mRNA_H-paniculata_contig5800.13396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI) HSP 1 Score: 495 bits (1274), Expect = 3.760e-173 Identity = 236/254 (92.91%), Postives = 249/254 (98.03%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
MGKVIRGQRKGKGGIFTSHTRLRKGPVK RKLDYAERHGYIKGV+KD++HEPGRGAPLAKVQF NPYKF+RDNEL+VAVEGMY+GQFIYCGKKASLTVGNI+P+ SMPEGTV SSIEAKVGDRGTFARCSGDY+V+ISHDE+KGTSK+RLPSGSKKTI S+CRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE
Sbjct: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA) HSP 1 Score: 443 bits (1140), Expect = 9.860e-153 Identity = 204/254 (80.31%), Postives = 233/254 (91.73%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
MGKVIRG RKG+G +FTSHTRLRKGPVK RKLDYAERHGYIKGV+K+I+HEP RGAP+AK+QF NPY++++DNEL+VA EGMYTG FIYCGKKA LTVGNILP+ SMPEG+V+ ++E++ GDRG+ ARCSGDY+V+++HDEDKGT+KIRLPSGSKKTI S CRAMVGI+AGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST RLASAGQKVGLIAARRTGRLRGI+ E
Sbjct: 1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA) HSP 1 Score: 441 bits (1134), Expect = 8.030e-152 Identity = 208/250 (83.20%), Postives = 231/250 (92.40%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
MGKVIRGQRKGKG +F SHT+ RKG VKFRKLDYAERHGY+KGV+K I+HEPGRGAPLA V F NPY+F++D EL+VAVEGMY+G FIYCGKKA LT+GNI+P+ +MPEGTV +IEA GDRGTFARCSGDY+V+ISHDEDKGTS+IRLPSGSKKTI+S CRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRLASAG+KVGLIAARRTGRLRGI+
Sbjct: 1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIK 250
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN) HSP 1 Score: 416 bits (1070), Expect = 3.990e-142 Identity = 192/250 (76.80%), Postives = 222/250 (88.80%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
MGKVIRG RKGKG IFT+HTRLRKGPVK RK DYAE+ GY+KGV+K IVHE GRGAP+AKVQF N Y+F+RDNEL VA EG+Y G FIYCG KA L VGN+LP++++PEGTV+ + EA+ GDRG FARCSGDY+V+++HDED GT+K+RLPSG KKT++S CRAM+GIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST R+ SAG+KVGLIAARRTGRLRG++
Sbjct: 1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLK 250
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA) HSP 1 Score: 416 bits (1068), Expect = 8.310e-142 Identity = 188/250 (75.20%), Postives = 225/250 (90.00%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
MGKV+RG RKGKG +F SHTRLRKGP K R+LD++ER GY+KG++K+I+HEPGRGAPLA++QF NPYK+++DNEL+V EGMY+GQFI+CGKKA L+VGNILPL +PEGTVV ++E+ +GDRG + SG Y V+I+ DEDKGTS+IRLPSG+KKT+ ++CRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct: 1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA) HSP 1 Score: 413 bits (1061), Expect = 1.640e-140 Identity = 195/254 (76.77%), Postives = 220/254 (86.61%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
MGKV RGQRKGKG IF SHTRLR G VK R LDYAER G+ KGVIKD VHEPGRGAP+AKVQFHN Y+++RDN L VAVEGMYTGQF+YCGKKA LTVGNILPL +MPEGT+V +IEAK GDRG A+CSGDY+V+++HDEDKGT+++RLPSGSKKT+ ++CRA VGIVAGGGRTDKP+LKAGRA+HK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST R AG+K GLIAARRTGRL G + E
Sbjct: 20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAGKKVIDE 273
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA) HSP 1 Score: 409 bits (1052), Expect = 2.070e-139 Identity = 191/255 (74.90%), Postives = 224/255 (87.84%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR-TEKE 762
MG+VIRGQRKG GGIF SH + RKG FR DY ER GYIKGVIK+I+H+PGRGAPLA+V F +PYK+R ++EL++A EGMYTG FIY GKKA++ VGNILPL+ +PEGT+V ++EA++GD+G FARCSGDY+VI++HDEDKG +KIRLPSGSKKTI S CRAMVG+VAGGGRTDKP+LKAGRAYHK+RVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST R AG+KVGLIAARRTGRLRGI+ T+K+
Sbjct: 1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDKD 255
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD) HSP 1 Score: 403 bits (1036), Expect = 5.510e-137 Identity = 184/250 (73.60%), Postives = 223/250 (89.20%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
MG+VIRGQRKG GGIF SHT R+G FR LDY ERHGYIKGV+K+I+H+ GRGAPLA+V + +PY+++ ++EL++A EGMYTGQFIY G KA++TVGNILPL+++PEGT+V ++EA+VGDRG+FAR SGDY+VI++HDEDKG +K+RLPSGSKKT+ S CRAM+G+VAGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST R A +G+KVGLIAARRTGRLRGI+
Sbjct: 1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIK 250
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA) HSP 1 Score: 402 bits (1033), Expect = 1.690e-136 Identity = 184/250 (73.60%), Postives = 218/250 (87.20%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
MGKV++ RKGKG +F SHTRLRKG V+ R LD+ ER GYIKG++KDI+HEPGRGAPLAKVQF+N Y++++DN L+VA EGMYTGQFI+CGKKA L VGNILPL +PEGTVV ++E GDRG + SG Y V+I+ DEDKGT++IRLPSG+KKT+ ++CRAMVGIVAGGGRTDKP+LKAGRAYHK+RVKRNEWP +RGVA NPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct: 1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC) HSP 1 Score: 399 bits (1026), Expect = 1.870e-135 Identity = 187/254 (73.62%), Postives = 221/254 (87.01%), Query Frame = 1
Query: 1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
MGKVIR RKG GGIF SHT+L K PVK RKLDYAE+HGYIKGV+K+IVHE GRGAP+A+VQF N Y+F+RD E VAVEG+Y+GQFI+ GKKA+L +GN+LPL+ +PEGTVVS++EA+ GDRG+FAR SG Y+VI++ DED+GT+KIRLPSG+KKT+ S R ++GI+AGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST R A AG+KVGL+AARRTGRLRGI+ E
Sbjct: 1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5800.13396.1 >prot_H-paniculata_contig5800.13396.1 ID=prot_H-paniculata_contig5800.13396.1|Name=mRNA_H-paniculata_contig5800.13396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHback to top mRNA from alignment at H-paniculata_contig5800:10320..13237+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5800.13396.1 ID=mRNA_H-paniculata_contig5800.13396.1|Name=mRNA_H-paniculata_contig5800.13396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2918bp|location=Sequence derived from alignment at H-paniculata_contig5800:10320..13237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5800:10320..13237+ >mRNA_H-paniculata_contig5800.13396.1 ID=mRNA_H-paniculata_contig5800.13396.1|Name=mRNA_H-paniculata_contig5800.13396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig5800:10320..13237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |