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Homology
BLAST of mRNA_H-paniculata_contig5788.13379.1 vs. uniprot
Match: D7G045_ECTSI (Similar to fidipidine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G045_ECTSI) HSP 1 Score: 248 bits (632), Expect = 4.720e-72 Identity = 183/417 (43.88%), Postives = 237/417 (56.83%), Query Frame = 2
Query: 434 MQEEAEQAREYSCKLAQEISRLERIEHGLLPDQRSTLETLRRLIATSTALEHQEQSVLEEFRSREAALRAEIDDFRGGAATGATTGRAPSAESSGQEGAAVGQGKSQEASASGASSVRGGS-------------------------EDPLAEPRLDEGNDDALQTSREDELLQQQ----------------------------QRQRQHQQHPAGAITPIATPSLEGKALLAEGLHRIEAAHEAAAAEREMLATRLSRLRLAVARRQREEDATPGHAELLQYLLRFEELGKHAREREKQLRGCQAERSTLARTREILANESRALEAIASGVDDAAHKHKAARETFVRQLTGMIKGVEDSISNQARLLEASRDRRRAAEETREAVAEEKKRFLKGARDLAEACMKYEGLKAHLSLMRR 1525
M+EEAEQAR+Y KLAQE++RL RI L PD+ ++LE LRRL+AT T +E QEQ+ LE+ ++REAALRAEI +F TG TT E G G +G+ + +DPLA +R+ H++ PA LEGKAL AEGLHRIEAA+E AAAERE A RLSRLRLAVARRQREED GHAELLQYLLRFEELG+H+ ER++QLR C+AERSTL+ TRE+LA ++R LE IA GV++A+ K RE ++RQ+ G+++ VEDS+ +Q RLL+ R RR AEE + +V E++KRF G ++L++ C +YE L AHL+LMRR
Sbjct: 1 MEEEAEQARDYGNKLAQEMARLGRITRTLAPDESASLEKLRRLVATLTEIERQEQAALEQGKAREAALRAEIAEF-----TGETT------EDVGGGGDGLGEKPAAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVLEKTVDDPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAERKANHRKKPA----------LEGKALFAEGLHRIEAAYEVAAAEREESAARLSRLRLAVARRQREEDVALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERSTLSLTRELLATQARLLETIAGGVEEASKGGKGVREAYLRQIKGIVESVEDSLEDQTRLLDNVRRRRHVAEELQASVREDRKRFFAGTKELSDECYRYESLNAHLALMRR 396
BLAST of mRNA_H-paniculata_contig5788.13379.1 vs. uniprot
Match: A0A6H5JTA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA4_9PHAE) HSP 1 Score: 240 bits (612), Expect = 2.470e-69 Identity = 179/383 (46.74%), Postives = 224/383 (58.49%), Query Frame = 2
Query: 326 EHQEDVRKLRARGGELEERLAVARSGLASALERREFMQEEAEQAREYSCKLAQEISRLERIEHGLLPDQRSTLETLRRLIATSTALEHQEQSVLEEFRSREAALRAEIDDFRGGAATGATTGR------------------------APSAESSGQEGAAVGQGKS-----------------------QEASASGASSVRGGSEDPLAEPRLDEGNDDALQTSREDELLQQQQRQRQHQQHPAGAITPIATPSLEGKALLAEGLHRIEAAHEAAAAEREMLATRLSRLRLAVARRQREEDATPGHAELLQYLLRFEELGKHAREREKQLRGCQAERSTLARTREILANESRALEAIASGVDDAAHKHKAARETFVRQLTGMI 1333
+ Q +V LR RG ELEERL AR L SA ERREFM+EEAEQAR+Y KLAQE++RL RI L PD+ ++LE LRRL+AT T +E QEQ+ LE+ ++REAALR EI +F TG TTG A + +G+ G G+G+ QE SGA ++ G A P G L+T+ +L PA P+LEGKAL AEGLHRIEAA+E A AERE A RLSRLRLAVARRQREEDA GHAELLQYLLRFEELG+H+ ER++QLR C+AER L+ TRE+LA ++R LE IA GV++A+ K RE ++RQ+ G++
Sbjct: 4 QRQAEVLSLRERGAELEERLQAARIALTSARERREFMEEEAEQARDYGDKLAQEMARLGRITRTLPPDESASLEKLRRLVATLTEIERQEQAALEQGKAREAALRTEIAEF-----TGETTGDGXXXXXXXXXXXXXXXXXXXDAAPATAGAPAGEGGGRAGKGREGGGFVLEKAVDDPLAAMAEPQEHQEEDKSGAGNIVG------AVPAAGVGTVSVLRTA---VVLGXXXXXXXXXXXPAERANHRKKPALEGKALFAEGLHRIEAAYEVAVAEREESAARLSRLRLAVARRQREEDAALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERLMLSLTRELLAKQARLLETIAGGVEEASTGGKGVREAYLRQIKGIV 372
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | similar to fidipidine |
| Ec32 ortholog | Ec-12_007170.1 |
| Exons | 4 |
| Model size | 2010 |
| Cds size | 1326 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5788.13379.1 >prot_H-paniculata_contig5788.13379.1 ID=prot_H-paniculata_contig5788.13379.1|Name=mRNA_H-paniculata_contig5788.13379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=442bp
MEQAVVSPTGDDQRSSDGHVGGGGTLLGTAEAAERESTRGREHQEDVRKL
RARGGELEERLAVARSGLASALERREFMQEEAEQAREYSCKLAQEISRLE
RIEHGLLPDQRSTLETLRRLIATSTALEHQEQSVLEEFRSREAALRAEID
DFRGGAATGATTGRAPSAESSGQEGAAVGQGKSQEASASGASSVRGGSED
PLAEPRLDEGNDDALQTSREDELLQQQQRQRQHQQHPAGAITPIATPSLE
GKALLAEGLHRIEAAHEAAAAEREMLATRLSRLRLAVARRQREEDATPGH
AELLQYLLRFEELGKHAREREKQLRGCQAERSTLARTREILANESRALEA
IASGVDDAAHKHKAARETFVRQLTGMIKGVEDSISNQARLLEASRDRRRA
AEETREAVAEEKKRFLKGARDLAEACMKYEGLKAHLSLMRR* back to topmRNA from alignment at H-paniculata_contig5788:6609..10426- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5788.13379.1 ID=mRNA_H-paniculata_contig5788.13379.1|Name=mRNA_H-paniculata_contig5788.13379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3818bp|location=Sequence derived from alignment at H-paniculata_contig5788:6609..10426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCACTGCAGGAGAGCACGTTAGCAGCACTGCACGATGTGGAGTATCGAA
ATATAGTGTCGAAATCGTCTCTGTACTTCGAAGCTTTCACAATCATCAAC
CCAGGAACAGAAAATCGTGCAGTTCTGTGCTGTATGAGGGGGTGCTAGTG
TTTTTCTGTCACGGAACACAATTGCGTCTAGCGAGCGCGGATCGGGCGCA
GGATGGAGCAAGCAGTCGTGAGCCCAACCGGCGATGATCAGCGCAGCTCA
GATGGCCACGTGCGTATAAGCATCCACTATTATATCCGTTGCTGGGTCTT
GGTAGAGGAACATGTGTTGACACATAGTATATACACAAACCAGTTCAGTG
AAGAATAGTGTACATGAGAAGCGATATGGAAGAGAGGAGAAAATAGTGAT
GGGCACTGCAACGCGAGGCATACTCTTGGGACAAGTAGTGCATGTATACT
GTAGTACAAGGTTGTCGGCTGCTCGAACTCCGATGTATCATGAATACGCG
GGGAAATAGTTGCTGCCACATGCTGCCACTTGTCAACACACCCAGTCATG
CGGCGCTTTTTATCAGGAGTACAGGGTGTATCTACCTCAGTACAAACAAC
ATTGAGCTCCACATATCGCAATACAGTAAAAAGCAAATCCATCCACATAA
TGAGTACAAAAGTGTGGCACAAGATAAAACCCAATGATTTATATTTTGTG
GGAAAAATGCGTGGGATTTTTTTTGGAGGTGTGATATCTACCGTAACCCC
CCGTAATTGAAGACCAATGAGATGCTGGTCATAGGCCGGGAGGGGCGGGG
TGATAACAGGGGCGGTAATAACACGCACACAACTTGGGTGTAGGATATAT
ATATATATATATATCATGCTGTCACTCTCGCCTATGCAAGTGGTGTGTGT
GACCACAGCAGCCTTAGTTCGAGGTATTATGTTGACTTGTCATTGTCCAC
TTAACACGGGGGGGGGGTATCGCATGCCATACTTCCATTTTAGAACAGGT
CAGATTCTTCCGTAACCCGAGTGATAAATGAGCTATTACCTCAGGAAACT
GCCAGAAAAGGTAAGAAAGAGGCGGGTAGTGTTATCTTTCGTAACTTCGG
TAAGAATCACACGCGATGTCACAATGACAGCAGTCCCCACAATAAAATAT
CTGCTGTGTTGATTAACTACGAAAAATAATTTTTTACTCCGCGTTACGCA
GCTCGAACGAAGTGCAAAAGTTGTACTTTGTCTCTGTTTTTTTTCAAAAT
TACCACAGGTGGGCGGTGGTGGTACGCTATTGGGAACGGCAGAGGCCGCT
GAAAGAGAAAGCACGCGAGGGCGGGAGCATCAAGAGGATGTACGGAAACT
TCGCGCACGTGGGGGCGAGCTAGAGGAACGGCTGGCAGTCGCACGGTCCG
GCCTAGCTTCGGCCCTTGAAAGACGGGAGTTTATGCAAGAGGAGGCAGAA
CAGGTGCGGTTGCAATGGTTGTTTTTGTTCCGACAGAGATCGATGGATAT
ATATATATATATATATATATGGGGATATATATGTGGACGGACCCGCCTCT
TCTAATAGGTTTGTTGTACAGTATTTTTTATGATGGGGTTTGGAAGTGGG
TACCAGTAATGTTACAAGCACAGTGGCTAGAGCACCTCCAGGTATCTGAC
ATCTACGTCAACGCGCGCTCTCTCGATAGCCGTAACCCATTAAATCCGTT
AAAAGTGACGTTCACCATCCCAATACCTGCCACTGTAATGGAGCATAAAA
ACGGGGGAGGGGGGGGGAAGAAAATCGCAACCTACCTCAATTCGACCATC
TTCTCTGCTCGCCTGGTGCTCATGCCCAGGCCCGAGAGTACAGCTGCAAG
CTTGCCCAGGAGATATCTCGTCTGGAGCGCATAGAGCACGGTCTGCTTCC
AGACCAAAGATCTACGCTCGAAACCCTGCGGCGCCTCATTGCAACGTCGA
CAGCGCTCGAGCATCAGGAGCAGTCCGTGCTGGAGGAATTTCGGTCGAGG
GAAGCCGCGCTCCGCGCAGAGATCGACGACTTCAGAGGCGGGGCAGCGAC
GGGGGCAACGACGGGGCGGGCACCATCAGCGGAGTCTAGTGGGCAAGAGG
GGGCAGCGGTCGGGCAAGGAAAGAGTCAGGAGGCCAGTGCCTCAGGCGCG
AGCTCTGTACGGGGTGGTTCAGAAGATCCCCTAGCAGAACCCCGCCTGGA
CGAGGGCAACGACGACGCACTACAAACAAGTCGAGAAGATGAATTGCTGC
AGCAACAGCAGCGGCAGCGGCAGCACCAACAACATCCCGCAGGAGCTATT
ACTCCCATCGCAACGCCCTCGCTGGAAGGGAAGGCCCTACTGGCGGAAGG
GCTGCACAGGATCGAAGCGGCCCACGAGGCGGCGGCTGCCGAGCGAGAGA
TGTTGGCGACGCGTCTGTCTAGGTTGAGGCTGGCGGTTGCCCGCCGGCAG
AGGGAGGAAGACGCCACCCCCGGGCATGCGGAGTTGCTGCAGTACTTGTT
GAGGTTCGAGGAATTGGGGAAGCACGCGCGCGAGCGTGAGAAGCAGCTGC
GGGGCTGCCAGGCGGAGCGGTCGACGCTCGCCCGGACGAGGGAGATACTG
GCGAATGAGTCAAGGGCGCTGGAGGCTATTGCAAGTGGGGTGGATGATGC
GGCCCATAAGCATAAGGCAGCGCGGGAGACTTTCGTGCGGCAGCTCACCG
GCATGATCAAGGTTTGTTTTTTCGAATGCTCGCTGTTATGGTAGACGATA
TGTCTATGATTTGATATCCATCCACCGCCTGGTCGATGGGGCGAGCAGAT
TTCGCGGTTTCCCAAAGCCCGGGTAGAGCTTCACCTATCGTTGTAGTTTT
TTAAATGATGTGTCGTGTTTTTGCTTGGTAGTCATGCATGTTTTTAGCTT
ATCATTTTTGTCAATTTGGCTTGAAAGGCGCTATTCGTTAGTACTGAACC
GAAGGGAATGGAGATGTAACCGGGTTAAAATTAGTGTTCATGGTTTGGGA
GAAAAAGTGGTTTGAACTAAACTTGTCATGTGGGCGGGAGTTCTCTTTCT
CGAGGCTTGGAGCACTATCATGCGCTCATGCCTCGGGGACAACGTGTGAT
TCCCCGCTGTTCTTGTTCTATTCATACGCACGGCTAACTGGTAGGGAGTT
GAAGACTCCATATCTAATCAGGCCCGGTTGCTGGAAGCCTCACGAGATAG
ACGACGAGCGGCGGAGGAGACGCGAGAGGCGGTGGCAGAAGAAAAGAAAC
GATTCCTGAAGGGGGCACGTGATTTGGCAGAGGCTTGCATGAAATACGAG
GGTCTGAAGGCACACCTGTCGTTGATGCGTCGATAGCACTACTGCACTAC
TACAGTGGTATGATGCTGTACAGCTTACCGTAGCAAGAATAGAGTTTGCG
GAGTAGAATGGGTTTGCCTCGATTTTCTTTACTGAAGCATTGTTGTTCAG
TATTGAAGAAATGGAGGTGTGATACACGTTGGCGCCGTCACCGGTACATC
GGGGTTGCATGTGCTGCACCTTCTGTGGTAGTACGGCAGCGCACGGTGCC
GAAGGTGTCGTGCATGCCTGCCACTTACAGAGTTCCCAAGCATTTCTTGT
TGAAATGTGTGACCCCAGCGAGTTGAGAGAATGCTGAATAGGTCGCATAT
TTTTATCAAAAATGGAGACATTCAAGACAAATAGCGTTCAATTCCGATTT
TGAAGTTCAGCTGGACACGGCACCCATGTTTTCATGAGCCATTAAGGACG
ACTTTCTGTGGTTTGTGGAATGGCACGTTCCCACTTCCTTCCAATCCAAT
CCAATACGTCAAAATCGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig5788:6609..10426- >mRNA_H-paniculata_contig5788.13379.1 ID=mRNA_H-paniculata_contig5788.13379.1|Name=mRNA_H-paniculata_contig5788.13379.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2652bp|location=Sequence derived from alignment at H-paniculata_contig5788:6609..10426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCAAGCAGTCGTGAGCCCAACCGGCGATGATCAGCGCAGCTCAGA
TGGCCACATGGAGCAAGCAGTCGTGAGCCCAACCGGCGATGATCAGCGCA
GCTCAGATGGCCACGTGGGCGGTGGTGGTACGCTATTGGGAACGGCAGAG
GCCGCTGAAAGAGAAAGCACGCGAGGGCGGGAGCATCAAGAGGATGTACG
GAAACTTCGCGCACGTGGGGGCGAGCTAGAGGAACGGCTGGCAGTCGCAC
GGTCCGGCCTAGCTTCGGCCCTTGAAAGACGGGAGTTTATGCAAGAGGAG
GCAGAACAGGTGGGCGGTGGTGGTACGCTATTGGGAACGGCAGAGGCCGC
TGAAAGAGAAAGCACGCGAGGGCGGGAGCATCAAGAGGATGTACGGAAAC
TTCGCGCACGTGGGGGCGAGCTAGAGGAACGGCTGGCAGTCGCACGGTCC
GGCCTAGCTTCGGCCCTTGAAAGACGGGAGTTTATGCAAGAGGAGGCAGA
ACAGGCCCGAGAGTACAGCTGCAAGCTTGCCCAGGAGATATCTCGTCTGG
AGCGCATAGAGCACGGTCTGCTTCCAGACCAAAGATCTACGCTCGAAACC
CTGCGGCGCCTCATTGCAACGTCGACAGCGCTCGAGCATCAGGAGCAGTC
CGTGCTGGAGGAATTTCGGTCGAGGGAAGCCGCGCTCCGCGCAGAGATCG
ACGACTTCAGAGGCGGGGCAGCGACGGGGGCAACGACGGGGCGGGCACCA
TCAGCGGAGTCTAGTGGGCAAGAGGGGGCAGCGGTCGGGCAAGGAAAGAG
TCAGGAGGCCAGTGCCTCAGGCGCGAGCTCTGTACGGGGTGGTTCAGAAG
ATCCCCTAGCAGAACCCCGCCTGGACGAGGGCAACGACGACGCACTACAA
ACAAGTCGAGAAGATGAATTGCTGCAGCAACAGCAGCGGCAGCGGCAGCA
CCAACAACATCCCGCAGGAGCTATTACTCCCATCGCAACGCCCTCGCTGG
AAGGGAAGGCCCTACTGGCGGAAGGGCTGCACAGGATCGAAGCGGCCCAC
GAGGCGGCGGCTGCCGAGCGAGAGATGTTGGCGACGCGTCTGTCTAGGTT
GAGGCTGGCGGTTGCCCGCCGGCAGAGGGAGGAAGACGCCACCCCCGGGC
ATGCGGAGTTGCTGCAGTACTTGTTGAGGTTCGAGGAATTGGGGAAGCAC
GCGCGCGAGCGTGAGAAGCAGCTGCGGGGCTGCCAGGCGGAGCGGTCGAC
GCTCGCCCGGACGAGGGAGATACTGGCGAATGAGTCAAGGGCGCTGGAGG
CTATTGCAAGTGGGGTGGATGATGCGGCCCATAAGCATAAGGCAGCGCGG
GAGACTTTCGTGCGGCAGCTCACCGGCATGATCAAGGCCCGAGAGTACAG
CTGCAAGCTTGCCCAGGAGATATCTCGTCTGGAGCGCATAGAGCACGGTC
TGCTTCCAGACCAAAGATCTACGCTCGAAACCCTGCGGCGCCTCATTGCA
ACGTCGACAGCGCTCGAGCATCAGGAGCAGTCCGTGCTGGAGGAATTTCG
GTCGAGGGAAGCCGCGCTCCGCGCAGAGATCGACGACTTCAGAGGCGGGG
CAGCGACGGGGGCAACGACGGGGCGGGCACCATCAGCGGAGTCTAGTGGG
CAAGAGGGGGCAGCGGTCGGGCAAGGAAAGAGTCAGGAGGCCAGTGCCTC
AGGCGCGAGCTCTGTACGGGGTGGTTCAGAAGATCCCCTAGCAGAACCCC
GCCTGGACGAGGGCAACGACGACGCACTACAAACAAGTCGAGAAGATGAA
TTGCTGCAGCAACAGCAGCGGCAGCGGCAGCACCAACAACATCCCGCAGG
AGCTATTACTCCCATCGCAACGCCCTCGCTGGAAGGGAAGGCCCTACTGG
CGGAAGGGCTGCACAGGATCGAAGCGGCCCACGAGGCGGCGGCTGCCGAG
CGAGAGATGTTGGCGACGCGTCTGTCTAGGTTGAGGCTGGCGGTTGCCCG
CCGGCAGAGGGAGGAAGACGCCACCCCCGGGCATGCGGAGTTGCTGCAGT
ACTTGTTGAGGTTCGAGGAATTGGGGAAGCACGCGCGCGAGCGTGAGAAG
CAGCTGCGGGGCTGCCAGGCGGAGCGGTCGACGCTCGCCCGGACGAGGGA
GATACTGGCGAATGAGTCAAGGGCGCTGGAGGCTATTGCAAGTGGGGTGG
ATGATGCGGCCCATAAGCATAAGGCAGCGCGGGAGACTTTCGTGCGGCAG
CTCACCGGCATGATCAAGGGAGTTGAAGACTCCATATCTAATCAGGCCCG
GTTGCTGGAAGCCTCACGAGATAGACGACGAGCGGCGGAGGAGACGCGAG
AGGCGGTGGCAGAAGAAAAGAAACGATTCCTGAAGGGGGCACGTGATTTG
GCAGAGGCTTGCATGAAATACGAGGGTCTGAAGGCACACCTGTCGTTGAT
GCGTCGATAGGGAGTTGAAGACTCCATATCTAATCAGGCCCGGTTGCTGG
AAGCCTCACGAGATAGACGACGAGCGGCGGAGGAGACGCGAGAGGCGGTG
GCAGAAGAAAAGAAACGATTCCTGAAGGGGGCACGTGATTTGGCAGAGGC
TTGCATGAAATACGAGGGTCTGAAGGCACACCTGTCGTTGATGCGTCGAT
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