mRNA_H-paniculata_contig57872.13377.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57872.13377.1
Unique NamemRNA_H-paniculata_contig57872.13377.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57872.13377.1 vs. uniprot
Match: D8LFS0_ECTSI (Defective in cullin neddylation protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS0_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.900e-16
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   13 LGYDNVKDLVVLVISWKMQAQEMCVYTRKEWREGMAKLGVSTTRQLRQK 159
            LG D  +DLVVL+ISWKM+A+EMCVY+R+EWR GM+K+GVS+TRQLRQK
Sbjct:  107 LGVDT-QDLVVLIISWKMEAEEMCVYSRQEWRRGMSKMGVSSTRQLRQK 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57872.13377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFS0_ECTSI4.900e-1673.47Defective in cullin neddylation protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57872contigH-paniculata_contig57872:229..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D8LFS0
KEGG koko:K17822
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.cullin family protein binding
EggNOG OGsKOG3077@1,KOG3077@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003780.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930627.3808825-CDS-H-paniculata_contig57872:228..3871622930627.3808825-CDS-H-paniculata_contig57872:228..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57872 229..387 +
1691481379.0735977-CDS-H-paniculata_contig57872:228..3871691481379.0735977-CDS-H-paniculata_contig57872:228..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57872 229..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57872.13377.1prot_H-paniculata_contig57872.13377.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57872 229..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57872.13377.1

>prot_H-paniculata_contig57872.13377.1 ID=prot_H-paniculata_contig57872.13377.1|Name=mRNA_H-paniculata_contig57872.13377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
LFFCLGYDNVKDLVVLVISWKMQAQEMCVYTRKEWREGMAKLGVSTTRQL
RQK
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mRNA from alignment at H-paniculata_contig57872:229..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57872.13377.1 ID=mRNA_H-paniculata_contig57872.13377.1|Name=mRNA_H-paniculata_contig57872.13377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig57872:229..387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTTTTTTGCCTGGGCTATGACAACGTGAAGGACCTAGTTGTACTGGT
AATTTCGTGGAAGATGCAGGCGCAGGAGATGTGCGTCTACACAAGAAAGG
AGTGGCGAGAGGGAATGGCGAAGCTCGGGGTATCGACAACGCGCCAACTC
AGACAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig57872:229..387+

>mRNA_H-paniculata_contig57872.13377.1 ID=mRNA_H-paniculata_contig57872.13377.1|Name=mRNA_H-paniculata_contig57872.13377.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig57872:229..387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTTTTTTGCCTGGGCTATGACAACGTGAAGGACCTAGTTGTACTGGT
AATTTCGTGGAAGATGCAGGCGCAGGAGATGTGCGTCTACACAAGAAAGG
AGTGGCGAGAGGGAATGGCGAAGCTCGGGGTATCGACAACGCGCCAACTC
AGACAAAAGTTGTTTTTTTGCCTGGGCTATGACAACGTGAAGGACCTAGT
TGTACTGGTAATTTCGTGGAAGATGCAGGCGCAGGAGATGTGCGTCTACA
CAAGAAAGGAGTGGCGAGAGGGAATGGCGAAGCTCGGGGTATCGACAACG
CGCCAACTCAGACAAAAG
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