mRNA_H-paniculata_contig58053.13404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58053.13404.1
Unique NamemRNA_H-paniculata_contig58053.13404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig58053.13404.1 vs. uniprot
Match: A0A6H5J9P8_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.980e-16
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 QLSAAVTTDILAVKSAVQGNLQKDRGLRAMLEMVFGLVVLVKLSPRLAWLFALVIPTAS 177
            +LSAAVT+D++  K AVQGNLQ+DRGLRA+LE + GL VL KLSPRLAW+F LVIP A+
Sbjct:  129 ELSAAVTSDVMVAKQAVQGNLQRDRGLRAVLETICGLAVLFKLSPRLAWVFGLVIPFAA 187
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BLAST of mRNA_H-paniculata_contig58053.13404.1 vs. uniprot
Match: D8LLV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.150e-11
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   31 LAVKSAVQGNLQKDRGLRAMLEMVFGLVVLVKLSPRLAWLFALVIPTAS 177
            +  K AVQGNLQ+DRGLRA+LE + GL VL KLSPRLAW+F LVIP A+
Sbjct:    1 MVAKQAVQGNLQRDRGLRAVLETICGLAVLFKLSPRLAWVFGLVIPFAA 49
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BLAST of mRNA_H-paniculata_contig58053.13404.1 vs. uniprot
Match: A0A4D9CSC1_9STRA (ABC transmembrane type-1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSC1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-8
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 QLSAAVTTDILAVKSAVQGNLQKDRGLRAMLEMVFGLVVLVKLSPRLAWLFALVIPTAS 177
            ++++ ++ DI  +K  + GNLQ+DRGLRA+LE V G ++L KL PRL  +F+LVIPT +
Sbjct:  146 EITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVA 204
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BLAST of mRNA_H-paniculata_contig58053.13404.1 vs. uniprot
Match: W7T665_9STRA (Abc transporter b family member 28 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T665_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.440e-8
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 QLSAAVTTDILAVKSAVQGNLQKDRGLRAMLEMVFGLVVLVKLSPRLAWLFALVIPTAS 177
            ++++ ++ DI  +K  + GNLQ+DRGLRA+LE V G ++L KL PRL  +F+LVIPT +
Sbjct:  273 EITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVA 331
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BLAST of mRNA_H-paniculata_contig58053.13404.1 vs. uniprot
Match: W7TNN3_9STRA (Abc transporter b family member 28 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNN3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.520e-8
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 QLSAAVTTDILAVKSAVQGNLQKDRGLRAMLEMVFGLVVLVKLSPRLAWLFALVIPTAS 177
            ++++ ++ DI  +K  + GNLQ+DRGLRA+LE V G ++L KL PRL  +F+LVIPT +
Sbjct:  273 EITSYLSQDISGLKDILYGNLQRDRGLRALLEAVVGTILLFKLQPRLGLVFSLVIPTVA 331
[Close]
BLAST of mRNA_H-paniculata_contig58053.13404.1 vs. uniprot
Match: A0A835ZKR2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKR2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.300e-6
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   52 QGNLQKDRGLRAMLEMVFGLVVLVKLSPRLAWLFALVIPTAS 177
            Q NLQKDRG+RA+LE V GLV+L  + P+LAW+F +VIP  +
Sbjct:  127 QTNLQKDRGVRALLESVLGLVLLTIMQPQLAWIFGVVIPVVA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58053.13404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5J9P8_9PHAE1.980e-1669.49ABC transmembrane type-1 domain-containing protein... [more]
D8LLV9_ECTSI2.150e-1169.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CSC1_9STRA1.390e-849.15ABC transmembrane type-1 domain-containing protein... [more]
W7T665_9STRA1.440e-849.15Abc transporter b family member 28 n=1 Tax=Nannoch... [more]
W7TNN3_9STRA1.520e-849.15Abc transporter b family member 28 n=1 Tax=Nannoch... [more]
A0A835ZKR2_9STRA4.300e-659.52P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58053contigH-paniculata_contig58053:346..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2e-09
Seed eggNOG ortholog2880.D8LLV9
KEGG koko:K05655,ko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.8467255-CDS-H-paniculata_contig58053:345..5221622930630.8467255-CDS-H-paniculata_contig58053:345..522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58053 346..522 +
1691481380.7162318-CDS-H-paniculata_contig58053:345..5221691481380.7162318-CDS-H-paniculata_contig58053:345..522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58053 346..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58053.13404.1prot_H-paniculata_contig58053.13404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58053 346..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58053.13404.1

>prot_H-paniculata_contig58053.13404.1 ID=prot_H-paniculata_contig58053.13404.1|Name=mRNA_H-paniculata_contig58053.13404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
QLSAAVTTDILAVKSAVQGNLQKDRGLRAMLEMVFGLVVLVKLSPRLAWL
FALVIPTAS
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mRNA from alignment at H-paniculata_contig58053:346..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58053.13404.1 ID=mRNA_H-paniculata_contig58053.13404.1|Name=mRNA_H-paniculata_contig58053.13404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig58053:346..522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTATCCGCGGCTGTTACAACCGACATTTTGGCGGTGAAATCTGCCGT
GCAAGGGAATTTGCAGAAGGACCGCGGGCTGAGGGCCATGCTGGAGATGG
TGTTCGGGCTGGTGGTATTGGTGAAGCTGTCCCCTCGGCTGGCGTGGTTG
TTCGCGCTCGTGATTCCGACTGCGTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig58053:346..522+

>mRNA_H-paniculata_contig58053.13404.1 ID=mRNA_H-paniculata_contig58053.13404.1|Name=mRNA_H-paniculata_contig58053.13404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig58053:346..522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTATCCGCGGCTGTTACAACCGACATTTTGGCGGTGAAATCTGCCGT
GCAAGGGAATTTGCAGAAGGACCGCGGGCTGAGGGCCATGCTGGAGATGG
TGTTCGGGCTGGTGGTATTGGTGAAGCTGTCCCCTCGGCTGGCGTGGTTG
TTCGCGCTCGTGATTCCGACTGCGTCTCAGTTATCCGCGGCTGTTACAAC
CGACATTTTGGCGGTGAAATCTGCCGTGCAAGGGAATTTGCAGAAGGACC
GCGGGCTGAGGGCCATGCTGGAGATGGTGTTCGGGCTGGTGGTATTGGTG
AAGCTGTCCCCTCGGCTGGCGTGGTTGTTCGCGCTCGTGATTCCGACTGC
GTCT
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