mRNA_H-paniculata_contig57889.13380.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57889.13380.1
Unique NamemRNA_H-paniculata_contig57889.13380.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: D7FY72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY72_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.690e-28
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:   19 RYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEV 207
            RYYLVQRAREAGVIGIVVGTLGVQRYG+VVRS+R+MIE AGRKAYTLAVGK+NVAKLANFAEV
Sbjct:  531 RYYLVQRAREAGVIGIVVGTLGVQRYGSVVRSVRKMIEDAGRKAYTLAVGKVNVAKLANFAEV 593
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: K8YSW8_NANGC (Diphthamide biosynthesis (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSW8_NANGC)

HSP 1 Score: 92.4 bits (228), Expect = 1.690e-21
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   19 RYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEVSS 213
            RYYLVQRAR+A V G+VVGTLGV RY +VV ++RR+I  AG+KAYTL +GK+N AKLANFAE+ +
Sbjct:   58 RYYLVQRARDASVFGVVVGTLGVGRYMSVVAAVRRLIARAGKKAYTLLIGKLNAAKLANFAEIET 122
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: A0A7S3XP23_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP23_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 2.730e-21
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 HRLSLPRYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEV 207
            +R  + R+YLVQRAREA ++G+VVGTLGV  Y + VR LR ++E AGRKAYT AVGK+NVAKLANFAEV
Sbjct:  353 NRALMRRFYLVQRAREASIVGLVVGTLGVAGYLSQVRRLRALVEAAGRKAYTFAVGKLNVAKLANFAEV 421
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: W7TR02_9STRA (Diphthamide biosynthesis n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR02_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.250e-20
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   19 RYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEVSS 213
            RYYLVQRAR+A V G+VVGTLGV RY +VV ++RR+I  AG+KAYTL +GK+N AKLANFAE+ +
Sbjct:  303 RYYLVQRARDASVFGVVVGTLGVGRYMSVVAAVRRLIARAGKKAYTLLIGKLNAAKLANFAEIET 367
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: A0A433P605_9FUNG (Putative diphthamide synthesis protein-domain-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433P605_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 7.460e-19
Identity = 38/63 (60.32%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   19 RYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEV 207
            RY+LVQ+A++A VIGIVVGTLGV  Y +++  L+R+I GAG+K+YT  +GK+NVAK+ANF E+
Sbjct:   27 RYFLVQKAKDADVIGIVVGTLGVASYMDIIDHLKRLIRGAGKKSYTFVMGKLNVAKMANFMEI 89
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: R7T6L4_CAPTE (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T6L4_CAPTE)

HSP 1 Score: 87.4 bits (215), Expect = 1.720e-18
Identity = 40/71 (56.34%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 HRLSLPRYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEVSS 213
            +RL + RYY+V++ ++A +IGI+VGTLGV  Y  V+  L+ +IE AG+K+YT  VGK+NVAKLANFAEV +
Sbjct:  255 NRLLMKRYYMVEKTKDAQIIGILVGTLGVANYLQVIARLKTLIEAAGKKSYTFVVGKLNVAKLANFAEVEA 325
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: A0A1E1XCM1_9ACAR (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 (Fragment) n=1 Tax=Amblyomma aureolatum TaxID=187763 RepID=A0A1E1XCM1_9ACAR)

HSP 1 Score: 87.0 bits (214), Expect = 2.290e-18
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 HRLSLPRYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEV 207
            +R  + RYYL++RA++A V+GI+VGTLGV+ Y +VV  L+R+I  AG++ Y LA+GK+NVAKLANF EV
Sbjct:  255 NRQLMRRYYLIERAKDASVVGILVGTLGVRNYLSVVEHLKRVIRAAGKRPYVLAIGKLNVAKLANFQEV 323
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: A0A2G8K3X8_STIJA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K3X8_STIJA)

HSP 1 Score: 86.7 bits (213), Expect = 2.810e-18
Identity = 38/71 (53.52%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 HRLSLPRYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEVSS 213
            ++L + RYY+++RA++AG++GI+VGTLGV +Y ++V  L+ +++ AG+K YT AVGK+NVAKLANF EV +
Sbjct:  294 NKLLMKRYYMIERAKDAGIVGILVGTLGVAKYLDIVGHLKTIMKKAGKKYYTFAVGKLNVAKLANFMEVQA 364
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BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: T1JHR2_STRMM (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JHR2_STRMM)

HSP 1 Score: 86.7 bits (213), Expect = 3.330e-18
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 HRLSLPRYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEV 207
            +R  + RYYLV+R R+A ++GI+VGTLGV  Y +++  L+ ++  AG+KAYTLA+GKINVAKLANF E+
Sbjct:  254 NRTLMKRYYLVERTRDANIVGILVGTLGVANYLSIISHLKSIVRKAGKKAYTLAMGKINVAKLANFPEI 322
[Close]
BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Match: DPH2_SCHPO (2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=DPH2_SCHPO)

HSP 1 Score: 86.7 bits (213), Expect = 3.430e-18
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   19 RYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKAYTLAVGKINVAKLANFAEV 207
            RY LVQR R+AGVIGIV+GTLGV RY +V+  LR+MI  AG+K Y LAVGK+N AKLANF E+
Sbjct:  264 RYALVQRCRDAGVIGIVIGTLGVHRYLHVLNQLRKMILNAGKKPYMLAVGKLNPAKLANFQEI 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57889.13380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY72_ECTSI2.690e-2892.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YSW8_NANGC1.690e-2167.69Diphthamide biosynthesis (Fragment) n=1 Tax=Nannoc... [more]
A0A7S3XP23_HETAK2.730e-2168.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TR02_9STRA3.250e-2067.69Diphthamide biosynthesis n=2 Tax=Monodopsidaceae T... [more]
A0A433P605_9FUNG7.460e-1960.32Putative diphthamide synthesis protein-domain-cont... [more]
R7T6L4_CAPTE1.720e-1856.342-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A1E1XCM1_9ACAR2.290e-1857.972-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A2G8K3X8_STIJA2.810e-1853.522-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
T1JHR2_STRMM3.330e-1856.522-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
DPH2_SCHPO3.430e-1868.252-(3-amino-3-carboxypropyl)histidine synthase subu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57889contigH-paniculata_contig57889:155..376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue4.6e-24
Seed eggNOG ortholog2880.D7FY72
Preferred nameDPH2
KEGG koko:K17866
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016740,GO:0016765,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090560,GO:1900247,GO:1901564,GO:2000112,GO:2000765
EggNOG free text desc.Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2
EggNOG OGsCOG1736@1,KOG2648@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930627.7111638-CDS-H-paniculata_contig57889:154..3761622930627.7111638-CDS-H-paniculata_contig57889:154..376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57889 155..376 -
1691481379.2294242-CDS-H-paniculata_contig57889:154..3761691481379.2294242-CDS-H-paniculata_contig57889:154..376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57889 155..376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57889.13380.1prot_H-paniculata_contig57889.13380.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57889 155..376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57889.13380.1

>prot_H-paniculata_contig57889.13380.1 ID=prot_H-paniculata_contig57889.13380.1|Name=mRNA_H-paniculata_contig57889.13380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
HRLSLPRYYLVQRAREAGVIGIVVGTLGVQRYGNVVRSLRRMIEGAGRKA
YTLAVGKINVAKLANFAEVSSSK*
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mRNA from alignment at H-paniculata_contig57889:155..376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57889.13380.1 ID=mRNA_H-paniculata_contig57889.13380.1|Name=mRNA_H-paniculata_contig57889.13380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig57889:155..376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCGTCTCTCCCTCCCAAGGTATTACCTCGTGCAACGCGCGCGAGAGGC
AGGAGTGATCGGTATTGTTGTCGGTACCCTAGGCGTGCAGCGGTATGGCA
ACGTGGTCCGCTCGCTCCGCCGGATGATCGAAGGCGCCGGGCGCAAGGCA
TACACGCTGGCAGTGGGAAAGATTAACGTTGCCAAGTTGGCCAACTTTGC
CGAGGTAAGCTCTTCTAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig57889:155..376-

>mRNA_H-paniculata_contig57889.13380.1 ID=mRNA_H-paniculata_contig57889.13380.1|Name=mRNA_H-paniculata_contig57889.13380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig57889:155..376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCGTCTCTCCCTCCCAAGGTATTACCTCGTGCAACGCGCGCGAGAGGC
AGGAGTGATCGGTATTGTTGTCGGTACCCTAGGCGTGCAGCGGTATGGCA
ACGTGGTCCGCTCGCTCCGCCGGATGATCGAAGGCGCCGGGCGCAAGGCA
TACACGCTGGCAGTGGGAAAGATTAACGTTGCCAAGTTGGCCAACTTTGC
CGAGGTAAGCTCTTCTAAGTAACACCGTCTCTCCCTCCCAAGGTATTACC
TCGTGCAACGCGCGCGAGAGGCAGGAGTGATCGGTATTGTTGTCGGTACC
CTAGGCGTGCAGCGGTATGGCAACGTGGTCCGCTCGCTCCGCCGGATGAT
CGAAGGCGCCGGGCGCAAGGCATACACGCTGGCAGTGGGAAAGATTAACG
TTGCCAAGTTGGCCAACTTTGCCGAGGTAAGCTCTTCTAAGTAA
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