prot_H-paniculata_contig57742.13360.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig57742.13360.1
Unique Nameprot_H-paniculata_contig57742.13360.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length65
Homology
BLAST of mRNA_H-paniculata_contig57742.13360.1 vs. uniprot
Match: A0A8F0F7F5_9PHAE (DNA-directed RNA polymerase n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7F5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.530e-24
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 0
Query:    1 EIETLSYLEVENTKKGTYIQLRPITRYEITKENSLNYFKQDSFRDGSLKIDDFTLNIESGELVRR 65
            +IETLSYLEV N KKGTYIQ+RPITRYEITKENSL Y + DSF +G+LKI+DF +N+ESGELVRR
Sbjct:  718 KIETLSYLEVGNHKKGTYIQVRPITRYEITKENSLQYLQHDSFIEGNLKIEDFNINVESGELVRR 782          
BLAST of mRNA_H-paniculata_contig57742.13360.1 vs. uniprot
Match: A0A8E6D2G6_9PHAE (DNA-directed RNA polymerase subunit beta'' n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2G6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.220e-11
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 0
Query:    1 EIETLSYLEVEN-TKKGTYIQLRPITRYEITKENSLNYFKQDSFRDGSLKIDDFTLNIESG 60
            EI+ LSYLE+E+ TK+G YI +RPITRYE+T++NS  + +++ F D  LK+ +F +N  SG
Sbjct:  716 EIKKLSYLEIESITKRGIYIYVRPITRYEVTRDNSRKFLQRNYFGDIKLKVGNFVMNATSG 776          
BLAST of mRNA_H-paniculata_contig57742.13360.1 vs. uniprot
Match: A0A344PFA2_9PHAE (DNA-directed RNA polymerase n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFA2_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.590e-8
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 EIETLSYLEVENTKKGTYIQLRPITRYEITKENSLNYFKQDSFRDGSLKIDDFTLNIESGELV 63
            EI  LSY+E+E+    TY+ +RPITRYE T E  L     +SF   +L ++DF + I SG+ +
Sbjct:  721 EIYVLSYIELESVHGETYLSIRPITRYEFTNEQPLQILNSNSFAPLNLIVEDFRIQILSGQQI 783          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57742.13360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8F0F7F5_9PHAE1.530e-2476.92DNA-directed RNA polymerase n=1 Tax=Protohalopteri... [more]
A0A8E6D2G6_9PHAE7.220e-1150.82DNA-directed RNA polymerase subunit beta'' n=1 Tax... [more]
A0A344PFA2_9PHAE9.590e-842.86DNA-directed RNA polymerase n=5 Tax=Scytosiphonace... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57742contigH-paniculata_contig57742:349..543 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57742.13360.1mRNA_H-paniculata_contig57742.13360.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig57742 349..543 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig57742.13360.1 ID=prot_H-paniculata_contig57742.13360.1|Name=mRNA_H-paniculata_contig57742.13360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
EIETLSYLEVENTKKGTYIQLRPITRYEITKENSLNYFKQDSFRDGSLKI
DDFTLNIESGELVRR
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