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Homology
BLAST of mRNA_H-paniculata_contig578.13369.1 vs. uniprot
Match: D8LJ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ22_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 2.890e-13 Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 334 AEKLYSRDAVALCNATAVLDGEGIRSILRLASHPVNAPVAELLELLEKLVLRAAKSRAEYK 516
AE+ ++++ ALC+ T VLDGEG+RS LRLA+HPVNAP ELL LLE LVLRAA+SR +K
Sbjct: 75 AEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSRVMHK 135
BLAST of mRNA_H-paniculata_contig578.13369.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.710e-12 Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 334 AEKLYSRDAVALCNATAVLDGEGIRSILRLASHPVNAPVAELLELLEKLVLRAAKSRAEYK 516
AE+ ++++ ALC+ T VLDGEG+RS LRLA+HPVNAP ELL LLE LVLRAA+SR +K
Sbjct: 889 AEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSRVMHK 949
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-02_004430.1 |
| Exons | 5 |
| Model size | 1163 |
| Cds size | 1161 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig578.13369.1 >prot_H-paniculata_contig578.13369.1 ID=prot_H-paniculata_contig578.13369.1|Name=mRNA_H-paniculata_contig578.13369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=387bp
ARHNYREDSSGISKRYVSVTSCRPRVVRACGAPAPCRWRKKGSGCPGSGQ RRWWLRGKRRWRAKSLAGLHCYRLQLGSAERFWHLDRVWGRRGRARSIRG WAGGLPNRCVIAEKLYSRDAVALCNATAVLDGEGIRSILRLASHPVNAPV AELLELLEKLVLRAAKSRAEYKKNFPLSSSTAPANTNANTNTAPDAGLSA PAGSAGAPAKKLQQRGPSSIPANPGQNATTARPGASGGAGGDRTMSRYGS FSAGGGSGGAPAVAGGGGRQAAAAAAAAAAAASMLVVKNADVEMGVITNL FQLSFYKVRKNRANIMAIHNVMSSTANNRGNSIPDNMDTLDFDGGNTSRS RGSFRRGSSSNSSFSKTSVDGRGGGGGAAGGRGFGGG back to topmRNA from alignment at H-paniculata_contig578:7815..13361- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig578.13369.1 ID=mRNA_H-paniculata_contig578.13369.1|Name=mRNA_H-paniculata_contig578.13369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5547bp|location=Sequence derived from alignment at H-paniculata_contig578:7815..13361- (Halopteris paniculata Hal_grac_a_UBK monoicous) GCAAGGCATAACTATCGGGAGGATTCGAGCGGCATTTCTAAGAGATATGT
CTCCGGTAAGTGTTGTGGTTGTCGAAGCGGGCGTGGGCACACGTGCGAAA
AATGACGAGAGTATATAATATAAATATGTATACAATATATATATATATAT
ATTCTTTTAGTAGAATGTAAAAGAAAAAAAAAAAAGGCTGGAAAAATTAC
AGTTTGGCTCCTGCACTGTTGTAAGCTATTACGGAGGCACAATGTTAATG
GGACCATATCGTTGCTATTTCACCCTGTGTGTACCCGTTCTACTCGGTGT
ATCTCCATTATCGCGGGGTTAAATCGAAAACCGAATGGTGGATACATACC
GCAGGATCGAGACGATTTCCACACATACCGGTTCCGCATGCCGGTCCAGT
GGGACGAGTTGAGACATTATCTTCCCCATGATTGTTGCACTTGAATATAT
TGAAGAATGAACTGGATTTTATTTATTATAATATTCTTTCAGACTTTTGC
GCGATATAACCGGATTCAGCTAAGAGTATCTCCGCCATGACGGGGTTCGG
AAACCAAATGGGGGGTGTACACCGCATGATGAGACAATTTCACACATGTC
GGTTCCGCATGTTGGTTCGGTATTACGGGTTAAGACTTGGGTTTTTTCAG
TAGAGCAACAGCTCGATTCCATTAACAACGTGCCTCCGTATTAATCGCAG
TGTTTTTTTTGTTTTTTTTGGGCGATCACTCAAAAAAAAAAATATATATA
TATATATATATGCTTGGCGCGCGTTTTTCCTGTTCCGGCTTTTTCTGTTA
TGCTTCAAGGCGAAGACGTGTAGTTTCTTGGGATATTTGTTTTGTCCTTG
TTGAGTCAAGGTTTGATGATAAATGCCGTGATGCCAAGTTATCAAAATAT
GTATGAATTATTTTCGTGTTCGGCTTCGGACTTTTCGCTCTTGAGTGTTT
CTCTTCTCTGCCGAGTGTCCCACTGTTCTGTAGCTGTGTACTGTGGTCTC
CCTTGTGCATCGATATTCTTCGTGTGTATATTCAGTACTAAATTGATGTA
GAAATCATGAATATTTTAATCGACCGTTTATTATCCGTCTAAGGCGGTTA
TCTAGCCACACGTTCCCGTACGCCTACCTTGTTACGGCTTCGCCTTAGTC
TCTAGCCTTACGTTATGGGTCATCCTCCAAACTGGTTAGAATAACAACTT
TGGGTATAACCAGCTTCCATGGTGTGACGGGCGGTGTGTTGTAAGACCCG
GGAACGGATTCAGCGCTGTATAGCTGACTAGCGATTTCTAGCGATTCCTC
GTTGATGATTGATGCGGGTCGGGCCTGACTTCGGGCCTAATATGGAACGT
GGTGTTTGTACGGTTTAATTTGGATGATTTGTCGCTATATGTGGAACAGA
ACGGCAGAATATTATTTATTGATATAGAGAGATAGAGATAGAGATCTATA
TATATATATATACGTATTTGCTGCATTTTTTTGTTGCTATGACTGAGAAT
CTTGAATCTTGTACAACGTTCGATGTTTGGACTTAACAATGTTTTGGGAA
AGTCTTTCTAAAGCGTATAGATCAGTAGATGTCAGTAATTAACACCGTTT
CGTGAGGACGGCCTGCTTCAAGCAAGTACGTGTTCTTGCGATGTTCTGTT
TGTGTTTTGTACAATCGATGAACAGGGAATAATTGTTTTGTCGAAGTAAT
TTTTCACCTATTTTACCAGTGTGTCCTTTCCTTTCCGACTACTTGGTAGT
GTACTTTCGCCCCCTCGCCCTTACCCGACCGTCGTTTTCTTCTCTCCCTG
TGATGCAGTCATGTAGGATATACGGTCGAGTGTACTGTCGACGCAGCGGT
GCCACTCTAATTGAGGCTGGAGTTTGCTGTTAGCTCCCCAGCATATCTCG
AGTCTTTATCTTGCGCGATATTCTCTCAACATGATATATTGGTGAACGTA
CGGAAGCTCCTGTCAGCATGTCCTTGCGTGAAACAATCCCACATTTTTCA
GTTGTCTGCTCGCGCAGCTGTGATGACACAGATCACGCAGGCAATCGTTG
TTTCACGCTTGGCTTTGGTTTGTTTCGATTCCTGCCTCCATCGCTCTGGC
CCGGTTTCTCCGGTTACCCTTTCTTCGGCGTCATTCTGTTTGCTTTGCTT
TGCTTTGTCTTGCTTTGTCTTGCTTTGTCTTACTTTGTCTTGCTTTGTCT
TGCTTTGTCTTGCTTTGTCTTGCTTTGTCTTGCTTTGTCTTGCTTTGTCT
TACTTTGTCTTACTTTGTTTCGCTTCTTCCGCCCATCGCCTTGGCCGAAT
TGCCGCCGCCATCGTTACTACGGCGTCATCACGCTCGCGATGCGCTCCAC
AGTTACATCGTGCCGGCCTCGTGTGGTGCGAGCGTGCGGCGCCCCCGCTC
CTTGTCGCTGGAGAAAGAAAGGATCCGGATGCCCAGGGTCAGGGCAACGG
CGGTGGTGGCTACGGGGGAAGCGACGGTGGCGGGCGAAGTCTTTGGCAGG
ATTGCATTGTTATCGTCTGCAGCTTGGCTCTGCTGAACGATTCTGGCATC
TTGACCGGGTCTGGGGGAGGAGGGGTAGGGCAAGGTCCATCAGAGGCTGG
GCAGGCGGACTTCCAAATAGGTGCGTGATCGCGGAGAAACTGTATTGCTT
TGCGGGTCAGCAGGGGGAGGAGAGGGCTGAAAATGGTTTCTTTGTTCGCG
TTAGGCAAATCAGAACATACGAATATTGTTGCAGTATTTCAACACACGTC
ATCCGGGTGTTGAAATTATTTTATTTTTAATTCTGCAGATCATAGCAAAA
GACGCTTGTTACACGCAAGCTGAGAGAGAGACTCGACATGAAATGCCCCT
GTGTAGCTTTGGTTTGGCACGAACGTGCGGAAGTCTGGTGATTTCTTGGA
TAGAATATAATATATGTTGTACTGCAGATGATGAGTGCCACGAGCGGTTG
CACGTGCGCACGTGCAAGACTTGCGCTATCTGTGTACACCGTTAAATGGG
GTACGTAAGCCCGTGTATCTACGTGAATCAAGAACTGTGTGTGTGTGTGT
GTGTGTGTGTGTTTAACGGCGACTAGACAAGCCAAACTCTTGCAAATAAT
GCTCTTGTGCGGTTGACTTGCTCCCTGCTTGAAATTGTAGCTCCAAGAGT
CACGTTTCATACACCTCACAGCAAGGGAAGCATGTCGTGCGTCGTACCTG
AATGGTGTTCCTTCTTGCACCGTCCCCCTCCCCCCCCCCCGGCCCCCCGG
CCCCCCGCCCTCCTCGCGCACCATATCCGCCCACCTTTGATATGTTCCTC
ATTGAAGCTCGGGATGCGGTAGCTCTGTGCAACGCTACAGCTGTGCTCGA
CGGGGAGGGCATACGCTCTATATTGAGACTGGCGTCGCACCCCGTCAATG
CGCCTGTAGCGGAGCTCCTGGAGCTGCTGGAGAAGCTCGTTCTCAGGTGC
GTGTCAAACGTCCTTTATGTGCAGTGTTTCCCAGGCAGGCAAGACCAATC
TGCACACGGCTGTACTCGACGTATTGTGGTCCTGTGCAGGGGTTGTTATC
GTGTGGTCATTAGCCGTTTTCACTTCTCCTTGTGATTATATGACATGGTA
TAAAATGGTTGCGTGTCATGCGTGTTCATATTCCCCGACATTACGCTCCG
GAATAGTCGTATGCCTACTATCGCCAACGTCTTATGTCTATCTCGAGAAC
CGCGTCGTCTCATCTTATTGAAACGCCATATTCAACTTCCTGCATCCACC
CCCTCCTACCCCCATTATACTTGACTTCACAGGGCTGCGAAGAGTCGAGC
GGAATACAAGAAAAACTTCCCTCTGTCATCCTCCACGGCGCCTGCCAATA
CCAACGCCAATACCAACACCGCTCCCGATGCAGGATTATCAGCACCTGCC
GGCTCTGCCGGCGCGCCCGCTAAAAAATTGCAGCAACGAGGTCCATCCAG
CATCCCCGCAAACCCCGGACAAAATGCGACGACTGCTCGGCCAGGCGCTA
GTGGCGGTGCCGGCGGGGATCGCACCATGTCTAGATATGGTTCTTTTTCA
GCTGGTGGGGGTTCGGGGGGCGCTCCTGCGGTGGCGGGAGGGGGTGGAAG
GCAGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGAGCATGCTGG
TTGTCAAGAATGCGGATGTAGAAATGGGCGTCATTACCAATGTATGGTTC
GGGGTAGGGGGGCGGGAAATTTGTCGGGAGCACGGTTGACGGGTTTTGGG
ATTAGGTTGGAGAATCGAGAAATCACGAGAGGGTCGTTGACAGAGAGAAT
GAATGTACGTCCTACGAGAGGTGGTTACTTGCTGGGAGCGGCCTGCGATC
AGCATTTGTGTTATATCTTGTCTTTTGTATTGTGCTGGTTTGTTCAGTTT
GATTTTGGAAATACAAACCGAACAGTCGATATTTAATATTCGAATGAACG
GCGTGTGATGTGCGGTATGCATCTTCCCCTGGGTTACGCGCTTCGTTTTC
GGCAGCGTTCGCATCCGTATGGGCGGTATGTGTGTTGGACTTTTACCTTG
ATTCGAATAGCAGAACGCCGCTCTACCGCTTTGATCCATGTATTGATCCT
GTTCACATTACACATATGTACCCGTAAGACCTTGTACGGTACTTATACTC
CGTCCGCAGAGCAGAATATGCCCCCCATTGACGTGCCACATCTCCTACTT
GTACAAGGTTTTTGGTCTCATGTCTTCCACTTGTTACCACGATACTCGAC
TCCAAAGCACGGACAAAGCCGTCCCCGAAAAGAGTAGAGAATGTTCCACA
CCTTCGATCAAGTTCTACAATTTATTTTCTAGTAACAACTCCCATCATAG
CGCCTTGAGGCTTTAGACCAATCGTCATGCTTGAAAGCATGAAAATCTCT
AGAGAAGCGCTTGTACTAAAAAAAAAAACGCTGGACGACGAACGTGTGAA
TGAACGGTTTTTTTTTTATGCTGTCGATCCTTTTGAACGGAACTTGATAT
GCGCTAAGTATCTTGGTGCTGTCATAGTCATGTTCCAAAATCCGCGGTAG
CTTTCGTCAACCTTCATCCTTTGGAAGTTCGAAATGCTCTTAACAGATGG
CGCCAACGCTTCCGCACTTATTCGCGTCGCCGCCTCTTTTCTACGTATGT
ATTTCATTTGACCACCTCTGCTGTCAACTGGAACATGCGCGGAATCTCTG
GATCGTGACATTCGGGGGCAACAAAACGCCAACTGGATCATGATAAACAA
CGGCTGAACAATTAAATCAAAACAACCAAACAGTTGTTCCAGCTGTCTTT
TTACAAGGTTCGCAAAAACCGCGCCAACATCATGGCTATCCACAACGTTA
TGAGCTCCACCGCAAACAACCGCGGCAACAGCATCCCAGACAACATGGAC
ACCTTGGATTTTGATGGCGGCAATACCAGTCGAAGCAGAGGTAGCTTTAG
AAGAGGCAGCAGCAGCAACAGTAGCTTTTCCAAAACCAGCGTCGATGGGC
GTGGGGGCGGCGGTGGGGCTGCTGGAGGGCGCGGGTTTGGTGGTGGT back to topCoding sequence (CDS) from alignment at H-paniculata_contig578:7815..13361- >mRNA_H-paniculata_contig578.13369.1 ID=mRNA_H-paniculata_contig578.13369.1|Name=mRNA_H-paniculata_contig578.13369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2322bp|location=Sequence derived from alignment at H-paniculata_contig578:7815..13361- (Halopteris paniculata Hal_grac_a_UBK monoicous) GCAAGGCATAACTATCGGGAGGATTCGAGCGGCATTTCTAAGAGATATGT CTCCGGCAAGGCATAACTATCGGGAGGATTCGAGCGGCATTTCTAAGAGA TATGTCTCCGTTACATCGTGCCGGCCTCGTGTGGTGCGAGCGTGCGGCGC CCCCGCTCCTTGTCGCTGGAGAAAGAAAGGATCCGGATGCCCAGGGTCAG GGCAACGGCGGTGGTGGCTACGGGGGAAGCGACGGTGGCGGGCGAAGTCT TTGGCAGGATTGCATTGTTATCGTCTGCAGCTTGGCTCTGCTGAACGATT CTGGCATCTTGACCGGGTCTGGGGGAGGAGGGGTAGGGCAAGGTCCATCA GAGGCTGGGCAGGCGGACTTCCAAATAGGTGCGTGATCGCGGAGAAACTG TATTTTACATCGTGCCGGCCTCGTGTGGTGCGAGCGTGCGGCGCCCCCGC TCCTTGTCGCTGGAGAAAGAAAGGATCCGGATGCCCAGGGTCAGGGCAAC GGCGGTGGTGGCTACGGGGGAAGCGACGGTGGCGGGCGAAGTCTTTGGCA GGATTGCATTGTTATCGTCTGCAGCTTGGCTCTGCTGAACGATTCTGGCA TCTTGACCGGGTCTGGGGGAGGAGGGGTAGGGCAAGGTCCATCAGAGGCT GGGCAGGCGGACTTCCAAATAGGTGCGTGATCGCGGAGAAACTGTATTCT CGGGATGCGGTAGCTCTGTGCAACGCTACAGCTGTGCTCGACGGGGAGGG CATACGCTCTATATTGAGACTGGCGTCGCACCCCGTCAATGCGCCTGTAG CGGAGCTCCTGGAGCTGCTGGAGAAGCTCGTTCTCAGCTCGGGATGCGGT AGCTCTGTGCAACGCTACAGCTGTGCTCGACGGGGAGGGCATACGCTCTA TATTGAGACTGGCGTCGCACCCCGTCAATGCGCCTGTAGCGGAGCTCCTG GAGCTGCTGGAGAAGCTCGTTCTCAGGGCTGCGAAGAGTCGAGCGGAATA CAAGAAAAACTTCCCTCTGTCATCCTCCACGGCGCCTGCCAATACCAACG CCAATACCAACACCGCTCCCGATGCAGGATTATCAGCACCTGCCGGCTCT GCCGGCGCGCCCGCTAAAAAATTGCAGCAACGAGGTCCATCCAGCATCCC CGCAAACCCCGGACAAAATGCGACGACTGCTCGGCCAGGCGCTAGTGGCG GTGCCGGCGGGGATCGCACCATGTCTAGATATGGTTCTTTTTCAGCTGGT GGGGGTTCGGGGGGCGCTCCTGCGGTGGCGGGAGGGGGTGGAAGGCAGGC GGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGAGCATGCTGGTTGTCA AGAATGCGGATGTAGAAATGGGCGTCATTACCAATGGCTGCGAAGAGTCG AGCGGAATACAAGAAAAACTTCCCTCTGTCATCCTCCACGGCGCCTGCCA ATACCAACGCCAATACCAACACCGCTCCCGATGCAGGATTATCAGCACCT GCCGGCTCTGCCGGCGCGCCCGCTAAAAAATTGCAGCAACGAGGTCCATC CAGCATCCCCGCAAACCCCGGACAAAATGCGACGACTGCTCGGCCAGGCG CTAGTGGCGGTGCCGGCGGGGATCGCACCATGTCTAGATATGGTTCTTTT TCAGCTGGTGGGGGTTCGGGGGGCGCTCCTGCGGTGGCGGGAGGGGGTGG AAGGCAGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGCGAGCATGC TGGTTGTCAAGAATGCGGATGTAGAAATGGGCGTCATTACCAATTTGTTC CAGCTGTCTTTTTACAAGGTTCGCAAAAACCGCGCCAACATCATGGCTAT CCACAACGTTATGAGCTCCACCGCAAACAACCGCGGCAACAGCATCCCAG ACAACATGGACACCTTGGATTTTGATGGCGGCAATACCAGTCGAAGCAGA GGTAGCTTTAGAAGAGGCAGCAGCAGCAACAGTAGCTTTTCCAAAACCAG CGTCGATGGGCGTGGGGGCGGCGGTGGGGCTGCTGGAGGGCGCGGGTTTG GTGGTGGTTTGTTCCAGCTGTCTTTTTACAAGGTTCGCAAAAACCGCGCC AACATCATGGCTATCCACAACGTTATGAGCTCCACCGCAAACAACCGCGG CAACAGCATCCCAGACAACATGGACACCTTGGATTTTGATGGCGGCAATA CCAGTCGAAGCAGAGGTAGCTTTAGAAGAGGCAGCAGCAGCAACAGTAGC TTTTCCAAAACCAGCGTCGATGGGCGTGGGGGCGGCGGTGGGGCTGCTGG AGGGCGCGGGTTTGGTGGTGGT back to top
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