prot_H-paniculata_contig5796.13389.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5796.13389.1
Unique Nameprot_H-paniculata_contig5796.13389.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length219
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5796.13389.1 vs. uniprot
Match: A0A6H5KTS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTS5_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.940e-33
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = 0 
Query:   19 QDMRMYVLGTGNSKSKEQKRFERATEGAVKNLAQRVFPLQELADAIRTCLNNMHGPEWHCMVGK--DFSVNVRYWRARCFVFEGSEMKVMVFKSAPPAPEAAPSSTQM-PLDGEP 130
            QD++M+ L  GN K+KEQ RFE+AT+ AV+ LA+   P +ELA +IR CLNNMHGPEWHC+ GK   FSV+VRYWR + F+FE   ++++VF+SAPPAP+   SS Q    D EP
Sbjct:   15 QDLKMHSLDVGNKKTKEQMRFEQATKEAVQTLARLGMPPEELAGSIRRCLNNMHGPEWHCVAGKVKAFSVHVRYWRGKSFLFEAEGLRIIVFQSAPPAPDDPLSSPQAHEQDAEP 129
[Close]
BLAST of mRNA_H-paniculata_contig5796.13389.1 vs. uniprot
Match: D7FJY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY1_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.860e-25
Identity = 70/168 (41.67%), Postives = 89/168 (52.98%), Query Frame = 0 
Query:   55 FPLQELADAIRTCLNNMHGPEWHCMVGKDFSVNVRYWRARCFVFEGSEMKVMVFKSAPPAPEAAPSSTQMPLDGEPGAEVTNTPTA---DRVSIKVLRSEMQLAYQKQVLKMAEVAAXXXXXXXXXXXXXXXXXXXIKALLTESAGPVWHAVGMKGGGEWGCAVAHEE 219
             P +ELA +IR CLNNM                   WR + F+FE   ++++VF+SAPPAP+   SS Q     E  AE    PTA   +R SIKVLRSEM+  YQK+VL MA  +A                   +KA LTE  GPVWH +  +G G+WG +VAHEE
Sbjct:    1 MPPEELAASIRRCLNNM-------------------WRGKSFLFEAEGLRIIVFQSAPPAPDDPLSSPQA---HEQDAEAKQGPTAKGPERTSIKVLRSEMEQGYQKRVLAMASASAREHGKTGDLNSIVAA----LKASLTEFTGPVWHVMATRGAGDWGFSVAHEE 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5796.13389.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTS5_9PHAE2.940e-3355.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJY1_ECTSI1.860e-2541.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 19..110
e-value: 0.0031
score: 18.2
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 38..110
e-value: 6.3E-11
score: 42.5
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 36..111
IPR037177Dynein light chain superfamilyGENE3D3.30.740.10coord: 20..111
e-value: 2.2E-10
score: 42.5
IPR037177Dynein light chain superfamilySUPERFAMILY54648DLCcoord: 52..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5796contigH-paniculata_contig5796:2025..11561 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5796.13389.1mRNA_H-paniculata_contig5796.13389.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5796 1749..11561 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5796.13389.1 ID=prot_H-paniculata_contig5796.13389.1|Name=mRNA_H-paniculata_contig5796.13389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MGKKSVKRISAAARASPWQDMRMYVLGTGNSKSKEQKRFERATEGAVKNL
AQRVFPLQELADAIRTCLNNMHGPEWHCMVGKDFSVNVRYWRARCFVFEG
SEMKVMVFKSAPPAPEAAPSSTQMPLDGEPGAEVTNTPTADRVSIKVLRS
EMQLAYQKQVLKMAEVAATAAAESTDNTDDVASTVSTIKALLTESAGPVW
HAVGMKGGGEWGCAVAHEE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
IPR037177DLC_sf