mRNA_H-paniculata_contig5805.13402.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5805.13402.1
Unique NamemRNA_H-paniculata_contig5805.13402.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5805.13402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5805contigH-paniculata_contig5805:3400..4154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size755
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.5697472-CDS-H-paniculata_contig5805:3399..38131622930630.5697472-CDS-H-paniculata_contig5805:3399..3813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5805 3400..3813 +
1691481380.631062-CDS-H-paniculata_contig5805:3399..38131691481380.631062-CDS-H-paniculata_contig5805:3399..3813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5805 3400..3813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.590121-UTR-H-paniculata_contig5805:3813..41541622930630.590121-UTR-H-paniculata_contig5805:3813..4154Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5805 3814..4154 +
1691481380.6409304-UTR-H-paniculata_contig5805:3813..41541691481380.6409304-UTR-H-paniculata_contig5805:3813..4154Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5805 3814..4154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5805.13402.1prot_H-paniculata_contig5805.13402.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5805 3400..3813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5805.13402.1

>prot_H-paniculata_contig5805.13402.1 ID=prot_H-paniculata_contig5805.13402.1|Name=mRNA_H-paniculata_contig5805.13402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
ADCYPFPSNTQRIRCGPCLGVLAVIDPAVSLSRLHCLNQAIYRPTRCHRV
SSALRIHAIASAASICTDIRSPTPSASFSFGCSSPGSTRCCSAHAVFQAQ
VNSKTRHIAATAARQFMARPLSSQDAIAQSLSASRTQ*
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mRNA from alignment at H-paniculata_contig5805:3400..4154+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5805.13402.1 ID=mRNA_H-paniculata_contig5805.13402.1|Name=mRNA_H-paniculata_contig5805.13402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=755bp|location=Sequence derived from alignment at H-paniculata_contig5805:3400..4154+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGACTGCTACCCGTTCCCCTCCAACACCCAACGAATCCGGTGCGGCCC
ATGTCTTGGCGTTCTCGCTGTCATTGACCCCGCGGTGTCGCTTTCTAGGC
TCCATTGCTTGAATCAAGCGATTTATCGACCCACCCGATGCCACAGGGTT
TCTTCCGCCTTGCGCATACATGCGATCGCGTCGGCTGCCTCCATATGCAC
CGATATCCGCTCCCCCACCCCCTCCGCCTCTTTTTCCTTTGGTTGCAGTT
CCCCAGGGTCGACTAGATGCTGCAGTGCGCACGCCGTTTTTCAAGCCCAG
GTCAATTCCAAGACCAGGCATATCGCTGCCACGGCTGCCCGACAGTTTAT
GGCCCGCCCGCTCTCCTCTCAAGATGCCATTGCCCAGTCTCTTAGCGCCA
GCCGCACCCAGTAGTGGGTTGACGATATGCTCCTTGGTGTGCGTGACGAG
AATTTGAGGCTTAGCACACGTCGCGTACTCTGGGTCCCAGGTGTTCCGCG
GGCACATCCACATTTTCTTCTGATTTCATGGTAGCATAATCACGTGGTGG
GTGCGTACGGGTAAGCTAGAGGTTGAGGCAATCCATTTGTGTGGGAATGG
TAAGGTTATAAGTGGTACGAATATCGATAGCGAGATCTCAAGAGTTTTTC
TTTACGATCTCGTAGGGGTTGTTTGGTGTGTATGTCTATCCGACGTGACT
GAGGTTGTCGCGTAAGAATATATCAGAATCGCGAACATGGCAGTCGACCA
TTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5805:3400..4154+

>mRNA_H-paniculata_contig5805.13402.1 ID=mRNA_H-paniculata_contig5805.13402.1|Name=mRNA_H-paniculata_contig5805.13402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig5805:3400..4154+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGACTGCTACCCGTTCCCCTCCAACACCCAACGAATCCGGTGCGGCCC
ATGTCTTGGCGTTCTCGCTGTCATTGACCCCGCGGTGTCGCTTTCTAGGC
TCCATTGCTTGAATCAAGCGATTTATCGACCCACCCGATGCCACAGGGTT
TCTTCCGCCTTGCGCATACATGCGATCGCGTCGGCTGCCTCCATATGCAC
CGATATCCGCTCCCCCACCCCCTCCGCCTCTTTTTCCTTTGGTTGCAGTT
CCCCAGGGTCGACTAGATGCTGCAGTGCGCACGCCGTTTTTCAAGCCCAG
GTCAATTCCAAGACCAGGCATATCGCTGCCACGGCTGCCCGACAGTTTAT
GGCCCGCCCGCTCTCCTCTCAAGATGCCATTGCCCAGTCTCTTAGCGCCA
GCCGCACCCAGTAGGCCGACTGCTACCCGTTCCCCTCCAACACCCAACGA
ATCCGGTGCGGCCCATGTCTTGGCGTTCTCGCTGTCATTGACCCCGCGGT
GTCGCTTTCTAGGCTCCATTGCTTGAATCAAGCGATTTATCGACCCACCC
GATGCCACAGGGTTTCTTCCGCCTTGCGCATACATGCGATCGCGTCGGCT
GCCTCCATATGCACCGATATCCGCTCCCCCACCCCCTCCGCCTCTTTTTC
CTTTGGTTGCAGTTCCCCAGGGTCGACTAGATGCTGCAGTGCGCACGCCG
TTTTTCAAGCCCAGGTCAATTCCAAGACCAGGCATATCGCTGCCACGGCT
GCCCGACAGTTTATGGCCCGCCCGCTCTCCTCTCAAGATGCCATTGCCCA
GTCTCTTAGCGCCAGCCGCACCCAGTAG
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