prot_H-paniculata_contig5804.13399.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig5804.13399.1
Unique Name	prot_H-paniculata_contig5804.13399.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	262

Homology

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BLAST of mRNA_H-paniculata_contig5804.13399.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.000e-26
Identity = 101/284 (35.56%), Postives = 144/284 (50.70%), Query Frame = 0

Query:    2 IVVNFLWLKLSAGLELDNLVITSRQPAQWLSASRKPNQQISAHSSSPRASSETARMSSSVSGTXXXXXXXXXXXXXXXXXXXXRGKRTVAAAGVASAGAPDDRRDYFRGPWDVTVAPSLQAVLVGVVARPEVMYGVPAARIAFEALVYMIMLVVYVSVLYNTRSGVLSVAEMVLYVWILGMCVAQVRI----------------------LSERNRVRREERGFLHAPCS--LYDARISTTMLLASLVCRLVDYGQDPTGEERTSRAENGEEWGLFEISVVLQA 261
            +V++ LW KL+AG+ELD +      PAQW             ++  P  S+ +A   +  + T      XXXXXXXXXXXXXX         GV    +           WD+T+APSLQAVLVGV   P+V Y VPAAR+A +A+VY++ML +Y   LY    G +   E++LY+W+L MC ++V                        L +R+RV+R  +      CS   +  + ST +L+A+++CRL DY QD  G+     A +GE W  F+  V L A
Sbjct:  317 LVLDLLWAKLTAGVELD-VHSCGANPAQW-------------YARLPGPSAGSAPAPAVTAATPVHNTAXXXXXXXXXXXXXXXXXXATRVEGVDPRRSSPGHLKNAAASWDITIAPSLQAVLVGVATGPDVFYRVPAARLALDAVVYLLMLAIYTVALYRVEPGSVDPWEVLLYIWVLSMCFSEVATGVWGVVGDADTDPREGGTAAEPLGQRHRVKRSRKRGSLCSCSSPFFGGKFSTVVLMAAMMCRLGDYVQDSGGD-----AVDGE-WRCFQGFVALLA 580

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BLAST of mRNA_H-paniculata_contig5804.13399.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.270e-17
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 0

Query:  112 WDVTVAPSLQAVLVGVVARPEVMYGVPAARIAFEALVYMIMLVVYVSVLYNTRSGVLSVAEMVLYVWILGMCVAQVR-----ILSERNRVRRE 199
            WD+T+APSLQAVLVGV +RP+V Y VPAAR+A +A+VY++ML +Y   LY    G +   E++LY+W+L MC ++V      ++ + +  RRE
Sbjct: 1159 WDITIAPSLQAVLVGVASRPDVFYRVPAARLALDAVVYLLMLAIYTVALYRVEPGSIGPWEVLLYIWVLSMCFSEVTTGAGGVVGDADTERRE 1251

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5804.13399.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5804.13399.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FN03_ECTSI	4.000e-26	35.56	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L4C8_9PHAE	1.270e-17	47.31	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..141
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 173..191
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 162..172
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 192..262
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 142..161
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..14 score: 0.52
None	No IPR available	TMHMM	TMhelix		coord: 137..159
None	No IPR available	TMHMM	TMhelix		coord: 174..191

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5804	contig	H-paniculata_contig5804:2745..8583 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5804.13399.1	mRNA_H-paniculata_contig5804.13399.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig5804 2744..8583 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig5804.13399.1 ID=prot_H-paniculata_contig5804.13399.1|Name=mRNA_H-paniculata_contig5804.13399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=262bp
RIVVNFLWLKLSAGLELDNLVITSRQPAQWLSASRKPNQQISAHSSSPRA
SSETARMSSSVSGTTTLAAAQQASMATTNAAAALRGKRTVAAAGVASAGA
PDDRRDYFRGPWDVTVAPSLQAVLVGVVARPEVMYGVPAARIAFEALVYM
IMLVVYVSVLYNTRSGVLSVAEMVLYVWILGMCVAQVRILSERNRVRREE
RGFLHAPCSLYDARISTTMLLASLVCRLVDYGQDPTGEERTSRAENGEEW
GLFEISVVLQAG