mRNA_H-paniculata_contig5805.13401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5805.13401.1
Unique NamemRNA_H-paniculata_contig5805.13401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: A0A6H5KR78_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR78_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.930e-27
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGEDDEGDGGGA 694
            Q+MQDSLGGNAKTLMFVNISPADYNQDET TALTYATRVK ITNTA K QDGEE+++LKE IR+L+AGE  +    GA
Sbjct:  117 QVMQDSLGGNAKTLMFVNISPADYNQDETVTALTYATRVKLITNTAEKQQDGEEVSRLKETIRRLRAGEQHDDRASGA 194
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BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: D8LSQ9_ECTSI (Similar to kinesin-C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ9_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.700e-25
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGE--DDEGDGG 688
            Q+MQDSLGGNAKTLMFVNISPADYNQDET TALTYATRVK ITNTA K QDGEE+++LKE IR+L+AGE  DD   GG
Sbjct: 1960 QVMQDSLGGNAKTLMFVNISPADYNQDETVTALTYATRVKLITNTAEKQQDGEEVSRLKETIRRLRAGEQHDDRASGG 2037
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BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: A0A067C7Z7_SAPPC (Kinesin-like protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C7Z7_SAPPC)

HSP 1 Score: 109 bits (272), Expect = 6.680e-24
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGED 670
            Q+MQDSLGGNAKTLMFVNISPADYNQ+ET T+L+YA+RVK ITN ANKN D EE+AKLK +I++LKAG D
Sbjct:  193 QLMQDSLGGNAKTLMFVNISPADYNQEETQTSLSYASRVKLITNNANKNSDSEEVAKLKAIIKQLKAGHD 262
[Close]
BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: V4AUP4_LOTGI (Kinesin motor domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AUP4_LOTGI)

HSP 1 Score: 103 bits (258), Expect = 1.140e-23
Identity = 52/69 (75.36%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:  464 MMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGED 670
            +MQDSLGGNAKTLMFVNISPADYNQDE+  +LTYA+RVK ITN A+KN D +EIA+LK +I+KLK GED
Sbjct:   39 LMQDSLGGNAKTLMFVNISPADYNQDESVISLTYASRVKLITNDASKNSDNKEIARLKSIIQKLKQGED 107
[Close]
BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: A0A485K483_9STRA (Aste57867_962 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K483_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.560e-23
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGED 670
            Q+MQDSLG  AKTLMFVNISPADYNQDET T+L+YA RVK ITN ANKN D +E+AKLK++I++LKAG D
Sbjct:   21 QLMQDSLGRKAKTLMFVNISPADYNQDETQTSLSYAPRVKLITNQANKNSDTKEVAKLKQIIKQLKAGHD 90
[Close]
BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: E4X356_OIKDI (Kinesin-like protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4X356_OIKDI)

HSP 1 Score: 109 bits (273), Expect = 2.200e-23
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGE 667
            ++MQDSLGGNAKTLMFVNISP +YNQDET T+LTYA RVK I NTA+KN D +E+AKLKE+IRKLKAGE
Sbjct:  284 ELMQDSLGGNAKTLMFVNISPVEYNQDETVTSLTYAARVKEIKNTASKNADNKEVAKLKEIIRKLKAGE 352
[Close]
BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: A0A067BRV6_SAPPC (Kinesin-like protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRV6_SAPPC)

HSP 1 Score: 109 bits (272), Expect = 3.360e-23
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGED 670
            Q+MQDSLGGNAKTLMFVNISPADYNQ+ET T+L+YA+RVK ITN ANKN D EE+AKLK +I++LKAG D
Sbjct:  286 QLMQDSLGGNAKTLMFVNISPADYNQEETQTSLSYASRVKLITNNANKNSDSEEVAKLKAIIKQLKAGHD 355
[Close]
BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: A0A6G0W547_9STRA (Kinesin motor domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W547_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.740e-23
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGED 670
            Q+MQDSLGGNAKTLMFVNISPADYNQ+ET T+L+YA+RVK ITN ANKN D EE+AKLK++I++LKAGED
Sbjct: 1026 QLMQDSLGGNAKTLMFVNISPADYNQEETQTSLSYASRVKLITNQANKNSDSEEVAKLKQIIKQLKAGED 1095
[Close]
BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: A0A485K2X3_9STRA (Aste57867_72 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2X3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.450e-23
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGED 670
            Q+MQDSLGGNAKTLMFVNISPADYNQDET T+L+YA+RVK ITN ANKN D EE+AKLK++I++LKAG D
Sbjct: 1378 QLMQDSLGGNAKTLMFVNISPADYNQDETQTSLSYASRVKLITNQANKNSDSEEVAKLKQIIKQLKAGHD 1447
[Close]
BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Match: A0A1V9ZIU4_9STRA (Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIU4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.370e-22
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 2 
Query:  461 QMMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQDGEEIAKLKEMIRKLKAGED 670
            Q+MQDSLGGNAKTLMFVNISPADYNQ+ET T+L+YA+RVK ITN ANKN D EE+AKLK +I++LKAG D
Sbjct:  607 QLMQDSLGGNAKTLMFVNISPADYNQEETQTSLSYASRVKLITNNANKNSDSEEVAKLKAIIKQLKAGHD 676
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5805.13401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR78_9PHAE1.930e-2776.92Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LSQ9_ECTSI2.700e-2579.49Similar to kinesin-C n=1 Tax=Ectocarpus siliculosu... [more]
A0A067C7Z7_SAPPC6.680e-2477.14Kinesin-like protein n=1 Tax=Saprolegnia parasitic... [more]
V4AUP4_LOTGI1.140e-2375.36Kinesin motor domain-containing protein n=1 Tax=Lo... [more]
A0A485K483_9STRA1.560e-2374.29Aste57867_962 protein n=1 Tax=Aphanomyces stellatu... [more]
E4X356_OIKDI2.200e-2378.26Kinesin-like protein n=1 Tax=Oikopleura dioica Tax... [more]
A0A067BRV6_SAPPC3.360e-2377.14Kinesin-like protein n=1 Tax=Saprolegnia parasitic... [more]
A0A6G0W547_9STRA3.740e-2378.57Kinesin motor domain-containing protein n=1 Tax=Ap... [more]
A0A485K2X3_9STRA5.450e-2378.57Aste57867_72 protein n=1 Tax=Aphanomyces stellatus... [more]
A0A1V9ZIU4_9STRA2.370e-2277.14Kinesin-like protein n=1 Tax=Achlya hypogyna TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5805contigH-paniculata_contig5805:767..2064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.8e-24
Seed eggNOG ortholog2880.D8LSQ9
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size770
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5805.13401.1prot_H-paniculata_contig5805.13401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5805 1230..1642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.637314-UTR-H-paniculata_contig5805:766..8771622930630.637314-UTR-H-paniculata_contig5805:766..877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5805 767..877 +
1691481380.650546-UTR-H-paniculata_contig5805:766..8771691481380.650546-UTR-H-paniculata_contig5805:766..877Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5805 767..877 +
1622930630.736048-UTR-H-paniculata_contig5805:1642..20641622930630.736048-UTR-H-paniculata_contig5805:1642..2064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5805 1643..2064 +
1691481380.6816237-UTR-H-paniculata_contig5805:1642..20641691481380.6816237-UTR-H-paniculata_contig5805:1642..2064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5805 1643..2064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.6619654-CDS-H-paniculata_contig5805:1229..13761622930630.6619654-CDS-H-paniculata_contig5805:1229..1376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5805 1230..1376 +
1691481380.66205-CDS-H-paniculata_contig5805:1229..13761691481380.66205-CDS-H-paniculata_contig5805:1229..1376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5805 1230..1376 +
1622930630.7085762-CDS-H-paniculata_contig5805:1552..16421622930630.7085762-CDS-H-paniculata_contig5805:1552..1642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5805 1553..1642 +
1691481380.6715407-CDS-H-paniculata_contig5805:1552..16421691481380.6715407-CDS-H-paniculata_contig5805:1552..1642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5805 1553..1642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5805.13401.1

>prot_H-paniculata_contig5805.13401.1 ID=prot_H-paniculata_contig5805.13401.1|Name=mRNA_H-paniculata_contig5805.13401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MMQDSLGGNAKTLMFVNISPADYNQDETATALTYATRVKSITNTANKNQD
GEEIAKLKEMIRKLKAGEDDEGDGGGAA*
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mRNA from alignment at H-paniculata_contig5805:767..2064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5805.13401.1 ID=mRNA_H-paniculata_contig5805.13401.1|Name=mRNA_H-paniculata_contig5805.13401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1298bp|location=Sequence derived from alignment at H-paniculata_contig5805:767..2064+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAGGAGGCCCAGAGTATCAACAAGTCTCTATCTGCGCTCGGAGACGT
TATTTCCGCGCTCTCGACGGGCGAGAAGTTCGTGCCGTACCGCAACAATA
AACTCACCCAGGTAAAGGGGCGGTAGGATATACAATACGTATTTCGATGT
TCGCTGTCATTCCAATGAGCTTGGTGGTACTATGCGGTAGCACTTGAATT
CAAGCTTTCTGCGTACCTGAAGCATATTTTCATGTAGCGAATTCCTGACT
GTCTGTCTACGCTGTCCACTCCGCGTGAGGGTGCCGATGGTCTTCGCCAG
TCCTGCAACCTGTGCGGCAATCTGCCCACGTGTGAACAACGACTAAACCC
CAAGTCGTAAGAGATTAGTTCCCATTCCGCGGGAAACTAAATTATATTGT
TGTCCTTTCTCCGTGTCCCACCCCCTGCTGCTGCTGCTGCTGCTGCCTCG
CTGACCTTGTCAGATGATGCAAGATTCGCTCGGCGGGAACGCCAAGACGT
TGATGTTCGTCAACATCTCGCCGGCGGACTACAATCAAGACGAGACGGCC
ACCGCCCTCACGTACGCCACGCGTGTGAAGTCAATCACCAACACCGCCAA
CAAGAACCAGGTGCAATGTGTGTGTGGTTGAGGCCCTGAGAATGAACAAT
CGGAAGCTCCCAACCGTTGTACACTTGGATTTGTCCTTGTAGAAGTACGC
AACGACGGTACTTATATTGAACGTATATAACAAAAAGTCTTCTCGCTTGT
TCTGGCCCACTATTATTGTATTGTACGCCTGGACAGGATGGTGAAGAGAT
CGCAAAACTGAAAGAAATGATTCGCAAGCTCAAGGCAGGAGAAGACGACG
AGGGCGACGGAGGCGGCGCCGCGTGACAACCATCACGCTGTTCTCGGAAG
AAATTGCATGTGCTCTCGGGCACCGGTATCGGGGAAGACGATGGAGCTCT
GATGTTCAGCGCCCAGACAGATCAGCGCATCACCTTCTTGCGACTCACTT
GTGTCTTGGGCGCTACGATACTGGTCCAAAGTCTGGCATACAGTCTATTG
TTGGTGCACTCTTGGATTTTACTACAGTCCAAGCTCTGCCCTACAGTATG
GCATTGATGCACGCACGTGCGTCCTGCTTCCACTGCCTTCCTGTCGACTG
GTGTAACAGAAACAAGCACCATATAATCGTATAGCCCCTTCTTATCGCGG
GCCTTTTTGATACTGCACCGCCCTTTGATATTGTGCCGTGCGGTCTGCCA
CAGATGATTTTTTATTTCGTGACAAAAGGTGAGACCACGGGTGCCGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig5805:767..2064+

>mRNA_H-paniculata_contig5805.13401.1 ID=mRNA_H-paniculata_contig5805.13401.1|Name=mRNA_H-paniculata_contig5805.13401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig5805:767..2064+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCAAGATTCGCTCGGCGGGAACGCCAAGACGTTGATGTTCGTCAA
CATCTCGCCGGCGGACTACAATCAAGACGAGACGGCCACCGCCCTCACGT
ACGCCACGCGTGTGAAGTCAATCACCAACACCGCCAACAAGAACCAGATG
ATGCAAGATTCGCTCGGCGGGAACGCCAAGACGTTGATGTTCGTCAACAT
CTCGCCGGCGGACTACAATCAAGACGAGACGGCCACCGCCCTCACGTACG
CCACGCGTGTGAAGTCAATCACCAACACCGCCAACAAGAACCAGGATGGT
GAAGAGATCGCAAAACTGAAAGAAATGATTCGCAAGCTCAAGGCAGGAGA
AGACGACGAGGGCGACGGAGGCGGCGCCGCGTGAGATGGTGAAGAGATCG
CAAAACTGAAAGAAATGATTCGCAAGCTCAAGGCAGGAGAAGACGACGAG
GGCGACGGAGGCGGCGCCGCGTGA
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