mRNA_H-paniculata_contig581.13407.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig581.13407.1
Unique NamemRNA_H-paniculata_contig581.13407.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: A0A6H5KGF5_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE)

HSP 1 Score: 458 bits (1179), Expect = 4.750e-157
Identity = 231/328 (70.43%), Postives = 261/328 (79.57%), Query Frame = 2
Query:  191 GFGPRS-----PRVGVRTKEPLPE--EQVPVAAGELPDDAFSQYPPLSTQQLATLKRAEDIDLGHGETIPAEVVNRIKEKHGFKLFDEKLFPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEKLPKGRKGSLKSMEIRSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADYTRRWRE 1153
            GFG +S      ++    K P P   +Q PV AGELP+DAFSQ+PPL+ +Q  TL++A     G     P EV +RI+E+HGF+ FDEKLFPGIRLLHADPVVFEV+ FFTP+ECDAYI+MST K    RKG L   E++SATTSS  Q QQ  TSTTWFHHY  APELVAKAS LLGV+D S WEEPQTVRYRPGE+F+WHLDALPPSE GASKGGQRTATVLVYLTN+  N GGATAFRDLGPLRVRPKKGKCLVFFPSFGGE GSPFD+R LHAGEVVG+G KA+EKYIAQLWCHKK YP +VPEG+SHEAAE+ I DY RR+ E
Sbjct:   31 GFGKQSRSNTPAKLKTPAKAPYPAVPKQTPVRAGELPEDAFSQFPPLTPEQKQTLQKAP---AGKATAFPVEVADRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSS--QCQQXXTSTTWFHHYASAPELVAKASLLLGVDDYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQGNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYARRFAE 353          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 5.940e-80
Identity = 140/252 (55.56%), Postives = 168/252 (66.67%), Query Frame = 2
Query:  437 LFPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEK-------------LPKGRKGSLKSMEIRSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVE-DISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADYTRRWR 1150
            LFPG+RLLHA+P V  V +FFT EECD YIS S                      GS   M+ RSAT  ++     QRTSTTWFH +   PEL+AKASAL+GV  +   WEE QTVRYRPGEKF+WHLDALPP+   AS+GGQR AT+LVYLT +    GGATAFRDLGPLRVRP+KG  L+FFPS GG P  PFD RTLHAGEVV  G + ++K+IAQLW  +  Y   VP+ N HE A  V+A++ + W+
Sbjct:  100 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQ-RSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAE-QDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEFDKIWQ 349          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 6.330e-80
Identity = 158/376 (42.02%), Postives = 197/376 (52.39%), Query Frame = 2
Query:  269 GELPDDAFSQYPPLSTQQLATLKRAEDIDL----------GHGETIPAEVVNRIKEKHGFKLF-------------------------------------------------------DEKLFPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEKLPKGRKGSLKSMEI----------------RSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVE-DISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADYTRRWR 1150
            G+LPDD F+ +PPLS   L ++   +  DL          G  E +P +V+  I+ +HG + F                                                          LFPG+RLLHA+P V  V +FFT EECD YIS S                                 RSAT  ++     QRTSTTWFH +   PEL+AKASAL+GV  +   WEE QTVRYRPGEKF+WHLDALPP+   ASKGGQR AT+LVYLT +    GGATAFRDLGPLRVRP+KG  L+FFPS GG P  PFD RTLHAGEVV  G + ++K+IAQLW  ++ Y   VP+ N HE A   +A++ + W+
Sbjct:  201 GQLPDDDFATFPPLSPDTLKSIMGVDVFDLPAGGIPASERGQQEALPPQVLECIRGRHGLEEFAGGRRLLDPEYFGADGEAGDAALTGSXXXXXXXXXXXXXXXXXXXXXGGDGTAAKSRLLFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVVRPGAE-QDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEFDKIWQ 575          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA)

HSP 1 Score: 251 bits (640), Expect = 8.050e-75
Identity = 131/237 (55.27%), Postives = 161/237 (67.93%), Query Frame = 2
Query:  440 FPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEKLPKGRKGSLKSMEIRSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDLGP-----LRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADY 1135
            F   R+LH DP+V  VD+FFT EECD YI+MS    P        ++  RS T   ++  + QRTSTTWFHHY   PEL+AK+S L G++DI ++EEPQTVRY+P +KF+WHLDAL P     SKGGQRTAT+LVYLT+L    GGAT FRDLGP     L+V+PKKG  L+FFP+ GG P +PFD RTLHAGEVV    K+ +K+IAQLW  + SY   VP  N H AA E I+ Y
Sbjct:  202 FDKFRVLHIDPLVIAVDDFFTHEECDKYIAMSD---PTAGNKDGDAVMTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLDDIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVVSADCKS-DKWIAQLWLREDSYEPTVPPENVHAAATEPISQY 434          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 3.430e-71
Identity = 125/238 (52.52%), Postives = 156/238 (65.55%), Query Frame = 2
Query:  440 FPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEKLPK-GRKGSLKSMEI-RSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIAD 1132
            F   R+LH DP++  +D+F TP ECD YIS+++   PK  +  +   MEI +S T   +   + QRTSTTWFHHY     L+AKAS LLG++ I  WEEPQTVRYR  EKF+WHLDAL PSE     GGQR AT+LVYL +L    GG+T FRDLG     PL+V+PKKG  L+FFP+ GG P  PFD RTLHAGE V   +   +K+IAQLW  +  Y    P GNSHEAA E +++
Sbjct:   57 FTKFRILHTDPMLLSIDDFLTPTECDTYISLTSN--PKYDKNANTAPMEIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIERWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSD-ESDDDKWIAQLWLREHVYTPTAPPGNSHEAAVEAVSE 291          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA)

HSP 1 Score: 242 bits (618), Expect = 4.300e-71
Identity = 132/245 (53.88%), Postives = 163/245 (66.53%), Query Frame = 2
Query:  434 KLFPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEKLPKG----RKGS-LKSMEI-RSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADY 1135
            K F   R+LH DP+V  VD+FFTPEECDA I+ ST  +       ++G+ L  M+I +S T   +S+ + QRTSTTWFHHY   PEL+AKA  L+G+ DIS +EEPQTVRYR  E F+WHLDAL P+   A KGGQR AT+LVYLT+L    GGAT FRDLG     PL+VRPKKG  L+FFP+ GG P  P D RTLH GE V    + ++K+IAQLW  +  Y    P GNSH +A   I+DY
Sbjct:  233 KPFSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGINDISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVASDAE-QDKWIAQLWLRETPYTPTAPPGNSHASASSPISDY 476          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: A0A448ZM68_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZM68_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.600e-70
Identity = 123/245 (50.20%), Postives = 160/245 (65.31%), Query Frame = 2
Query:  440 FPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEKLP-KGRKGSLKSMEIRSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDLGP------------LRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADY 1135
            F  I +LH DP+V  +D+FFT EECD Y+ MS   +  +G + ++ S + RS T   +   + QRTSTTWFHHY   PEL++KAS L+G++ I  WEEPQTVRY+  EKF+WHLDAL P ++ A KGGQR AT+LVYL +L+  +GGAT FRDL P            L+V+PKKG  L+FFP+ GG PG+PFD RTLH GEVV  G    +K+I+QLW     Y    P GN HE A + + +Y
Sbjct:  221 FEKINVLHLDPLVLSIDDFFTEEECDRYVEMSLAPVTDEGSQKTMDSFKTRSKTVGKDKNAKSQRTSTTWFHHYKNVPELMSKASRLVGLDTIDRWEEPQTVRYKRNEKFTWHLDALAPDQSTAEKGGQRLATLLVYLKDLE--SGGATIFRDLTPATGETDDNASGFLKVQPKKGSALMFFPAAGGIPGAPFDIRTLHCGEVV-PGASETDKWISQLWLRATXYTPTAPPGNLHEEALDRVKEY 462          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA)

HSP 1 Score: 233 bits (594), Expect = 3.230e-70
Identity = 121/238 (50.84%), Postives = 156/238 (65.55%), Query Frame = 2
Query:  440 FPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEKLPKGRKGSLKSMEI-RSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADY 1135
            F   R+LH DP+V  VD+F T +ECD  +++ T+     +  +   M+I +S T   +   + QRTSTTWFHHY   P+L+AKAS LLG+++I  WEEPQTVRYR  EKF+WHLDAL PS+  A  GGQR AT++VYL +L   +GG+T FRDLG     PL+V PKKG  LVFFP+ GG P  PFD RTLHAGE V   +   +K+IAQLW  +  Y    P GN+H AA + I+ Y
Sbjct:   26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVAL-TDNPKYDKNANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSD-ESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 261          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC)

HSP 1 Score: 238 bits (608), Expect = 1.100e-69
Identity = 126/241 (52.28%), Postives = 158/241 (65.56%), Query Frame = 2
Query:  440 FPGIRLLHADPVVFEVDNFFTPEECDAYISMS--TEKLPKGRKGSLKSMEI-RSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETG-ASKGGQRTATVLVYLTNLQGNAGGATAFRDLG---PLRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADYTR 1141
            F   R+LH DP+V  VD+FFT EECD Y+ MS   E       G+L+ + + +S T   +S+ + QRTSTTWFHHY   PEL+A+A+ LLG+  IS +EEPQTVRYR  EKF+WHLDAL P     +S  GQR +T+LVYLT+L+   GGAT FRDLG   PL+VRPKKG  L+FFPS GG P  PFD RTLH GE VG+     EK+IAQLW  ++ Y    P G+ H  A   I +Y +
Sbjct:  229 FEQFRVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLPGISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGED-APNEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEYCK 468          
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Match: B5Y5K1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5K1_PHATC)

HSP 1 Score: 235 bits (600), Expect = 5.570e-69
Identity = 132/313 (42.17%), Postives = 186/313 (59.42%), Query Frame = 2
Query:  209 PRVGVRTKEPLPEEQVPVAAGELPDDAFSQYPPLSTQQLATLKRAEDIDLGHGETIPAEVVNRIKEKHGFKLFDEKLFPGIRLLHADPVVFEVDNFFTPEECDAYISMSTEKLPKGRKGSLKSMEIRSATTSSESQFQQQRTSTTWFHHYVCAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETGASKGGQRTATVLVYLTNLQGNAGGATAFRDL----GPLRVRPKKGKCLVFFPSFGGEPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEAAEEVIADY 1135
            PR    T EP+  +++ VA  + P  + +++  L +   AT +           T PA             L     F   R+LH DP+V  +D+FFT  ECD Y++++T+     +K ++  +E RS T   ++  + QRTSTT+++H+   PEL+AKAS LLG++ I  WEEPQTVRYR  EKF+WHLDAL P+E     GGQR AT+LVY T+LQ + GGAT FRDL    G L VRP++G  L+FFP+ GG P +PFD RTLH G+ V    + ++K+I+QLW  + SY    P GNSH  A + I++Y
Sbjct:  129 PRFNYETSEPVSLDELMVAPKDPPSISRNEFDDLLS--AATGRPVS--------TPPASTFASTPSSADLPLDALPPFEKFRILHVDPLVLGIDDFFTAAECDRYVALATQN----QKHNI--LESRSPTVGKDAAAKAQRTSTTYYNHFEGVPELMAKASRLLGLQSIDRWEEPQTVRYRKNEKFTWHLDALGPNENNPGLGGQRLATLLVYHTDLQSDEGGATMFRDLTGTNGRLAVRPRRGAALLFFPAAGGIPNAPFDVRTLHCGQAVSATSQ-QDKWISQLWLRQSSYTPTAPPGNSHSQATKAISEY 424          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig581.13407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGF5_9PHAE4.750e-15770.43Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
D7G1H9_ECTSI5.940e-8055.56Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5L0Y5_9PHAE6.330e-8042.02Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KCF3_9STRA8.050e-7555.27Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2N1B0_9STRA3.430e-7152.52Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2UAB3_9STRA4.300e-7153.88Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448ZM68_9STRA1.600e-7050.20Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S1ZRX7_9STRA3.230e-7050.84Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0SVE6_THAOC1.100e-6952.28Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
B5Y5K1_PHATC5.570e-6942.17Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig581contigH-paniculata_contig581:10116..12357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score448.7
Seed ortholog evalue2.5e-123
Seed eggNOG ortholog2880.D8LRR7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1424
Cds size1101
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig581.13407.1prot_H-paniculata_contig581.13407.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig581 10177..12095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.2303286-UTR-H-paniculata_contig581:10115..101761622930631.2303286-UTR-H-paniculata_contig581:10115..10176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig581 10116..10176 +
1691481380.8734493-UTR-H-paniculata_contig581:10115..101761691481380.8734493-UTR-H-paniculata_contig581:10115..10176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig581 10116..10176 +
1622930631.2852726-UTR-H-paniculata_contig581:12095..123571622930631.2852726-UTR-H-paniculata_contig581:12095..12357Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig581 12096..12357 +
1691481380.9196334-UTR-H-paniculata_contig581:12095..123571691481380.9196334-UTR-H-paniculata_contig581:12095..12357Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig581 12096..12357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.245354-CDS-H-paniculata_contig581:10176..105001622930631.245354-CDS-H-paniculata_contig581:10176..10500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 10177..10500 +
1691481380.8866496-CDS-H-paniculata_contig581:10176..105001691481380.8866496-CDS-H-paniculata_contig581:10176..10500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 10177..10500 +
1622930631.2610621-CDS-H-paniculata_contig581:10994..114501622930631.2610621-CDS-H-paniculata_contig581:10994..11450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 10995..11450 +
1691481380.9010334-CDS-H-paniculata_contig581:10994..114501691481380.9010334-CDS-H-paniculata_contig581:10994..11450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 10995..11450 +
1622930631.273797-CDS-H-paniculata_contig581:11774..120951622930631.273797-CDS-H-paniculata_contig581:11774..12095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 11775..12095 +
1691481380.9089384-CDS-H-paniculata_contig581:11774..120951691481380.9089384-CDS-H-paniculata_contig581:11774..12095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig581 11775..12095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig581.13407.1

>prot_H-paniculata_contig581.13407.1 ID=prot_H-paniculata_contig581.13407.1|Name=mRNA_H-paniculata_contig581.13407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=367bp
MLAVRCVLLFFAALMPCSLALFHKQIATDATRQSSACFTLNMIGFGPRSP
RVGVRTKEPLPEEQVPVAAGELPDDAFSQYPPLSTQQLATLKRAEDIDLG
HGETIPAEVVNRIKEKHGFKLFDEKLFPGIRLLHADPVVFEVDNFFTPEE
CDAYISMSTEKLPKGRKGSLKSMEIRSATTSSESQFQQQRTSTTWFHHYV
CAPELVAKASALLGVEDISLWEEPQTVRYRPGEKFSWHLDALPPSETGAS
KGGQRTATVLVYLTNLQGNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGG
EPGSPFDTRTLHAGEVVGKGKKAREKYIAQLWCHKKSYPAAVPEGNSHEA
AEEVIADYTRRWREQS*
back to top

mRNA from alignment at H-paniculata_contig581:10116..12357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig581.13407.1 ID=mRNA_H-paniculata_contig581.13407.1|Name=mRNA_H-paniculata_contig581.13407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2242bp|location=Sequence derived from alignment at H-paniculata_contig581:10116..12357+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCGATTGTCGGTGATACACAAAGTAAGTACTCTATCGTGGGAGAACTG ACTGCATTAGCATGTTAGCAGTCCGGTGCGTTTTGCTGTTTTTTGCAGCG CTGATGCCATGTAGTTTAGCACTATTCCACAAGCAAATAGCCACTGATGC TACTAGGCAAAGCTCGGCGTGTTTTACCCTCAACATGATAGGCTTCGGAC CTAGAAGCCCGAGAGTAGGTGTACGAACCAAGGAACCCCTCCCAGAAGAA CAAGTACCGGTGGCGGCTGGAGAGCTACCGGATGATGCATTTTCGCAATA TCCGCCCCTCTCGACACAGCAACTCGCAACACTGAAAAGGGCGGAGGACA TAGACTTGGGACATGGAGAAACGATCCCGGCGGAGGTATGTGACATACAC TCTGAACCCGTACAGTATACAACTGACATTTCTTCAGTTCAGTACAGACA GCGTAGTCGACAGCAATTCAGTACAGATATCGAGATAACAGTACATACCA CACACCGCGATCGCAGTTCAAGGTACATTCGTCACAGCCCACGTATACAT ACATGTACTGCGTGTAGAGGAAAGCCCGGACAGAGTACAGGTGTTCATTT TGTAAAGCACCTACGGGTAACCAACCTCCTCGGGAGAAGTGACGTCGTTG GAAATATGACCCTGTCGCAATCGAGTACTGTCTTCCAGCTACATTCTCAT CGGATTCCGTTTGGAATTTCCATATCAACGTTCGACCGTGCGTGGTGATC CCAAACACAGGTTATGGTGTACCAGCAATCACTTTGTTGTAGGTTGGGTT GATCTTGTATTCTTGGAACACCACCCATTCGTCAAACCCATGTCCTTTGC TTGTTTATTTGCAATTTCGAATATATCAGGTGGTGAATCGGATAAAAGAA AAACATGGCTTCAAGTTGTTCGACGAGAAGCTGTTTCCAGGCATTCGCCT TCTCCATGCTGACCCGGTCGTCTTTGAGGTCGACAATTTCTTCACCCCGG AAGAATGCGACGCGTATATCTCCATGAGCACAGAAAAACTACCTAAGGGT CGAAAAGGCTCACTAAAGTCGATGGAAATTCGCAGCGCAACCACTAGCTC CGAGTCGCAATTTCAGCAGCAGCGTACATCAACAACGTGGTTCCATCATT ATGTGTGCGCGCCGGAACTAGTGGCCAAAGCCTCGGCACTCTTGGGCGTT GAGGACATCTCGCTCTGGGAAGAACCACAAACTGTGAGATATAGACCGGG AGAGAAGTTTTCGTGGCACTTAGATGCGCTCCCTCCTTCTGAAACCGGGG CGTCGAAGGGCGGCCAGCGGACTGCGACTGTTCTGGTGAGAACCTCTGCC CTCGTCTTCCTCTGTCAATGCCTTCTTAGAGAAAGTGGAGCACAAAAGAA AAACATCATACCAAGACCTCACATGCCTTCTCATGATAAGATCCATGTCA AGGAATAGTTTCGTGCAGCGCAGGCACTCTACCTGAGTTTTTCTCCTGAA TATTTGCTTCGTCTGCACCATGATTTATGGCACAAAGTCTACCTCCAATA TTTCCGCCTTTTGGGAGTACAGTTCTTGTTGTAGTAGTCACTTTTCATCA GTGCGGCAGCTGTCCCCATTTATACGTGCATTCTTCGTTTATCTATGGCA CGGAATTAGGTTTATCTCACCAATCTGCAAGGGAACGCTGGTGGCGCGAC GGCATTTCGAGACCTGGGACCGCTGCGTGTTCGTCCCAAGAAGGGCAAGT GCTTGGTATTTTTCCCATCTTTCGGCGGAGAACCAGGCAGCCCATTTGAC ACCCGCACGTTGCACGCAGGGGAGGTGGTAGGAAAGGGAAAGAAGGCAAG GGAGAAATACATTGCGCAGCTATGGTGCCATAAGAAGAGCTATCCTGCTG CCGTTCCTGAGGGAAATTCCCACGAGGCAGCAGAAGAGGTCATCGCTGAC TACACGCGTCGGTGGCGGGAGCAAAGCTGACACATCTCCCATGTGTTGCT GCTCATGTCGAACTATCGAACTATCGAACCAAGTTGTAGTGGAACATTTT TATTTCGTAAGGAAAGAGGCGTGTCTTATTTCGTCGGCGGGATGAAAATG AAGATGGGACACAGAGGCACGTCTCTCTATAGAACACAGTGCACTATGTC CGATTATATTAAATAAGTTCTTTCTTTCTTTCCACCCTGAACATAACCAA TTTTTTATGATTCAGCAGTAATGAGAGGGAAGAAGCTTAAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig581:10116..12357+

>mRNA_H-paniculata_contig581.13407.1 ID=mRNA_H-paniculata_contig581.13407.1|Name=mRNA_H-paniculata_contig581.13407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at H-paniculata_contig581:10116..12357+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGCAGTCCGGTGCGTTTTGCTGTTTTTTGCAGCGCTGATGCCATG
TAGTTTAGCACTATTCCACAAGCAAATAGCCACTGATGCTACTAGGCAAA
GCTCGGCGTGTTTTACCCTCAACATGATAGGCTTCGGACCTAGAAGCCCG
AGAGTAGGTGTACGAACCAAGGAACCCCTCCCAGAAGAACAAGTACCGGT
GGCGGCTGGAGAGCTACCGGATGATGCATTTTCGCAATATCCGCCCCTCT
CGACACAGCAACTCGCAACACTGAAAAGGGCGGAGGACATAGACTTGGGA
CATGGAGAAACGATCCCGGCGGAGATGTTAGCAGTCCGGTGCGTTTTGCT
GTTTTTTGCAGCGCTGATGCCATGTAGTTTAGCACTATTCCACAAGCAAA
TAGCCACTGATGCTACTAGGCAAAGCTCGGCGTGTTTTACCCTCAACATG
ATAGGCTTCGGACCTAGAAGCCCGAGAGTAGGTGTACGAACCAAGGAACC
CCTCCCAGAAGAACAAGTACCGGTGGCGGCTGGAGAGCTACCGGATGATG
CATTTTCGCAATATCCGCCCCTCTCGACACAGCAACTCGCAACACTGAAA
AGGGCGGAGGACATAGACTTGGGACATGGAGAAACGATCCCGGCGGAGGT
GGTGAATCGGATAAAAGAAAAACATGGCTTCAAGTTGTTCGACGAGAAGC
TGTTTCCAGGCATTCGCCTTCTCCATGCTGACCCGGTCGTCTTTGAGGTC
GACAATTTCTTCACCCCGGAAGAATGCGACGCGTATATCTCCATGAGCAC
AGAAAAACTACCTAAGGGTCGAAAAGGCTCACTAAAGTCGATGGAAATTC
GCAGCGCAACCACTAGCTCCGAGTCGCAATTTCAGCAGCAGCGTACATCA
ACAACGTGGTTCCATCATTATGTGTGCGCGCCGGAACTAGTGGCCAAAGC
CTCGGCACTCTTGGGCGTTGAGGACATCTCGCTCTGGGAAGAACCACAAA
CTGTGAGATATAGACCGGGAGAGAAGTTTTCGTGGCACTTAGATGCGCTC
CCTCCTTCTGAAACCGGGGCGTCGAAGGGCGGCCAGCGGACTGCGACTGT
TCTGGTGGTGAATCGGATAAAAGAAAAACATGGCTTCAAGTTGTTCGACG
AGAAGCTGTTTCCAGGCATTCGCCTTCTCCATGCTGACCCGGTCGTCTTT
GAGGTCGACAATTTCTTCACCCCGGAAGAATGCGACGCGTATATCTCCAT
GAGCACAGAAAAACTACCTAAGGGTCGAAAAGGCTCACTAAAGTCGATGG
AAATTCGCAGCGCAACCACTAGCTCCGAGTCGCAATTTCAGCAGCAGCGT
ACATCAACAACGTGGTTCCATCATTATGTGTGCGCGCCGGAACTAGTGGC
CAAAGCCTCGGCACTCTTGGGCGTTGAGGACATCTCGCTCTGGGAAGAAC
CACAAACTGTGAGATATAGACCGGGAGAGAAGTTTTCGTGGCACTTAGAT
GCGCTCCCTCCTTCTGAAACCGGGGCGTCGAAGGGCGGCCAGCGGACTGC
GACTGTTCTGGTTTATCTCACCAATCTGCAAGGGAACGCTGGTGGCGCGA
CGGCATTTCGAGACCTGGGACCGCTGCGTGTTCGTCCCAAGAAGGGCAAG
TGCTTGGTATTTTTCCCATCTTTCGGCGGAGAACCAGGCAGCCCATTTGA
CACCCGCACGTTGCACGCAGGGGAGGTGGTAGGAAAGGGAAAGAAGGCAA
GGGAGAAATACATTGCGCAGCTATGGTGCCATAAGAAGAGCTATCCTGCT
GCCGTTCCTGAGGGAAATTCCCACGAGGCAGCAGAAGAGGTCATCGCTGA
CTACACGCGTCGGTGGCGGGAGCAAAGCTGAGTTTATCTCACCAATCTGC
AAGGGAACGCTGGTGGCGCGACGGCATTTCGAGACCTGGGACCGCTGCGT
GTTCGTCCCAAGAAGGGCAAGTGCTTGGTATTTTTCCCATCTTTCGGCGG
AGAACCAGGCAGCCCATTTGACACCCGCACGTTGCACGCAGGGGAGGTGG
TAGGAAAGGGAAAGAAGGCAAGGGAGAAATACATTGCGCAGCTATGGTGC
CATAAGAAGAGCTATCCTGCTGCCGTTCCTGAGGGAAATTCCCACGAGGC
AGCAGAAGAGGTCATCGCTGACTACACGCGTCGGTGGCGGGAGCAAAGCT
GA
back to top