mRNA_H-paniculata_contig57815.13372.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57815.13372.1
Unique NamemRNA_H-paniculata_contig57815.13372.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57815.13372.1 vs. uniprot
Match: D7G5V1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V1_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 3.500e-7
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:   19 WSLGEPAVDSGVARAVLETGITDIGERHLEGVRLDAEGAIRAAVFAESSENTQRVDGGGSGRTGRGGCRGGIGGSDVDCSGIQEERGNRSHRRG 300
            WSLG+ AVD+    A    GI D GER LEGVR+D+EG + AAVFA            G G  GRGG          D SG ++ R ++SH +G
Sbjct:  762 WSLGDEAVDTAAVAAAARAGINDAGERRLEGVRVDSEGGVAAAVFA------------GKGVDGRGG---------GDASGRKQRR-SKSHEKG 833
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BLAST of mRNA_H-paniculata_contig57815.13372.1 vs. uniprot
Match: A0A6H5JI39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI39_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.760e-6
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:   19 WSLGEPAVDSGVARAVLETGITDIGERHLEGVRLDAEGAIRAAVFAESSENTQRVDGGGSGRTGRGGCRGGIGGSDVDCSGIQEERGNRSHRRG 300
            WSLG+ AVD+    A    GI D G+R LEGVR+++EG + AAVFA            G G  GRGG          D SG ++ R ++SH +G
Sbjct:  553 WSLGDEAVDTAAVAAAARAGINDAGQRRLEGVRVNSEGGVVAAVFA------------GKGVDGRGG---------GDASGRKQRR-SKSHEKG 624
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57815.13372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5V1_ECTSI3.500e-742.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI39_9PHAE6.760e-640.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57815contigH-paniculata_contig57815:303..1005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size703
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930627.1042094-CDS-H-paniculata_contig57815:302..6351622930627.1042094-CDS-H-paniculata_contig57815:302..635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57815 303..635 +
1691481378.9695513-CDS-H-paniculata_contig57815:302..6351691481378.9695513-CDS-H-paniculata_contig57815:302..635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57815 303..635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930627.1208127-UTR-H-paniculata_contig57815:635..10051622930627.1208127-UTR-H-paniculata_contig57815:635..1005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57815 636..1005 +
1691481378.9802933-UTR-H-paniculata_contig57815:635..10051691481378.9802933-UTR-H-paniculata_contig57815:635..1005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57815 636..1005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57815.13372.1prot_H-paniculata_contig57815.13372.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57815 303..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57815.13372.1

>prot_H-paniculata_contig57815.13372.1 ID=prot_H-paniculata_contig57815.13372.1|Name=mRNA_H-paniculata_contig57815.13372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
GVEEAGWSLGEPAVDSGVARAVLETGITDIGERHLEGVRLDAEGAIRAAV
FAESSENTQRVDGGGSGRTGRGGCRGGIGGSDVDCSGIQEERGNRSHRRG
RARKTSIKNP*
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mRNA from alignment at H-paniculata_contig57815:303..1005+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57815.13372.1 ID=mRNA_H-paniculata_contig57815.13372.1|Name=mRNA_H-paniculata_contig57815.13372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=703bp|location=Sequence derived from alignment at H-paniculata_contig57815:303..1005+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTAGAAGAAGCGGGATGGTCACTGGGCGAACCAGCGGTCGATTCAGG
GGTTGCGAGGGCGGTTTTGGAGACAGGGATAACCGATATCGGAGAGCGGC
ACTTAGAAGGGGTACGACTGGATGCAGAAGGGGCGATCAGGGCCGCTGTT
TTTGCCGAAAGCTCCGAAAATACACAAAGAGTGGATGGCGGCGGCAGCGG
TAGGACGGGGCGAGGGGGATGCCGTGGGGGTATTGGCGGGAGTGACGTGG
ACTGTTCAGGAATTCAGGAAGAAAGAGGGAATCGGTCGCATCGTCGAGGG
AGAGCAAGGAAAACGTCGATAAAAAACCCGTAGGCATACACTGTTGACAG
TATCAGAACGGTGTATGTACACTGTTAACCTCATCACAACGTCTTAACGC
GTTGTGTAAACACTGCCAACCTCACCACAGCGTGGACGTTGCAATATCCG
CAACAAAGTACTCTCTGGCCACGTGTGCGGTTACGTGCCTTAGCTCCAAA
AAGAGTCTCATTTTTTCTCTAGCGGTAACAAATAACCGAGATTGGCTGTC
GTTATGTCTCTCTGGATAAGGTTTAAGTCCCCGTCCACGGCAATTCGATA
TCTGTTCGGTATAATCGATAAATGACGGTTACGTTGTTAGTCAGTTACAT
GGAGTTTATATAAGTTTGGCATGTTCTGTTGAATCAGATCTATGGTCGTT
AGA
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Coding sequence (CDS) from alignment at H-paniculata_contig57815:303..1005+

>mRNA_H-paniculata_contig57815.13372.1 ID=mRNA_H-paniculata_contig57815.13372.1|Name=mRNA_H-paniculata_contig57815.13372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig57815:303..1005+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTAGAAGAAGCGGGATGGTCACTGGGCGAACCAGCGGTCGATTCAGG
GGTTGCGAGGGCGGTTTTGGAGACAGGGATAACCGATATCGGAGAGCGGC
ACTTAGAAGGGGTACGACTGGATGCAGAAGGGGCGATCAGGGCCGCTGTT
TTTGCCGAAAGCTCCGAAAATACACAAAGAGTGGATGGCGGCGGCAGCGG
TAGGACGGGGCGAGGGGGATGCCGTGGGGGTATTGGCGGGAGTGACGTGG
ACTGTTCAGGAATTCAGGAAGAAAGAGGGAATCGGTCGCATCGTCGAGGG
AGAGCAAGGAAAACGTCGATAAAAAACCCGTAGGGGGTAGAAGAAGCGGG
ATGGTCACTGGGCGAACCAGCGGTCGATTCAGGGGTTGCGAGGGCGGTTT
TGGAGACAGGGATAACCGATATCGGAGAGCGGCACTTAGAAGGGGTACGA
CTGGATGCAGAAGGGGCGATCAGGGCCGCTGTTTTTGCCGAAAGCTCCGA
AAATACACAAAGAGTGGATGGCGGCGGCAGCGGTAGGACGGGGCGAGGGG
GATGCCGTGGGGGTATTGGCGGGAGTGACGTGGACTGTTCAGGAATTCAG
GAAGAAAGAGGGAATCGGTCGCATCGTCGAGGGAGAGCAAGGAAAACGTC
GATAAAAAACCCGTAG
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