prot_H-paniculata_contig5786.13376.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig5786.13376.1
Unique Name	prot_H-paniculata_contig5786.13376.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	126

Homology

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 6.630e-72
Identity = 117/124 (94.35%), Postives = 119/124 (95.97%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 124
            MSGKGKGGRG  KKS TRSAKAGLQFPVGR+GRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 2.270e-70
Identity = 116/123 (94.31%), Postives = 118/123 (95.93%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 123
            MSGKGKGGRG  KKS TRSAKAGLQFPVGR+GRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct:   46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 7.670e-67
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KKS ++S+KAGLQFPV RIGR+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 3.930e-66
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KKS ++S+KAGLQFPV RIGR+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 7.560e-66
Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KK  +RSAKAGLQFPVGRIGRF+K GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 201 bits (511), Expect = 9.720e-65
Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 123
            MSGKGKGGRG GKKS T SAKAGLQFPVGRIGR+L+ GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK  K
Sbjct:    1 MSGKGKGGRG-GKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO)

HSP 1 Score: 201 bits (511), Expect = 1.440e-64
Identity = 105/124 (84.68%), Postives = 115/124 (92.74%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 124
            MSG+GKG    GKK+V+RSAKAGLQFPVGR+ R+LK GKYA+R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK  KK
Sbjct:    1 MSGRGKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.520e-64
Identity = 102/118 (86.44%), Postives = 114/118 (96.61%), Query Frame = 0

Query:    3 GKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            GKGKGGRGD KK+V++SAKAGLQFPVGR+GRFLK G+YA RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK
Sbjct:    5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKK 121

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 199 bits (507), Expect = 3.960e-64
Identity = 104/120 (86.67%), Postives = 113/120 (94.17%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG+ KKS T SAKAGLQFPVGRIGR+L+ GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119

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BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA)

HSP 1 Score: 200 bits (508), Expect = 8.150e-64
Identity = 103/122 (84.43%), Postives = 114/122 (93.44%), Query Frame = 0

Query:    1 MSGKGKGGRGDGK--KSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG GK  KS TRSA+AGLQFPVGRI RFL+ G++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RI+PRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 122

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5786.13376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	6.630e-72	94.35	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	2.270e-70	94.31	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	7.670e-67	90.83	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D7FVQ5_ECTSI	3.930e-66	90.83	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
D8LLP0_ECTSI	7.560e-66	89.17	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A6U2JFS4_9STRA	9.720e-65	86.99	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A061QUG5_9CHLO	1.440e-64	84.68	Histone H2A n=4 Tax=core chlorophytes TaxID=269224...	[more]
A0A835ZLE9_9STRA	3.520e-64	86.44	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A448ZH28_9STRA	3.960e-64	86.67	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A7S0DT92_9EUKA	8.150e-64	84.43	Histone H2A n=1 Tax=Amorphochlora amoebiformis Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 100..118 score: 76.04 coord: 14..36 score: 69.65 coord: 43..58 score: 90.36 coord: 58..71 score: 90.54 coord: 72..86 score: 74.98
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..123 e-value: 6.4E-79 score: 278.2
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 1..125 e-value: 6.7E-62 score: 209.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 5..123
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 92..124 e-value: 1.4E-18 score: 66.3
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..89 e-value: 5.3E-15 score: 55.9
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..124
None	No IPR available	PANTHER	PTHR23430:SF251		coord: 8..124
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 22..28

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5786	contig	H-paniculata_contig5786:12282..12659 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5786.13376.1	mRNA_H-paniculata_contig5786.13376.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig5786 12282..12659 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig5786.13376.1 ID=prot_H-paniculata_contig5786.13376.1|Name=mRNA_H-paniculata_contig5786.13376.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKHGKYASRVGAGAPV
YLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGE
VTIASGGVLPNIHAVLLPKKVVKKV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR009072	Histone-fold
IPR032454	Histone_H2A_C
IPR007125	Histone_H2A/H2B/H3
IPR032458	Histone_H2A_CS