mRNA_H-paniculata_contig5780.13371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5780.13371.1
Unique NamemRNA_H-paniculata_contig5780.13371.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5JPU1_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU1_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.410e-34
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:    4 LVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            LVLDGHA H TFD I LAISL+I+LFQLPSH+ HITQPLDV TFG FK E+T VL  +P +IGG+ P+KSDM  VI +A++ SFT +    +F+GA +WP
Sbjct:   33 LVLDGHASHTTFDAITLAISLDIDLFQLPSHTSHITQPLDVGTFGTFKEELTRVLTAYPLKIGGRSPVKSDMAGVIAEAWRGSFTPANNMAAFKGAGMWP 132
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BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5L3C6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C6_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.070e-33
Identity = 61/100 (61.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    4 LVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            LVLDGHA H TFD I LAISL+I+LFQLPSH+ HITQPLDV TFG FK E+T VL  +P +IGG+ P+K DM  VI +A++  FT +   ++F+GA LWP
Sbjct:   52 LVLDGHASHTTFDAINLAISLDIDLFQLPSHTWHITQPLDVGTFGTFKKELTRVLTAYPPKIGGRSPVKRDMAGVIAEAWRGRFTPASNMVAFKGAGLWP 151
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BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5JT16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT16_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.500e-33
Identity = 61/101 (60.40%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 VLVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            VLVLDGHA HVT++V+KLA  LNI L+Q+PSHS H+ QPLDV +FG FK EIT VL  FP R GG++P KSDM+ ++ DA+  SF+  Q   SF GA LWP
Sbjct:   95 VLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVVSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWP 195
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BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5K717_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K717_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.100e-33
Identity = 60/101 (59.41%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    1 VLVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            VL LDGHA HVT++V+KLA  LNI L+Q+PSHS H+ QPLDV +FG FK EIT VL  FP R GG++P KSDM+ ++ DA+  SF+  Q   SF GA LWP
Sbjct:   99 VLALDGHASHVTYEVVKLARELNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFVGAGLWP 199
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BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5J798_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J798_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 4.820e-33
Identity = 61/100 (61.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    4 LVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            LVLDGHA H TFD I LAISL+I+LFQLPSH+ HITQPL+V TFG FK E+T VL  +P +IGG+ P+K DM  VI +A++ SFT +    +F+GA LWP
Sbjct:  164 LVLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLEVGTFGTFKKELTRVLTAYPLKIGGRSPVKRDMAGVIAEAWRRSFTPANNMAAFKGAGLWP 263
[Close]
BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5KSS7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSS7_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 9.060e-33
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    4 LVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            LVLDGHA H TFD I LAISL+I+LFQLPSH+ HITQPLDV  FG FK E+T VL  +P +IGG+ P+K DM  VI +A++ SFT +    +F+GA LWP
Sbjct:   52 LVLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLDVGIFGTFKKELTRVLTAYPLKIGGRSPVKRDMAGVIAEAWRGSFTPANNMAAFKGAGLWP 151
[Close]
BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5L259_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L259_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.390e-32
Identity = 61/100 (61.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    4 LVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            LVLDGHA H TFD I LAISL+I+LFQLPSH+ HITQPLDV TFG FK E+T VL  +P +IGG+ P+K DM  VI +A + SFT +    +F+G+ LWP
Sbjct:  167 LVLDGHASHTTFDAISLAISLDIDLFQLPSHTSHITQPLDVGTFGTFKKELTRVLTAYPLKIGGRSPVKRDMAGVIAEACRGSFTPANNMAAFKGSGLWP 266
[Close]
BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5KP55_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP55_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.910e-32
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VLVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            VLVLDGHA HV+ DVIKLAISLNI L QLPSH  HITQPLDVA FG FK E+  V+Q FP R GG +P K DM  +I  A+  SFT    K+SF GA LWP
Sbjct:  144 VLVLDGHASHVSLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGPSFTPEINKVSFAGAGLWP 244
[Close]
BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.990e-32
Identity = 67/101 (66.34%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VLVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            VLVLDGHA HVT DVIKLAISLNI L QLPSH  HITQPLDVA FG FK E+  V+Q FP R GG +P K DM  +I  A+ SSFT    K SF GA LWP
Sbjct:  293 VLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWP 393
[Close]
BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Match: A0A6H5JYT8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT8_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 9.120e-32
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 VLVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKTEITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLWP 303
            VLVLDGH  H TFD I LAIS +I+LFQLPSH+ HITQPL V TFG FK E+T VL  +P +IGG+ P+K DM  V+ + ++ SFT +    +F+GA LWP
Sbjct:   51 VLVLDGHPSHSTFDAISLAISPDIDLFQLPSHTSHITQPLGVGTFGTFKKELTRVLAAYPLKIGGRSPVKRDMAGVLAEVWRGSFTPANNMAAFKGAGLWP 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5780.13371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPU1_9PHAE4.410e-3462.00DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5L3C6_9PHAE1.070e-3361.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JT16_9PHAE1.500e-3360.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K717_9PHAE4.100e-3359.41DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J798_9PHAE4.820e-3361.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KSS7_9PHAE9.060e-3361.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L259_9PHAE1.390e-3261.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KP55_9PHAE2.910e-3264.36DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JYX7_9PHAE7.990e-3266.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT8_9PHAE9.120e-3257.43DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5780contigH-paniculata_contig5780:494..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.9e-21
Seed eggNOG ortholog2880.D8LN28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2CZS4@1,2SBGG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930627.0529587-CDS-H-paniculata_contig5780:493..7961622930627.0529587-CDS-H-paniculata_contig5780:493..796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5780 494..796 +
1691481378.957032-CDS-H-paniculata_contig5780:493..7961691481378.957032-CDS-H-paniculata_contig5780:493..796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5780 494..796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5780.13371.1prot_H-paniculata_contig5780.13371.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5780 494..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5780.13371.1

>prot_H-paniculata_contig5780.13371.1 ID=prot_H-paniculata_contig5780.13371.1|Name=mRNA_H-paniculata_contig5780.13371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
VLVLDGHAFHVTFDVIKLAISLNIELFQLPSHSPHITQPLDVATFGVFKT
EITSVLQPFPRRIGGKMPMKSDMVEVIRDAFQSSFTRSQVKLSFEGADLW
P
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mRNA from alignment at H-paniculata_contig5780:494..796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5780.13371.1 ID=mRNA_H-paniculata_contig5780.13371.1|Name=mRNA_H-paniculata_contig5780.13371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig5780:494..796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTCGTGCTCGATGGTCACGCATTTCACGTCACCTTCGACGTGATTAA
GTTGGCGATATCGCTCAACATTGAGCTGTTCCAGCTTCCGTCACACTCAC
CACACATCACCCAGCCTCTAGACGTCGCCACGTTCGGAGTCTTCAAGACG
GAAATTACGTCAGTACTACAGCCGTTCCCACGCCGTATCGGCGGCAAGAT
GCCGATGAAGTCAGACATGGTCGAGGTGATCAGAGATGCATTTCAGTCAA
GCTTCACGCGCTCACAGGTCAAGCTATCATTTGAGGGAGCCGACCTGTGG
CCT
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Coding sequence (CDS) from alignment at H-paniculata_contig5780:494..796+

>mRNA_H-paniculata_contig5780.13371.1 ID=mRNA_H-paniculata_contig5780.13371.1|Name=mRNA_H-paniculata_contig5780.13371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig5780:494..796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTCGTGCTCGATGGTCACGCATTTCACGTCACCTTCGACGTGATTAA
GTTGGCGATATCGCTCAACATTGAGCTGTTCCAGCTTCCGTCACACTCAC
CACACATCACCCAGCCTCTAGACGTCGCCACGTTCGGAGTCTTCAAGACG
GAAATTACGTCAGTACTACAGCCGTTCCCACGCCGTATCGGCGGCAAGAT
GCCGATGAAGTCAGACATGGTCGAGGTGATCAGAGATGCATTTCAGTCAA
GCTTCACGCGCTCACAGGTCAAGCTATCATTTGAGGGAGCCGACCTGTGG
CCTGTGCTCGTGCTCGATGGTCACGCATTTCACGTCACCTTCGACGTGAT
TAAGTTGGCGATATCGCTCAACATTGAGCTGTTCCAGCTTCCGTCACACT
CACCACACATCACCCAGCCTCTAGACGTCGCCACGTTCGGAGTCTTCAAG
ACGGAAATTACGTCAGTACTACAGCCGTTCCCACGCCGTATCGGCGGCAA
GATGCCGATGAAGTCAGACATGGTCGAGGTGATCAGAGATGCATTTCAGT
CAAGCTTCACGCGCTCACAGGTCAAGCTATCATTTGAGGGAGCCGACCTG
TGGCCT
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