mRNA_H-paniculata_contig5800.13396.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5800.13396.1
Unique NamemRNA_H-paniculata_contig5800.13396.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 3.760e-173
Identity = 236/254 (92.91%), Postives = 249/254 (98.03%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIRGQRKGKGGIFTSHTRLRKGPVK RKLDYAERHGYIKGV+KD++HEPGRGAPLAKVQF NPYKF+RDNEL+VAVEGMY+GQFIYCGKKASLTVGNI+P+ SMPEGTV SSIEAKVGDRGTFARCSGDY+V+ISHDE+KGTSK+RLPSGSKKTI S+CRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 443 bits (1140), Expect = 9.860e-153
Identity = 204/254 (80.31%), Postives = 233/254 (91.73%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIRG RKG+G +FTSHTRLRKGPVK RKLDYAERHGYIKGV+K+I+HEP RGAP+AK+QF NPY++++DNEL+VA EGMYTG FIYCGKKA LTVGNILP+ SMPEG+V+ ++E++ GDRG+ ARCSGDY+V+++HDEDKGT+KIRLPSGSKKTI S CRAMVGI+AGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RLASAGQKVGLIAARRTGRLRGI+   E
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 441 bits (1134), Expect = 8.030e-152
Identity = 208/250 (83.20%), Postives = 231/250 (92.40%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKVIRGQRKGKG +F SHT+ RKG VKFRKLDYAERHGY+KGV+K I+HEPGRGAPLA V F NPY+F++D EL+VAVEGMY+G FIYCGKKA LT+GNI+P+ +MPEGTV  +IEA  GDRGTFARCSGDY+V+ISHDEDKGTS+IRLPSGSKKTI+S CRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRLASAG+KVGLIAARRTGRLRGI+
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIK 250          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 416 bits (1070), Expect = 3.990e-142
Identity = 192/250 (76.80%), Postives = 222/250 (88.80%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKVIRG RKGKG IFT+HTRLRKGPVK RK DYAE+ GY+KGV+K IVHE GRGAP+AKVQF N Y+F+RDNEL VA EG+Y G FIYCG KA L VGN+LP++++PEGTV+ + EA+ GDRG FARCSGDY+V+++HDED GT+K+RLPSG KKT++S CRAM+GIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLK 250          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 416 bits (1068), Expect = 8.310e-142
Identity = 188/250 (75.20%), Postives = 225/250 (90.00%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKV+RG RKGKG +F SHTRLRKGP K R+LD++ER GY+KG++K+I+HEPGRGAPLA++QF NPYK+++DNEL+V  EGMY+GQFI+CGKKA L+VGNILPL  +PEGTVV ++E+ +GDRG   + SG Y V+I+ DEDKGTS+IRLPSG+KKT+ ++CRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 413 bits (1061), Expect = 1.640e-140
Identity = 195/254 (76.77%), Postives = 220/254 (86.61%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKV RGQRKGKG IF SHTRLR G VK R LDYAER G+ KGVIKD VHEPGRGAP+AKVQFHN Y+++RDN L VAVEGMYTGQF+YCGKKA LTVGNILPL +MPEGT+V +IEAK GDRG  A+CSGDY+V+++HDEDKGT+++RLPSGSKKT+ ++CRA VGIVAGGGRTDKP+LKAGRA+HK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R   AG+K GLIAARRTGRL G +   E
Sbjct:   20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAGKKVIDE 273          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 2.070e-139
Identity = 191/255 (74.90%), Postives = 224/255 (87.84%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR-TEKE 762
            MG+VIRGQRKG GGIF SH + RKG   FR  DY ER GYIKGVIK+I+H+PGRGAPLA+V F +PYK+R ++EL++A EGMYTG FIY GKKA++ VGNILPL+ +PEGT+V ++EA++GD+G FARCSGDY+VI++HDEDKG +KIRLPSGSKKTI S CRAMVG+VAGGGRTDKP+LKAGRAYHK+RVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST  R   AG+KVGLIAARRTGRLRGI+ T+K+
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDKD 255          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD)

HSP 1 Score: 403 bits (1036), Expect = 5.510e-137
Identity = 184/250 (73.60%), Postives = 223/250 (89.20%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MG+VIRGQRKG GGIF SHT  R+G   FR LDY ERHGYIKGV+K+I+H+ GRGAPLA+V + +PY+++ ++EL++A EGMYTGQFIY G KA++TVGNILPL+++PEGT+V ++EA+VGDRG+FAR SGDY+VI++HDEDKG +K+RLPSGSKKT+ S CRAM+G+VAGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A +G+KVGLIAARRTGRLRGI+
Sbjct:    1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIK 250          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 1.690e-136
Identity = 184/250 (73.60%), Postives = 218/250 (87.20%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKV++  RKGKG +F SHTRLRKG V+ R LD+ ER GYIKG++KDI+HEPGRGAPLAKVQF+N Y++++DN L+VA EGMYTGQFI+CGKKA L VGNILPL  +PEGTVV ++E   GDRG   + SG Y V+I+ DEDKGT++IRLPSG+KKT+ ++CRAMVGIVAGGGRTDKP+LKAGRAYHK+RVKRNEWP +RGVA NPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250          
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 399 bits (1026), Expect = 1.870e-135
Identity = 187/254 (73.62%), Postives = 221/254 (87.01%), Query Frame = 1
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVHEPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGNILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRLPSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIR  RKG GGIF SHT+L K PVK RKLDYAE+HGYIKGV+K+IVHE GRGAP+A+VQF N Y+F+RD E  VAVEG+Y+GQFI+ GKKA+L +GN+LPL+ +PEGTVVS++EA+ GDRG+FAR SG Y+VI++ DED+GT+KIRLPSG+KKT+ S  R ++GI+AGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A AG+KVGL+AARRTGRLRGI+   E
Sbjct:    1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5800.13396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U3_ECTSI3.760e-17392.91Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A835ZD66_9STRA9.860e-15380.31Translation protein SH3-like domain-containing pro... [more]
A0A7S2V227_9STRA8.030e-15283.20Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
F0YEL9_AURAN3.990e-14276.80Ribosomal_L2_C domain-containing protein n=1 Tax=A... [more]
A0A7R9UAP5_9STRA8.310e-14275.20Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WUG0_9STRA1.640e-14076.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A418F530_9STRA2.070e-13974.90Ribosomal_L2_C domain-containing protein n=14 Tax=... [more]
K3X5U7_GLOUD5.510e-13773.60Ribosomal_L2_C domain-containing protein n=5 Tax=E... [more]
A0A7S1U069_9STRA1.690e-13673.60Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
I2CPH3_NANGC1.870e-13573.62Large subunit ribosomal protein L8e n=1 Tax=Nannoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5800contigH-paniculata_contig5800:10320..13237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score496.5
Seed ortholog evalue7.4e-138
Seed eggNOG ortholog2880.D7G8U3
Preferred nameRPL8
KEGG koko:K02938,ko:K09228
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904,GO:1990932
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0090@1,KOG2309@2759
Ec32 ortholog descriptionRibosomal protein L2, C-terminal
Ec32 orthologEc-15_004240.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
Exons4
Model size1417
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5800.13396.1prot_H-paniculata_contig5800.13396.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5800 10320..12585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.1112397-CDS-H-paniculata_contig5800:10319..105991622930630.1112397-CDS-H-paniculata_contig5800:10319..10599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5800 10320..10599 +
1691481380.428083-CDS-H-paniculata_contig5800:10319..105991691481380.428083-CDS-H-paniculata_contig5800:10319..10599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5800 10320..10599 +
1622930630.1279337-CDS-H-paniculata_contig5800:11432..115091622930630.1279337-CDS-H-paniculata_contig5800:11432..11509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5800 11433..11509 +
1691481380.440272-CDS-H-paniculata_contig5800:11432..115091691481380.440272-CDS-H-paniculata_contig5800:11432..11509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5800 11433..11509 +
1622930630.1402524-CDS-H-paniculata_contig5800:11799..120051622930630.1402524-CDS-H-paniculata_contig5800:11799..12005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5800 11800..12005 +
1691481380.449621-CDS-H-paniculata_contig5800:11799..120051691481380.449621-CDS-H-paniculata_contig5800:11799..12005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5800 11800..12005 +
1622930630.155046-CDS-H-paniculata_contig5800:12383..125851622930630.155046-CDS-H-paniculata_contig5800:12383..12585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5800 12384..12585 +
1691481380.4601326-CDS-H-paniculata_contig5800:12383..125851691481380.4601326-CDS-H-paniculata_contig5800:12383..12585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5800 12384..12585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.172391-UTR-H-paniculata_contig5800:12585..132371622930630.172391-UTR-H-paniculata_contig5800:12585..13237Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5800 12586..13237 +
1691481380.4699128-UTR-H-paniculata_contig5800:12585..132371691481380.4699128-UTR-H-paniculata_contig5800:12585..13237Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5800 12586..13237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5800.13396.1

>prot_H-paniculata_contig5800.13396.1 ID=prot_H-paniculata_contig5800.13396.1|Name=mRNA_H-paniculata_contig5800.13396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=255bp
MGKVIRGQRKGKGGIFTSHTRLRKGPVKFRKLDYAERHGYIKGVIKDIVH
EPGRGAPLAKVQFHNPYKFRRDNELVVAVEGMYTGQFIYCGKKASLTVGN
ILPLASMPEGTVVSSIEAKVGDRGTFARCSGDYSVIISHDEDKGTSKIRL
PSGSKKTIRSECRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVR
GVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR
TEKE*
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mRNA from alignment at H-paniculata_contig5800:10320..13237+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5800.13396.1 ID=mRNA_H-paniculata_contig5800.13396.1|Name=mRNA_H-paniculata_contig5800.13396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2918bp|location=Sequence derived from alignment at H-paniculata_contig5800:10320..13237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTAAAGTTATCCGTGGACAGAGGAAGGGTAAGGGAGGCATCTTCAC CTCTCACACCCGTCTCAGGAAGGGCCCCGTGAAGTTCCGCAAGCTTGACT ATGCGGAGCGCCACGGGTACATCAAAGGGGTCATCAAGGACATCGTCCAC GAACCTGGAAGGGGTGCGCCCCTGGCCAAGGTGCAGTTCCACAACCCCTA CAAGTTCAGGCGTGACAACGAGCTGGTCGTGGCCGTGGAGGGCATGTACA CTGGACAGTTCATCTACTGTGGGAAGAAGGGTGTGTGTGCATTCAATGCC GTGTTGTGGTGTGCTGGGTGTTGAGAAACGGTGCTGGGGTTCTGTGCTGT CCTTTGTGCGGCTGCAAAGTGAACTTCCTCCCTGCACTGCTAAAACAAGA CACTTGATGGGTGGCGCCCGATAACAGCTAGCCAGCCTGGTCCTGCTTTG CATGTCAGCGGTGCAGTCTTGGAATTGACGATTATTGATGGGTGGTCCCC GACAACAACCTGTCGCGTGGAGTATAAGCGATGCTACACCCCTACCGCTA TTGTGCGGATTCGGGGCGTAGCTAGTTTTGTTCCTTCGGCCCCGGCCAGT GACAAATAAGAGTGCAGTAGTAACCGTTCTTCTCTGTCCTCTGGCGCTCG TTTCTCCTATTCAGCCCTTCGAGTGGTTCACCTGCAAATTGTTGAGTGTT ACCCGAGGAATGCATGAGAGAAACTAGATATCAGAGGGCAGAAGTTGTGC AGTTGCTTTGCCTTGACTGATGGATGGCGTCCGAAAACAGCCAAAGCGCG CGCGGATAGGAATCGTTAGACACTCGCTTACCTCGAGTAATGTACAGTCA GCAGACGCCTAGATTGTAAATGTCGAGTTTTCCCTTGTGTTCGAGTATGA CCCCGTGTCACCTGTGTTCATCGTTGTGTGTTCTTTTATTTGTCTTGCGC TTCGCCTATTGTTTGACGATCCAACGATGCCACCCTCCCCAACCGAATGG TGATGGGTGTTTCGTGTGTGTGGGGTTTCTTCTAATTCCTGATTCAATTC CTTACCCTTCATCCTGTCCGATGGCATGACCACTTGTGTGCTCCTTTTTA CTCAAACTATCAGCTTCGCTCACGGTGGGCAACATCCTTCCCCTGGCTTC GATGCCTGAGGGAACCGTCGTGTCTTCCATCGAGGCGAAGGTGACGAGAA CTTTGTGTCATTTGAGTGTTTGCATGCTGGTACATCTTTACCACCCCAAT ATGGGAGTTGTCGAGTAAATATATGAATGTGTAAAACAGTTGACCGTGCA GTAGATCGCTCAGCCGAAGTAGAAGAGTTCATGAAGCAAATGGATATTGG TATTTTGAGCCGTGTCGACCTACGCTACTTGCGTGCGTATACCTGCATCC CGAGAGGGTTAGACGAAAGCGAGCTTGAAATGTATACTTGATGGAAACCC CGTCGTCTGTCCCGTGCATTCTTTTGCTAGGTTGGTGACCGTGGTACATT CGCGCGCTGCTCGGGAGACTACTCCGTGATTATCTCTCATGATGAGGACA AGGGAACGAGCAAAATCCGCCTGCCGTCTGGCTCGAAGAAGACCATTCGA TCCGAGTGCCGCGCCATGGTCGGTATCGTTGCAGGCGGTGGAAGGACCGA CAAGCCGATGCTCAAGGCCGGACGAGCCTACCACAAGTAAGTCTGGCACA CTAGAATGGTGAAGAGCACAGTTGAACTGTCAATGCCCCCTTTTCCAGTG TATTTATTTTTAGGCATGTAGTGTCCAAGGTCTTCCCTGTAAACAAACCA TTGAGGGATTGCGTTACAGATGAGGAATTCTAACAGCGTGACACAGATGA GCACCCGGATTCATAATAAAATGAAACAGGTCAGCGAAAAGACGTCATGC CACTCTGTTGGGTACTGTTCTCGACAGTCGGGAAAGTGGTCTATCCTAGT GGTTTTCAATTCGATGAAAAATGTTTCAACCCTGCACAGGTGTGTTGCCG ACTAGGACCTCGAAGTTGACCTGTAGTCTGTTTTCTATTCTTCATTTTTG CGATTTTTTTGCAGGTTCCGCGTCAAGCGCAATGAGTGGCCCCATGTGCG TGGTGTAGCAATGAACCCTGTGGAGCACCCTTTCGGTGGTGGTAACCACC AGCACATTGGGCACCCGTCTACGGCGAACCGCCTTGCATCCGCTGGTCAG AAGGTTGGTCTCATCGCGGCCCGCCGTACTGGTCGCCTGAGAGGTATCCG CACGGAGAAGGAATAAGCGAAGGACAAATGACTCGAGGAAACCATTTTTT GGTTGGAATTTTGAGGGGTCGTGTAGATATTCTGAAACGGTTCCTTAATT TTCTGTCGCCCTGTTGTCGTTGCGCTTCCTTGCGGATGCTGACTGCCCTT GCCGTCGAGAGTTGGAGTTCGAGGGTGGTTCTACATGGTAATGTGGGCGG GTAGGATAGCATGGCGGTTGGCTAATGTTGCATTGGCGAATTGTCCTGGT CGAGAATGTTGCGTCTCAAGGGAGGTTTGACCCGTCTTTCTCTGGTAGTT TCTCTCGTCGCTCGCCACGTGAGAGAAACCTGCAGTCTGCGTGAGCAGCC GGAAGCACAAATGAAAACGTTGAAAAAAAATCTGATAACGGTCTTCGGCC GATCCCGTGCGTTGTGATGGGGTCCTTACATGTGTACGGTTAAAGCTGAC CTTGCCATGTTCACAATTCGAAGCCGTCTTGCATTGTTTTGAGCAAAATG ATTCAAGTACCGAAAGGTTCAACACTAGGCATTGAGCGCTGGTTCCGACT TGACTCTCCTTCGTTTTCCTTTTGCATCTTCCATAGTAAATGAAAAATGG CGGTTCACCTACTACACTAATGGGAAGGAGTAATGACATTCCGACCCACG AAGAGTCATCGAATGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5800:10320..13237+

>mRNA_H-paniculata_contig5800.13396.1 ID=mRNA_H-paniculata_contig5800.13396.1|Name=mRNA_H-paniculata_contig5800.13396.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig5800:10320..13237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTAAAGTTATCCGTGGACAGAGGAAGGGTAAGGGAGGCATCTTCAC
CTCTCACACCCGTCTCAGGAAGGGCCCCGTGAAGTTCCGCAAGCTTGACT
ATGCGGAGCGCCACGGGTACATCAAAGGGGTCATCAAGGACATCGTCCAC
GAACCTGGAAGGGGTGCGCCCCTGGCCAAGGTGCAGTTCCACAACCCCTA
CAAGTTCAGGCGTGACAACGAGCTGGTCGTGGCCGTGGAGGGCATGTACA
CTGGACAGTTCATCTACTGTGGGAAGAAGGATGGGTAAAGTTATCCGTGG
ACAGAGGAAGGGTAAGGGAGGCATCTTCACCTCTCACACCCGTCTCAGGA
AGGGCCCCGTGAAGTTCCGCAAGCTTGACTATGCGGAGCGCCACGGGTAC
ATCAAAGGGGTCATCAAGGACATCGTCCACGAACCTGGAAGGGGTGCGCC
CCTGGCCAAGGTGCAGTTCCACAACCCCTACAAGTTCAGGCGTGACAACG
AGCTGGTCGTGGCCGTGGAGGGCATGTACACTGGACAGTTCATCTACTGT
GGGAAGAAGGCTTCGCTCACGGTGGGCAACATCCTTCCCCTGGCTTCGAT
GCCTGAGGGAACCGTCGTGTCTTCCATCGAGGCGAAGCTTCGCTCACGGT
GGGCAACATCCTTCCCCTGGCTTCGATGCCTGAGGGAACCGTCGTGTCTT
CCATCGAGGCGAAGGTTGGTGACCGTGGTACATTCGCGCGCTGCTCGGGA
GACTACTCCGTGATTATCTCTCATGATGAGGACAAGGGAACGAGCAAAAT
CCGCCTGCCGTCTGGCTCGAAGAAGACCATTCGATCCGAGTGCCGCGCCA
TGGTCGGTATCGTTGCAGGCGGTGGAAGGACCGACAAGCCGATGCTCAAG
GCCGGACGAGCCTACCACAAGTTGGTGACCGTGGTACATTCGCGCGCTGC
TCGGGAGACTACTCCGTGATTATCTCTCATGATGAGGACAAGGGAACGAG
CAAAATCCGCCTGCCGTCTGGCTCGAAGAAGACCATTCGATCCGAGTGCC
GCGCCATGGTCGGTATCGTTGCAGGCGGTGGAAGGACCGACAAGCCGATG
CTCAAGGCCGGACGAGCCTACCACAAGTTCCGCGTCAAGCGCAATGAGTG
GCCCCATGTGCGTGGTGTAGCAATGAACCCTGTGGAGCACCCTTTCGGTG
GTGGTAACCACCAGCACATTGGGCACCCGTCTACGGCGAACCGCCTTGCA
TCCGCTGGTCAGAAGGTTGGTCTCATCGCGGCCCGCCGTACTGGTCGCCT
GAGAGGTATCCGCACGGAGAAGGAATAAGTTCCGCGTCAAGCGCAATGAG
TGGCCCCATGTGCGTGGTGTAGCAATGAACCCTGTGGAGCACCCTTTCGG
TGGTGGTAACCACCAGCACATTGGGCACCCGTCTACGGCGAACCGCCTTG
CATCCGCTGGTCAGAAGGTTGGTCTCATCGCGGCCCGCCGTACTGGTCGC
CTGAGAGGTATCCGCACGGAGAAGGAATAA
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