mRNA_H-paniculata_contig5805.13403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5805.13403.1
Unique NamemRNA_H-paniculata_contig5805.13403.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A7R8ZTV1_9CRUS (GTPase Der n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZTV1_9CRUS)

HSP 1 Score: 85.9 bits (211), Expect = 2.970e-18
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVKEWNRS-LENKLRYHVNFSVVPIVIFFR 165
            +YIKIK ITQL LYYPAFAFFCNHPKHVKE  R+ LENKLR H +FS VPI IFFR
Sbjct:  469 KYIKIKYITQLPLYYPAFAFFCNHPKHVKESYRNFLENKLRSHFDFSGVPISIFFR 524
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A7Y2FWG3_9BACT (GTPase Der n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y2FWG3_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 5.530e-16
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVKE-WNRSLENKLRYHVNFSVVPIVIFFR 165
            ++IKIK +TQL +YYPAFAFFCNHP HVK+ + + L+NKLR H +F+ VPI IFFR
Sbjct:  198 RFIKIKYVTQLPMYYPAFAFFCNHPDHVKQAYRQFLQNKLRQHFDFTGVPISIFFR 253
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A3M1ZCI0_9BACT (GTPase Der n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1ZCI0_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 1.950e-15
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVKEWNRS-LENKLRYHVNFSVVPIVIFFR 165
             +IKIK +TQL  YYPAFAFFCNHPKHVKE  R+ LEN+LR + NF+ VPI IFFR
Sbjct:  376 HFIKIKFVTQLPTYYPAFAFFCNHPKHVKENYRNYLENQLRKNFNFTGVPISIFFR 431
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A7C5L239_9BACT (GTPase Der n=1 Tax=Phaeodactylibacter sp. TaxID=1940289 RepID=A0A7C5L239_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 6.920e-15
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    4 YIKIKCITQLSLYYPAFAFFCNHPKHVKEWNRS-LENKLRYHVNFSVVPIVIFFR 165
            YIKIK  TQL+++YPAFAFFCNHPKHVKE  R+ LEN+LR   +FS VPI IFFR
Sbjct:  378 YIKIKYATQLAMHYPAFAFFCNHPKHVKESYRNYLENQLRKEYDFSGVPIDIFFR 432
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A7Y2MNP8_9BACT (GTPase Der n=2 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7Y2MNP8_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 1.780e-14
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVK-EWNRSLENKLRYHVNFSVVPIVIFFR 165
            ++IKIK ITQL  YYPAFA+FCNHP H+K  + + L+NK+R H NF+ VPI IFFR
Sbjct:  377 RFIKIKYITQLPTYYPAFAYFCNHPDHIKASYRQFLKNKMRTHFNFTGVPISIFFR 432
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A3M1L0V1_9BACT (GTPase Der n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1L0V1_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 2.440e-14
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVKEWNRS-LENKLRYHVNFSVVPIVIFFR 165
            ++IKIK +TQL  YYPAFAFFCNHPKHVK+  R+ LEN+LR H   + VPI IFFR
Sbjct:  376 RHIKIKYVTQLPTYYPAFAFFCNHPKHVKDSYRNYLENQLRQHFPLTGVPISIFFR 431
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: F4KV25_HALH1 (GTPase Der n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) TaxID=760192 RepID=F4KV25_HALH1)

HSP 1 Score: 74.3 bits (181), Expect = 3.350e-14
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVKE-WNRSLENKLRYHVNFSVVPIVIFFR 165
            ++IKIK +TQL L YPAFAFFCNHP HVKE + + LEN+LR + NF+ VPI IFFR
Sbjct:  377 RHIKIKYVTQLPLAYPAFAFFCNHPAHVKENYRQFLENQLRKNYNFAGVPISIFFR 432
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A098RXI8_9BACT (GTPase Der n=1 Tax=Phaeodactylibacter xiamenensis TaxID=1524460 RepID=A0A098RXI8_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 6.290e-14
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVKE-WNRSLENKLRYHVNFSVVPIVIFFR 165
            +++KIK +TQL  YYPAFAFFCN+PKHVK+ +   LEN+LR   NFS VPI +FFR
Sbjct:  377 RFVKIKYVTQLPTYYPAFAFFCNNPKHVKDNYRHYLENQLRKKFNFSGVPIGVFFR 432
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A5C6S1F7_9BACT (GTPase Der n=1 Tax=Phaeodactylibacter luteus TaxID=1564516 RepID=A0A5C6S1F7_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 6.510e-14
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVKE-WNRSLENKLRYHVNFSVVPIVIFFR 165
            +++KIK +TQL  YYPAFAFFCN+PKHVKE +   LEN+LR   +FS VPI IFFR
Sbjct:  425 RFVKIKYVTQLPTYYPAFAFFCNNPKHVKENYKHYLENQLRKQFDFSGVPIGIFFR 480
[Close]
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Match: A0A2E0VVG1_9BACT (GTPase Der n=3 Tax=Bacteroidetes TaxID=976 RepID=A0A2E0VVG1_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 8.600e-14
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 QYIKIKCITQLSLYYPAFAFFCNHPKHVKE-WNRSLENKLRYHVNFSVVPIVIFFR 165
            ++I IK + Q+ L YPAFAF+CNHPKH+KE +   LEN++R H NF+ VPI IFFR
Sbjct:  376 RFISIKFVQQIPLAYPAFAFYCNHPKHIKENYKNYLENRIREHFNFTGVPIAIFFR 431
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5805.13403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R8ZTV1_9CRUS2.970e-1878.57GTPase Der n=1 Tax=Cyprideis torosa TaxID=163714 R... [more]
A0A7Y2FWG3_9BACT5.530e-1664.29GTPase Der n=1 Tax=Saprospiraceae bacterium TaxID=... [more]
A0A3M1ZCI0_9BACT1.950e-1569.64GTPase Der n=1 Tax=Bacteroidetes bacterium TaxID=1... [more]
A0A7C5L239_9BACT6.920e-1570.91GTPase Der n=1 Tax=Phaeodactylibacter sp. TaxID=19... [more]
A0A7Y2MNP8_9BACT1.780e-1462.50GTPase Der n=2 Tax=Saprospiraceae bacterium TaxID=... [more]
A0A3M1L0V1_9BACT2.440e-1466.07GTPase Der n=1 Tax=Bacteroidetes bacterium TaxID=1... [more]
F4KV25_HALH13.350e-1466.07GTPase Der n=1 Tax=Haliscomenobacter hydrossis (st... [more]
A0A098RXI8_9BACT6.290e-1462.50GTPase Der n=1 Tax=Phaeodactylibacter xiamenensis ... [more]
A0A5C6S1F7_9BACT6.510e-1464.29GTPase Der n=1 Tax=Phaeodactylibacter luteus TaxID... [more]
A0A2E0VVG1_9BACT8.600e-1458.93GTPase Der n=3 Tax=Bacteroidetes TaxID=976 RepID=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5805contigH-paniculata_contig5805:5133..5297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.9
Seed ortholog evalue6.7e-12
Seed eggNOG ortholog760192.Halhy_1296
Preferred nameder
KEGG koko:K03977
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022607,GO:0022613,GO:0022618,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032794,GO:0034622,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042273,GO:0043021,GO:0043022,GO:0043023,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:0097216,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.GTPase that plays an essential role in the late steps of ribosome biogenesis
EggNOG OGs1IR18@117747,4NE2J@976,COG1160@1,COG1160@2
COG Functional cat.S
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.7756824-CDS-H-paniculata_contig5805:5132..52971622930630.7756824-CDS-H-paniculata_contig5805:5132..5297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5805 5133..5297 -
1691481380.6918747-CDS-H-paniculata_contig5805:5132..52971691481380.6918747-CDS-H-paniculata_contig5805:5132..5297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5805 5133..5297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5805.13403.1prot_H-paniculata_contig5805.13403.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5805 5133..5297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5805.13403.1

>prot_H-paniculata_contig5805.13403.1 ID=prot_H-paniculata_contig5805.13403.1|Name=mRNA_H-paniculata_contig5805.13403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
QYIKIKCITQLSLYYPAFAFFCNHPKHVKEWNRSLENKLRYHVNFSVVPI
VIFFR
back to top

mRNA from alignment at H-paniculata_contig5805:5133..5297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5805.13403.1 ID=mRNA_H-paniculata_contig5805.13403.1|Name=mRNA_H-paniculata_contig5805.13403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig5805:5133..5297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTATATCAAGATTAAATGTATTACTCAATTATCACTTTACTACCCAGC
ATTTGCTTTTTTCTGTAATCATCCGAAACATGTAAAGGAATGGAATCGCA
GCTTGGAAAATAAATTGAGATATCATGTTAATTTTTCTGTAGTTCCAATT
GTTATTTTCTTTAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5805:5133..5297-

>mRNA_H-paniculata_contig5805.13403.1 ID=mRNA_H-paniculata_contig5805.13403.1|Name=mRNA_H-paniculata_contig5805.13403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig5805:5133..5297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTATATCAAGATTAAATGTATTACTCAATTATCACTTTACTACCCAGC
ATTTGCTTTTTTCTGTAATCATCCGAAACATGTAAAGGAATGGAATCGCA
GCTTGGAAAATAAATTGAGATATCATGTTAATTTTTCTGTAGTTCCAATT
GTTATTTTCTTTAGGCAGTATATCAAGATTAAATGTATTACTCAATTATC
ACTTTACTACCCAGCATTTGCTTTTTTCTGTAATCATCCGAAACATGTAA
AGGAATGGAATCGCAGCTTGGAAAATAAATTGAGATATCATGTTAATTTT
TCTGTAGTTCCAATTGTTATTTTCTTTAGG
back to top