mRNA_H-paniculata_contig5777.13366.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5777.13366.1
Unique NamemRNA_H-paniculata_contig5777.13366.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5777.13366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5777contigH-paniculata_contig5777:8998..9402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5777.13366.1prot_H-paniculata_contig5777.13366.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5777 9029..9328 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930626.4249895-UTR-H-paniculata_contig5777:8997..90281622930626.4249895-UTR-H-paniculata_contig5777:8997..9028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5777 8998..9028 +
1691481378.6141114-UTR-H-paniculata_contig5777:8997..90281691481378.6141114-UTR-H-paniculata_contig5777:8997..9028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5777 8998..9028 +
1622930626.4584584-UTR-H-paniculata_contig5777:9328..94021622930626.4584584-UTR-H-paniculata_contig5777:9328..9402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5777 9329..9402 +
1691481378.65688-UTR-H-paniculata_contig5777:9328..94021691481378.65688-UTR-H-paniculata_contig5777:9328..9402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5777 9329..9402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930626.4403033-CDS-H-paniculata_contig5777:9028..93281622930626.4403033-CDS-H-paniculata_contig5777:9028..9328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5777 9029..9328 +
1691481378.6337361-CDS-H-paniculata_contig5777:9028..93281691481378.6337361-CDS-H-paniculata_contig5777:9028..9328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5777 9029..9328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5777.13366.1

>prot_H-paniculata_contig5777.13366.1 ID=prot_H-paniculata_contig5777.13366.1|Name=mRNA_H-paniculata_contig5777.13366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MFCRRAHRIHCRCNTVVVLPLQKYMYNSSGSSQPQHPPFTCNCPFSIHRS
MVGCVYVRERTHTTVGESVYQLQTPPQKFQCQKDRKQLPGTEQQPPCHS*
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mRNA from alignment at H-paniculata_contig5777:8998..9402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5777.13366.1 ID=mRNA_H-paniculata_contig5777.13366.1|Name=mRNA_H-paniculata_contig5777.13366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig5777:8998..9402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGAGCCTCGATCATTCATTTTTGGGTGATGTTTTGTCGGCGGGCTC
ATAGGATACATTGTAGATGCAACACGGTGGTAGTGCTACCCCTGCAAAAG
TATATGTATAATAGCAGTGGATCCTCGCAACCTCAACACCCACCCTTCAC
GTGCAACTGTCCATTTAGCATACATCGATCGATGGTTGGATGTGTCTACG
TGCGCGAGAGGACACACACTACTGTCGGCGAGAGCGTCTATCAACTCCAA
ACACCACCCCAGAAATTCCAATGCCAAAAAGACAGAAAACAACTTCCTGG
TACGGAACAGCAGCCACCATGCCATTCTTGACGGCAGCAGTTAAGCAGTG
TCTCCCTCCAATGATGATATATTTCTACAACTCGTCATCCCCACCGAATG
TTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5777:8998..9402+

>mRNA_H-paniculata_contig5777.13366.1 ID=mRNA_H-paniculata_contig5777.13366.1|Name=mRNA_H-paniculata_contig5777.13366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig5777:8998..9402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTGTCGGCGGGCTCATAGGATACATTGTAGATGCAACACGGTGGT
AGTGCTACCCCTGCAAAAGTATATGTATAATAGCAGTGGATCCTCGCAAC
CTCAACACCCACCCTTCACGTGCAACTGTCCATTTAGCATACATCGATCG
ATGGTTGGATGTGTCTACGTGCGCGAGAGGACACACACTACTGTCGGCGA
GAGCGTCTATCAACTCCAAACACCACCCCAGAAATTCCAATGCCAAAAAG
ACAGAAAACAACTTCCTGGTACGGAACAGCAGCCACCATGCCATTCTTGA
ATGTTTTGTCGGCGGGCTCATAGGATACATTGTAGATGCAACACGGTGGT
AGTGCTACCCCTGCAAAAGTATATGTATAATAGCAGTGGATCCTCGCAAC
CTCAACACCCACCCTTCACGTGCAACTGTCCATTTAGCATACATCGATCG
ATGGTTGGATGTGTCTACGTGCGCGAGAGGACACACACTACTGTCGGCGA
GAGCGTCTATCAACTCCAAACACCACCCCAGAAATTCCAATGCCAAAAAG
ACAGAAAACAACTTCCTGGTACGGAACAGCAGCCACCATGCCATTCTTGA
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