e-97
Identity = 140/178 (78.65%), Postives = 157/178 (88.20%), Query Frame = 3 
Query:  177 LHVLGIGGRRAKRGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            + +LGIGGRR K+ + KA   KKTPGEIRIQKDIA+LDGG+VA ITFP+PNNL  F+V V PDSG+WKGASY+FTFTIP  YPHDPPKVLC TKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYR+NI++F+R V+RTL GC M G+ F RL+
Sbjct:   32 VKLLGIGGRRTKK-TGKAP-PKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 207
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: A0A6V1TYK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TYK4_HETAK)

HSP 1 Score: 290 bits (743), Expect = 2.180e-93
Identity = 149/233 (63.95%), Postives = 179/233 (76.82%), Query Frame = 3 
Query:   48 MIRLKKKQDXXXAA------EAAMDVEEADSSNAAA------QPKGGEEKTAAKQLHVLGIGGRRAKRGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            MIRLKKKQ+             AMDVE+  ++   A      + KGGE K++   + +LGIGG++++ G +K    K+TPGE+RIQKDIA+LDGG+VA ITFPNPNNLTSF+VRV PD+G W+GA+Y FTF IPA+YPH+PPKV C TKIYHPNINLQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLN EAAELYR++  QFER V+R+L G  +  E F+RLI
Sbjct:    1 MIRLKKKQEEAERXXXXXXXSEAMDVEQESTNGGDAKADDQDESKGGESKSSG-GVKLLGIGGKKSRTGGAKKT-KKRTPGELRIQKDIAELDGGNVAVITFPNPNNLTSFEVRVTPDTGMWRGATYHFTFAIPAMYPHEPPKVHCHTKIYHPNINLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNREAAELYRNDARQFERVVRRSLQGYSVGAEQFERLI 231
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: A0A7S3M2N2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2N2_9STRA)

HSP 1 Score: 286 bits (733), Expect = 4.820e-92
Identity = 145/224 (64.73%), Postives = 172/224 (76.79%), Query Frame = 3 
Query:   48 MIRLKKKQDXXXAAEAAMDVEEADSS---NAAAQPKGGEEKTAAKQLHVLGIGGRRAKRGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            MIR++KK     + + A D    + +   N A +PK   E+  A  L +LGIGG++ K G+ KA G K+TPGEIRIQKDIA+LDGGSVA++ FPNPN+LT+F V V PDSGFW GA Y FT  IPALYPH+PPKV C TKIYHPNINL+GNVCLNILRE+WKPVLDINAVIYG+IYLFYEPNP+DPLN EAA+LYR + +QFER VKRTL G    GE F+RLI
Sbjct:    1 MIRMQKKPAPVVSEKVAEDESAVNGNSPVNVAGEPK---EEEGAGGLSLLGIGGKQIKSGAKKA-GKKRTPGEIRIQKDIAELDGGSVAQVDFPNPNDLTNFTVTVSPDSGFWSGAKYVFTVAIPALYPHEPPKVTCRTKIYHPNINLEGNVCLNILREEWKPVLDINAVIYGMIYLFYEPNPDDPLNREAADLYRTDKNQFERVVKRTLQGYSHAGEAFERLI 220
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: A0A7R9W2H1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2H1_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.240e-89
Identity = 133/197 (67.51%), Postives = 159/197 (80.71%), Query Frame = 3 
Query:  123 SNAAAQPKGGEEKTAAKQLHVLGIGGRRAK-RGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            S+A + P   E  +  K++ +LGIGG++ K +G + +   K+TPGEIRIQKDIA+LDGG VA I FPNPN+LT+F VRV PD+GFWKGASY FTF IP  YPH PPKV CETKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R +++QF+R V RTL G ++    FQRL+
Sbjct:   65 SSAISTPPSSEPSSETKKVSILGIGGKKKKDKGENSSSSKKRTPGEIRIQKDIAELDGGKVATIDFPNPNDLTTFHVRVTPDTGFWKGASYLFTFQIPDHYPHSPPKVHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRRDVNQFQRLVSRTLSGGILDNVQFQRLV 261
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: A0A6T7JLN4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JLN4_9STRA)

HSP 1 Score: 276 bits (707), Expect = 4.280e-88
Identity = 126/181 (69.61%), Postives = 153/181 (84.53%), Query Frame = 3 
Query:  171 KQLHVLGIGGRR-AKRGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            K++ +LGIGG++ A +G + + G K+TPGEIRIQKDIA+LDGG VA I FPNPN+LT F V + PD+GFWKGA YDFTF IPA YPH+PPKV C T+IYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R +++QF R V+RTL G ++ G  F+RL+
Sbjct:   42 KKVSLLGIGGKKNASKGENGSGGKKRTPGEIRIQKDIAELDGGKVAIIDFPNPNDLTMFHVAITPDTGFWKGAKYDFTFQIPAHYPHNPPKVTCGTQIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDVNQFNRLVQRTLRGGILDGVPFERLV 222
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: A0A448YW25_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW25_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.700e-86
Identity = 125/180 (69.44%), Postives = 148/180 (82.22%), Query Frame = 3 
Query:  174 QLHVLGIGG-RRAKRGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            Q+ + GIGG ++ K+G S A  TKKTPGEIRIQKDI +LDGG VAE+TFP PN+LTSF V + PD+G+WKGA Y+F F +PA YPH PPKV C+T IYHPNI+LQG VCLNILREDW+PVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R +I  FER V RTL G  + G TF+RL+
Sbjct:   41 QVSLFGIGGQKKTKKGESSA--TKKTPGEIRIQKDIGELDGGKVAEVTFPKPNDLTSFNVSITPDTGYWKGARYEFEFKVPAHYPHSPPKVECKTSIYHPNIDLQGKVCLNILREDWRPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDIQSFERLVNRTLRGGTLDGVTFERLV 218
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: A0A7S3KW38_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KW38_9STRA)

HSP 1 Score: 272 bits (695), Expect = 2.100e-86
Identity = 124/180 (68.89%), Postives = 150/180 (83.33%), Query Frame = 3 
Query:  174 QLHVLGIGGRRAKRGSSKAMGTKK-TPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            ++ +LG+GG++ K  +    G KK TPGEIRIQKDIA+LDGG VA I FPNPN+LT+F VRV PDSG+W+GA+Y F+F +P+ YPH+PPKV C TKIYHPNI+LQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R ++ QFER V RTL G V+ G  F++L+
Sbjct:   35 KVSLLGVGGKKKKNENGSGTGGKKRTPGEIRIQKDIAELDGGKVATIEFPNPNDLTAFDVRVCPDSGYWQGATYHFSFNVPSHYPHEPPKVECHTKIYHPNIDLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVNRTLRGGVLDGVQFEKLV 214
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: K0T069_THAOC (UBC core domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T069_THAOC)

HSP 1 Score: 271 bits (694), Expect = 3.390e-86
Identity = 128/181 (70.72%), Postives = 149/181 (82.32%), Query Frame = 3 
Query:  174 QLHVLGIGGRRAKR--GSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            ++ +LGIGG++ K   G+  +   K+TPGEIRIQKDIADLDGG VA I FPNPNNLT+F+V + PDSG+WK A+Y+F F IP  YPH PPKV CETKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLI+LFYEPNP+DPLNHEAA+L+R +I QFER V+RTL G VM G  F RLI
Sbjct:   38 KVSLLGIGGKKKKANDGNGASGKKKRTPGEIRIQKDIADLDGGKVANIEFPNPNNLTAFEVSITPDSGYWKNATYNFKFDIPDHYPHTPPKVHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIFLFYEPNPDDPLNHEAADLFRRDIRQFERLVQRTLRGGVMDGVHFDRLI 218
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BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Match: B7G8G3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8G3_PHATC)

HSP 1 Score: 271 bits (694), Expect = 3.630e-86
Identity = 135/222 (60.81%), Postives = 166/222 (74.77%), Query Frame = 3 
Query:   48 MIRLKKKQDXXXAAEAAMDVEEADSSNAAAQPKGGEEKTAAKQLHVLGIGGRR-AKRGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLMGCVMQGETFQRLI 710
            M+ LKKK++   AA  A   ++AD+         G       ++ +LG+GG++  K G  KA   K++PGEIRIQKDIA+LDGG+VA I FPN N+LTSF V + PDSG+WKGA+Y FTFTIP  YPH PPKV C+TKIYHPNI+LQG VCLNILREDWKPVLDIN V+YGLIYLFYEPNP+DPLNHEAAEL+R ++ QFER V RTL G ++ G  F+RL+
Sbjct:    1 MLALKKKREEAKAAAEAA-AKDADADTPIVDSGVGTHSPDNNKVSLLGVGGKKQTKNGECKAT-KKRSPGEIRIQKDIAELDGGNVATIDFPNANDLTSFHVAISPDSGYWKGATYHFTFTIPPHYPHSPPKVECQTKIYHPNIDLQGKVCLNILREDWKPVLDINGVVYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVSRTLRGGILDGVQFERLV 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig581.13409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA52_9PHAE3.800e-13589.69UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YZU8_9STRA9.180e-9778.65Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A6V1TYK4_HETAK2.180e-9363.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3M2N2_9STRA4.820e-9264.73Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9W2H1_9STRA1.240e-8967.51Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6T7JLN4_9STRA4.280e-8869.61Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448YW25_9STRA1.700e-8669.44UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
A0A7S3KW38_9STRA2.100e-8668.89Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
K0T069_THAOC3.390e-8670.72UBC core domain-containing protein n=2 Tax=Thalass... [more]
B7G8G3_PHATC3.630e-8660.81Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig581contigH-paniculata_contig581:28595..34282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue6.1e-104
Seed eggNOG ortholog2880.D8LRS2
Preferred nameUBE2M
KEGG rclassRC00005,RC00726,RC00836,RC00837,RC01726
KEGG koko:K00053,ko:K00573,ko:K00698,ko:K10579
KEGG ReactionR02335,R03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00520,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko04120,map00290,map00520,map00770,map01100,map01110,map01130,map01210,map01230,map04120
KEGG ModuleM00019,M00570
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009719,GO:0009725,GO:0009733,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0061650,GO:0061654,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
EggNOG free text desc.NEDD8 transferase activity
EggNOG OGsKOG0420@1,KOG0420@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_002220.1
EC1.1.1.86,2.1.1.77,2.4.1.16
COG Functional cat.O
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
Exons6
Model size1346
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig581.13409.1prot_H-paniculata_contig581.13409.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig581 28642..33649 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.7544768-UTR-H-paniculata_contig581:28594..286411622930631.7544768-UTR-H-paniculata_contig581:28594..28641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig581 28595..28641 +
1691481381.1631944-UTR-H-paniculata_contig581:28594..286411691481381.1631944-UTR-H-paniculata_contig581:28594..28641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig581 28595..28641 +
1622930631.8636887-UTR-H-paniculata_contig581:33649..342821622930631.8636887-UTR-H-paniculata_contig581:33649..34282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig581 33650..34282 +
1691481381.2263463-UTR-H-paniculata_contig581:33649..342821691481381.2263463-UTR-H-paniculata_contig581:33649..34282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig581 33650..34282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.767949-CDS-H-paniculata_contig581:28641..286681622930631.767949-CDS-H-paniculata_contig581:28641..28668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 28642..28668 +
1691481381.1755304-CDS-H-paniculata_contig581:28641..286681691481381.1755304-CDS-H-paniculata_contig581:28641..28668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 28642..28668 +
1622930631.7841141-CDS-H-paniculata_contig581:29589..297881622930631.7841141-CDS-H-paniculata_contig581:29589..29788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 29590..29788 +
1691481381.1829858-CDS-H-paniculata_contig581:29589..297881691481381.1829858-CDS-H-paniculata_contig581:29589..29788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 29590..29788 +
1622930631.8053548-CDS-H-paniculata_contig581:32693..327731622930631.8053548-CDS-H-paniculata_contig581:32693..32773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 32694..32773 +
1691481381.1907742-CDS-H-paniculata_contig581:32693..327731691481381.1907742-CDS-H-paniculata_contig581:32693..32773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 32694..32773 +
1622930631.8191543-CDS-H-paniculata_contig581:32924..330111622930631.8191543-CDS-H-paniculata_contig581:32924..33011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 32925..33011 +
1691481381.198746-CDS-H-paniculata_contig581:32924..330111691481381.198746-CDS-H-paniculata_contig581:32924..33011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 32925..33011 +
1622930631.8343906-CDS-H-paniculata_contig581:33234..333211622930631.8343906-CDS-H-paniculata_contig581:33234..33321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 33235..33321 +
1691481381.207205-CDS-H-paniculata_contig581:33234..333211691481381.207205-CDS-H-paniculata_contig581:33234..33321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 33235..33321 +
1622930631.8518615-CDS-H-paniculata_contig581:33463..336491622930631.8518615-CDS-H-paniculata_contig581:33463..33649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 33464..33649 +
1691481381.2181466-CDS-H-paniculata_contig581:33463..336491691481381.2181466-CDS-H-paniculata_contig581:33463..33649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 33464..33649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig581.13409.1

>prot_H-paniculata_contig581.13409.1 ID=prot_H-paniculata_contig581.13409.1|Name=mRNA_H-paniculata_contig581.13409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
MIRLKKKQDDEKAAEAAMDVEEADSSNAAAQPKGGEEKTAAKQLHVLGIG
GRRAKRGSSKAMGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFK
VRVKPDSGFWKGASYDFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVC
LNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFE
RTVKRTLMGCVMQGETFQRLI*
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mRNA from alignment at H-paniculata_contig581:28595..34282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig581.13409.1 ID=mRNA_H-paniculata_contig581.13409.1|Name=mRNA_H-paniculata_contig581.13409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5688bp|location=Sequence derived from alignment at H-paniculata_contig581:28595..34282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGCCGTTGCTGCTGTACAAGAGTTCAGGAACCAGCGGCGAAACCATG
ATTCGCCTGAAGAAGAAGCAAGATGTGAGTTGTGGTTGCTGTGCCTGTCA
TCTGTTTCATTATTTTTGATTGATGATGATGGGCGCTCAGTTGGCTAGAT
GGCAGATTGAGAGCTCACAAAGCAGCAGATGCTGCAAGCCGTCTATAGAG
TAGTATAAGCTTTTTGTGCCTGGTGTGATTGGCGTGATCATGTCAAACAC
GCGTCATTTTTTGTGTGTGTGAGGCAACAAGCGGCTTCATCCTCTTTTGA
TTGCGTTCCCTCGGGAAAATATAACAAATGCATTGATATAGCTTGTATAT
TCAAATCTCATTCTGCAAGTGCGTTCATTTTCTCGGCATTGGTATGGGTC
GAATTTGCAATCTAGCTTGTTGCTGCAGCTTGCATAAGACGGGTAGAACC
AGAGACCATTCAAATCTATGAACCCGAGTACATGAACACCAGCCGCTGAA
TTGACTTGTGATCGTGGTAAGTCATACTCTCGGTGTTTTCTTCCGATGTT
TCAATGACCCCTGAATATTTCATGGATTAGTAATACTTGGATTTCAAACT
ACAGTACTGTAGGCTTGCAGTCATGAACCTCTCACCTTGATTTCCAGCCA
GGGCTGTCCTTAGCTTTTGCTGCGATTCCATTCCGAAATTGCTCAATTGG
AGGCATGATGGGGTAGCAGGACACCAGTGCCGAATCTACTTCCTTTCAAC
GAAGGTGTACAAAAGACCCCGCATTCCCTTTCTGTATTGGCAGTTACATT
TTTTTTTTAGTCTAGTGCGTGCGCTTACGGGCAGGGTCAAGTTGGGCTGG
TGCCGGACCATATGTTCCGAGTCTAAGAACTCCATATGGCTCGGATTCTT
TGCGGACTATTACCACCTAATTTAGTAGGATAAGCGTGTGTACGAGATAA
AAATTGAATTATTCCGCCTGCAACTTTGGTGAACATTGTCAACAGGATGA
AAAGGCTGCCGAGGCAGCTATGGATGTAGAGGAGGCCGACTCCTCAAATG
CGGCGGCTCAGCCAAAAGGGGGCGAGGAGAAGACGGCAGCCAAGCAGCTT
CATGTTTTGGGAATCGGAGGGCGAAGGGCGAAACGAGGTTCTTCCAAGGC
AATGGGCACAAAAAAGACCCCAGGGGAGATTCGCATCCAGAAGGGTGAGG
CACTCTCAGACGGAAAACGCCGAACGGCCCATACGTACTGTAGTCCTTAC
TGAGTGCAATTCAGCTTCGTAATTCATTTCTTCCTTCAACCATCTCTTAG
CTCATGTTGAAAGCTTGTCGCGTCAATGCTAATTATTCCGAATATGCCCA
GCCGACCAATAGTGTTCGAATACGGCGGTTGAGGAACACAAACTCAGCAT
AACAGTGCGTCCAGAAATTTCCCAGAACGTTCTGGTCTGGGTGGTTCTGA
GTTTGACCCTATAACAGTTTATGCTCAAATTGGTGCCGCCAGACGCCAAC
TTGAGCTTTACCAACGCACACTTTACCTAGGGGCAGGGGTTAGGCTTAGC
GTTACCTTTAGTTCCAGCATTGGTTCTGCTCGCTTCGAGGTACCATAAAG
GGTGGATCATAAAGCAAAAGAACTGTCAACCATTGTGTTCGACCAAGTGG
TTAACAGTGCTTCAACAGACAATCCCACGGCTTAGTTTAAAGAGAAGAGG
AAATGACACATATAGTACTGAAAAATCCCACGATTTTAGGATTCCACTGG
GACGCTACATGGATTGGTGTTTTTAGTGCTAAGACTTGACTGTGAGTCAG
ACAAGCAGTCAGAGGGGGTTGGGCTGCACTTCCCTTGAAAATTCCAGCAG
CTTCATTAGGTGCCTGGGCTGCTTTGCCTGGCGTGTCAGTAGCGTTACCA
AGTGGTAAAGAAATATTAGTTGATTATACAAACTGTTACATCCACCGTCT
GGGACCCTAGAGCTTTGATGTCTGACCTATGACCTTCTAATCAGCTCTTA
AATTTTTTTTTCTTGTCATTATGACAGAAGTCTGGTGGTTGACCGTTCTC
GCTTTACACCAAATCCAATATAGCAAAGCCCCCAATTAGCGAAGAAAAGA
CCTCTCTGTGCACCTGAGATGCATTCACCTGCTGTCTGGAGCAGGATAAA
CGCTAATGCGCGACTACCCGTAGGATCCCCATTCGAACATGTGCATAGGA
AAGCTTACTTGGGGCGGAAACGACAATGCCTGTATACAGATACTGGGAAA
CCAGAAAAGAGACCGCGCTGCTAGGTATATAGTGTCATACGTATTTCGTT
GGAGGACACGCAGAGTGCGGTAAGTTAATATCTGCTACAGACGATAGTAC
ATCGTACCTAGAGACGAAGCGGTGTATTATCCTCAGCCATCATCTGACAC
TGTATCTTATTTTTTCTGCCTGCACAGCAGGATAAATATACGACCTATCT
CCGTGCTGACAAACATACAATTCCACCATATCTGGTTCATCATGGCAGCT
CTTGTCGAAGTTGGACGTTGCAGCCCTCTCATTGGCCAGTGAGGAGGAAC
AAAGAGTAGGGCTAGGGTAAAGTGTTTCACGAGCGCCGATCCGCAAATCG
TCTTAAAAAAAGCTGTATCAAATCATCTTCAATGGCATGGTTCATGTATC
CCCAAGGGTGAATGCATGATTGAAAATGGTCATAATGTTTGATGGTGAAA
ATATATAATGCCTAGCTGCATTGCAAATCGGCTTAAAACCCCAGACACGT
CGACCCAAATTACCCCTCCTCCGGCAGCCAGACTGGAAATCAGATGAAAG
AAAATGGGTTACCACGACTCGGAGATTATGGGGGACCTACGCAACGTGTT
GTTTATTCCATTTTTGGTTTCCTTTTTCATCGAGCCAGCGAAGATCTCTA
CATATTTTCAAGCCACTCTCGCGAAAAGCCGTTCACTTTTGGTTGCACAC
GTTCCGAACAACCAGTCAGTCGCCCAGCATGGATTATGCATTCTGTTGAC
GAATTCGTTATTATTCGTGACTGGCGTGGTATATCCATTATTTGACCGTC
ACGAGGTAAACTTCCTGGGAGAATTGACACATGCAAGAGTCGTGGCGTCA
CCGTCTTGCGCAATCCTGAAGGGTGCTGGGCACGCATGATTGATCAAATT
GGTACATTTGGCACTGATTTGAGCGTTGCCAACGCGCGCTATGCCTATGT
GGTGTATCTTAAGGTTAAAGTTAGCGTGAGAATACAGCGTTTGTTTTACT
CGCGTGAGGGCACAACACGCAGTGAATCGTTAAACAACGAGCTGTCGGCC
ATTCTTTCCAACCTCGCGGTAAAAAGACCTCAAGCATGCGATGAACGAAG
GGAAGGAAGGGACCGTGTGACTTTCTGGCGTCGTGTAGTTAGTGGACGCT
CCAGTCATGCACGATGGCAGAGGGTGGTATAGTCGGTGGCCTACTTCAAT
GCACCCTAGTGCGGACAAAAATAGGGTGTCTTTTTAAGGGCGTGTGTCTC
TGTGCCTTGAAGGGGGGCACCGACTGTACACCTATCTCTATTGTCTATTC
TGTTGTGTTGCGTCTGTATAGCAGACGTGTACTTTCACGAAGCTGTCCTC
CTTGAAATACAATACCATTTGATCGCCAGACATGGCGGCTCGCCTGATGC
ACAAAGTAGTGGCCAGACTGCTAGTTTTACTGCTACTTAGCGCTGATGAC
GTCACGGCGCTCTCGTATTGCTCAAGTGCAACCGGAGCAGCATGATCGTA
TCTCTCTCTCTCTCTCTCTCTTGAATATATATATACACACACATACGTGG
CAACGGGGTTGTTCAGCAACTGATTTTCCAGTGTCTCTGAGCCGGATGTT
TCTTAGTAATTCTCACCTATAATTTCGAACTGGGATCCTGATGGGATTCT
GGGACAGCGGCGCGGAGAGGGTTGACAGTATTTGAGTTTGGAAGCGAGTT
TTGTCTCTTTCGTGAGATGCTGCGTTTTCTAATTCCATTGTGTTAACTTG
TGAACCATGAGAGGTGTCGAGATGCTTTTATTTCACGTATCATCCCAAGA
CGTCGAATGTCCTCATTGTGTTTGAATGTCTCCCATGCCACTTGGACAGA
TATCGCGGACTTGGACGGGGGAAGCGTTGCGGAGATCACCTTCCCTAATC
CCAACAATCTGACGTCGTTCAAAGTCAGGGTGAGAAACAGCCGGTCAGGG
AGAGACAAAGTATATTTACTTACCGGCGTTGTAATTTTTCGACGGACTAG
AAAGTCGTCAAAGCATTTGCATTTTTGCCTGCTACTAAGATGATCGATAA
CTCCTCATGTTGAATATTTTTGGACTGCAGGTTAAGCCGGACAGTGGATT
CTGGAAGGGCGCTTCTTACGATTTCACCTTCACTATTCCTGCGCTCTACC
CCCACGACCCACCCAAGGTGAGAGCGAAGTTCTCATTTTGGAAGGTGGTG
ATGACAGTGTTCCTCAGGCTGACCGAAGAAATATATTGGAAATTAACTGT
GCAGAACTCGCTAAAATCTATTCAAGACGCGACTGTGTTGAATCACGTTC
CAACTGTGGATTGTGCAATGGTCTTGCATGCGTTAGCACACGTCTTTGCC
TTATACCGTCGATGACCGTACTGAATTCACCGTTTGTCAGGTGCTGTGCG
AAACCAAAATCTACCATCCAAACATCAACTTACAGGGCAACGTCTGCCTC
AACATCTTGCGGGAAGATTGGAAGCCGGTGAGTGGGCCACTGTTGCTGCG
TTTCTCGAAGCTTGTACTCAGTCCATAGCAAGTAGTCATTTTGGTCAGAG
GTGTGGAACTGAGTCTGACTCCAACTATGTCCCTCCTCCTGTATTTGCCA
ATGGCGTGTTTTTTTGCAGGTTTTGGATATCAACGCTGTCATCTACGGGC
TGATTTACCTTTTCTACGAACCAAACCCAGAGGACCCGCTCAATCACGAG
GCGGCAGAGCTGTACCGTGACAACATCAGCCAGTTTGAGCGAACAGTGAA
GAGAACGCTAATGGGTTGCGTCATGCAGGGCGAGACTTTCCAACGTCTGA
TTTGAGGCTACTGTTGATTTCTACTGCCTAACAACATTGTGGGATGGGGA
ACCACGAGTTGGAAACAGCGGGAGTTACCAGCGCGAAGGACTGATTGCAG
ACAGTTTGGGGAGCGTATGCAGTAGCACAGGGATGGGGTGTGGTTTGGAT
GGTGTGGTACATGTTTGTAGACCGCCGCCCACATGCTTTTTATATTTGAT
ATGGCCCGATGCCGGCAGCAACCGGCCCTCGCTGCTCGATATGTGTCAGT
GGTGACACGTTACCTATTCCTGGCAGTAGCTTGCGAAGATTAAAGCGTGA
ATGGTTAGATTGTTACTGTACTTCGATGTCTTGGAAGTAGGTGTTTTGGT
TGCTTGGATTAGCGGCATATTGCACCACTTATTCCCTGTTCGTATCACTA
AAAAGGTATTACATCACAACTACTGACGCAAATGCTTTTGACACTTGCAG
ACCACGTGTCCGATGGGATCAGAAGATACAGTATGGGCCCCTAGTAGAAA
AAATATGTACTCATCGGAGGCTCCGAACTTTGAAAGTTCCGGAATGGTTC
GTTTCCCTAATGAAATTGTAATAAATCGACGCTTACCCTAATAAAAGAAT
GGTGAGATAAGAAAGTCTAAATTGGAGTCAAATAGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig581:28595..34282+

>mRNA_H-paniculata_contig581.13409.1 ID=mRNA_H-paniculata_contig581.13409.1|Name=mRNA_H-paniculata_contig581.13409.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig581:28595..34282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTCGCCTGAAGAAGAAGCAAGATATGATTCGCCTGAAGAAGAAGCA
AGATGATGAAAAGGCTGCCGAGGCAGCTATGGATGTAGAGGAGGCCGACT
CCTCAAATGCGGCGGCTCAGCCAAAAGGGGGCGAGGAGAAGACGGCAGCC
AAGCAGCTTCATGTTTTGGGAATCGGAGGGCGAAGGGCGAAACGAGGTTC
TTCCAAGGCAATGGGCACAAAAAAGACCCCAGGGGAGATTCGCATCCAGA
AGGGATGAAAAGGCTGCCGAGGCAGCTATGGATGTAGAGGAGGCCGACTC
CTCAAATGCGGCGGCTCAGCCAAAAGGGGGCGAGGAGAAGACGGCAGCCA
AGCAGCTTCATGTTTTGGGAATCGGAGGGCGAAGGGCGAAACGAGGTTCT
TCCAAGGCAATGGGCACAAAAAAGACCCCAGGGGAGATTCGCATCCAGAA
GGATATCGCGGACTTGGACGGGGGAAGCGTTGCGGAGATCACCTTCCCTA
ATCCCAACAATCTGACGTCGTTCAAAGTCAGGATATCGCGGACTTGGACG
GGGGAAGCGTTGCGGAGATCACCTTCCCTAATCCCAACAATCTGACGTCG
TTCAAAGTCAGGGTTAAGCCGGACAGTGGATTCTGGAAGGGCGCTTCTTA
CGATTTCACCTTCACTATTCCTGCGCTCTACCCCCACGACCCACCCAAGG
TTAAGCCGGACAGTGGATTCTGGAAGGGCGCTTCTTACGATTTCACCTTC
ACTATTCCTGCGCTCTACCCCCACGACCCACCCAAGGTGCTGTGCGAAAC
CAAAATCTACCATCCAAACATCAACTTACAGGGCAACGTCTGCCTCAACA
TCTTGCGGGAAGATTGGAAGCCGGTGCTGTGCGAAACCAAAATCTACCAT
CCAAACATCAACTTACAGGGCAACGTCTGCCTCAACATCTTGCGGGAAGA
TTGGAAGCCGGTTTTGGATATCAACGCTGTCATCTACGGGCTGATTTACC
TTTTCTACGAACCAAACCCAGAGGACCCGCTCAATCACGAGGCGGCAGAG
CTGTACCGTGACAACATCAGCCAGTTTGAGCGAACAGTGAAGAGAACGCT
AATGGGTTGCGTCATGCAGGGCGAGACTTTCCAACGTCTGATTTGAGTTT
TGGATATCAACGCTGTCATCTACGGGCTGATTTACCTTTTCTACGAACCA
AACCCAGAGGACCCGCTCAATCACGAGGCGGCAGAGCTGTACCGTGACAA
CATCAGCCAGTTTGAGCGAACAGTGAAGAGAACGCTAATGGGTTGCGTCA
TGCAGGGCGAGACTTTCCAACGTCTGATTTGA
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