mRNA_H-paniculata_contig5777.13367.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5777.13367.1
Unique NamemRNA_H-paniculata_contig5777.13367.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5777.13367.1 vs. uniprot
Match: D7FKA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.080e-20
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 LFQDDLRHPDVQKALQHWTGHQRLPNDEADELMQDNYRVHAVFKKMAALQACCRAGGIGTPLAQVLSGTGLH 216
            L QDDLR+ DV++AL+HWTG  R+  D ADELM+DNYR+ +V  +MA LQ+ C+   IG PL+ VL+G GL+
Sbjct:   38 LLQDDLRNTDVKRALEHWTGQNRMSQDHADELMEDNYRIQSVCSRMAELQSLCKQASIGLPLSHVLAGKGLY 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5777.13367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKA4_ECTSI6.080e-2055.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5777contigH-paniculata_contig5777:9617..11275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003360.1
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930626.5077555-CDS-H-paniculata_contig5777:9616..98871622930626.5077555-CDS-H-paniculata_contig5777:9616..9887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5777 9617..9887 -
1691481378.6697555-CDS-H-paniculata_contig5777:9616..98871691481378.6697555-CDS-H-paniculata_contig5777:9616..9887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5777 9617..9887 -
1622930626.5238914-CDS-H-paniculata_contig5777:11162..112751622930626.5238914-CDS-H-paniculata_contig5777:11162..11275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5777 11163..11275 -
1691481378.6815782-CDS-H-paniculata_contig5777:11162..112751691481378.6815782-CDS-H-paniculata_contig5777:11162..11275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5777 11163..11275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5777.13367.1prot_H-paniculata_contig5777.13367.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5777 9617..11275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5777.13367.1

>prot_H-paniculata_contig5777.13367.1 ID=prot_H-paniculata_contig5777.13367.1|Name=mRNA_H-paniculata_contig5777.13367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
LFQDDLRHPDVQKALQHWTGHQRLPNDEADELMQDNYRVHAVFKKMAALQ
ACCRAGGIGTPLAQVLSGTGLHPANPITAQQQSPTNTSLRHAASLGANHN
TGKAGRDFFQSAESRPNRGQRRTSTGVR
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mRNA from alignment at H-paniculata_contig5777:9617..11275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5777.13367.1 ID=mRNA_H-paniculata_contig5777.13367.1|Name=mRNA_H-paniculata_contig5777.13367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1659bp|location=Sequence derived from alignment at H-paniculata_contig5777:9617..11275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTTCAGGACGACTTGCGGCATCCCGACGTTCAGAAAGCTCTCCAGCA
CTGGACAGGCCACCAGCGACTTCCTAACGATGAAGCTGACGAATTAATGC
AGGACAATTATCGGTGAGTCTTGGAATTTCCGAGTCCTAATGTGGAGACA
CCACGTCTCTCTCTCGGCTGCCCGACAGTTGTATACGTTTATTTCATTCG
TGACAAACTTGATTTTACCTGGCAGCGGTGCTGCATGTTTCCGGTATCTG
TATAAAAAGGGGTTCTTGTGTAAGGCCCAATAATATAAGTACTCCTTTCC
CTACGTTTGACATGGTTCGTCTGTGGTCTATTTGAGACGGTTTGGGACAC
GCCAGGGGTTAAGCGACAGTTGCTGGTCCTTGCAATCACCATTATACAAG
GTACATATATCCCGCGAAACTCGCGCCGATAGCACAGCCTCCCGTTGACT
CTGCCAAGGTACACATCGTGATCTAGGCTAGGTAACGAAAGCATCTCATG
AGCGGGAGATACCCCAGTTGAACGTTGCACCGCCCGGACAAATCGTTTGC
ACCAGAAATTGAAAGTATTCGCTTGAGTTTCAAAATAAGCGGACAGGTAG
AATACACTTCCCACCCCTGTTCATTCGATTTACGAGTATTATTGGTAGTC
GTGGATGGTGCGGTGGCACATAGAATACACAAGTTTATTCTGAAACTCAG
GCGAATATTTTCAGTCTTTGTGAAAACCATTTGCAATTATTCGTATTTTT
CCGGGGGGGGCGCAACGTTGCTCTTCAGGTGGCCCGTAGTAGGATGTTTA
GAACAAAGTATAATGTATGTACCATGTCTGATATGCAAGGCGCACGTTAA
GAGGGAGCTGACGGGGGGAAAACGTGCGAATAAATTCTTCACGTGATCGA
TTGCAGAAGGGTCTGCCGCCTCTGAGAGTTGCAGGGTGCTTGCTGTTTTA
CTTTTCCGTATCATACCTTCGATATCGAAAAGACATCTCGAACCCATCCA
TATTATGCTTTTCAAGACAAGAAAGGCGTGCAGTGTTGTACTCGAGAAGC
TAGTCACCTGCCTCTCCCTGTAGTTTCGATCAGCACTTCATTACCCCATA
TATTATTCTAATTTTGTTGACAAGTATACGCGGCTTATATTATAAGTTGT
GCGGCATATCCTCATAATTATTTCAATGTATCATGACAACTACAAGAGCG
GGTTGTCTTGCGAACGACAGTTCGTAGGTCAGGTGCTTATTTGTGTCAAG
TGCTCGCTTCTAGGTGATCCACACAGCTCCTGCCCCCCTGTCCCGTCCTT
GTCTCTTGCCGACTTGGCGTTGCATACATGCGTCGTACGATACGATTACC
TCCTCAAATCGGATCGCAACAACAACACCCGGACGCAGAGTCCACGCTGT
TTTCAAGAAGATGGCGGCACTTCAAGCTTGCTGTAGAGCGGGTGGAATCG
GCACGCCGTTGGCGCAAGTGCTCTCCGGCACGGGGCTCCACCCAGCCAAT
CCCATTACCGCGCAACAACAATCGCCAACAAACACCTCCCTCAGACACGC
CGCAAGTCTAGGTGCAAACCACAACACTGGAAAGGCCGGTCGTGATTTTT
TCCAGTCCGCGGAGTCGCGACCGAATCGAGGACAACGAAGAACGTCGACA
GGAGTCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5777:9617..11275-

>mRNA_H-paniculata_contig5777.13367.1 ID=mRNA_H-paniculata_contig5777.13367.1|Name=mRNA_H-paniculata_contig5777.13367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig5777:9617..11275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTTCAGGACGACTTGCGGCATCCCGACGTTCAGAAAGCTCTCCAGCA
CTGGACAGGCCACCAGCGACTTCCTAACGATGAAGCTGACGAATTAATGC
AGGACAATTATCGCTCTTTCAGGACGACTTGCGGCATCCCGACGTTCAGA
AAGCTCTCCAGCACTGGACAGGCCACCAGCGACTTCCTAACGATGAAGCT
GACGAATTAATGCAGGACAATTATCGAGTCCACGCTGTTTTCAAGAAGAT
GGCGGCACTTCAAGCTTGCTGTAGAGCGGGTGGAATCGGCACGCCGTTGG
CGCAAGTGCTCTCCGGCACGGGGCTCCACCCAGCCAATCCCATTACCGCG
CAACAACAATCGCCAACAAACACCTCCCTCAGACACGCCGCAAGTCTAGG
TGCAAACCACAACACTGGAAAGGCCGGTCGTGATTTTTTCCAGTCCGCGG
AGTCGCGACCGAATCGAGGACAACGAAGAACGTCGACAGGAGTCCGGAGT
CCACGCTGTTTTCAAGAAGATGGCGGCACTTCAAGCTTGCTGTAGAGCGG
GTGGAATCGGCACGCCGTTGGCGCAAGTGCTCTCCGGCACGGGGCTCCAC
CCAGCCAATCCCATTACCGCGCAACAACAATCGCCAACAAACACCTCCCT
CAGACACGCCGCAAGTCTAGGTGCAAACCACAACACTGGAAAGGCCGGTC
GTGATTTTTTCCAGTCCGCGGAGTCGCGACCGAATCGAGGACAACGAAGA
ACGTCGACAGGAGTCCGG
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