mRNA_H-paniculata_contig57742.13360.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57742.13360.1
Unique NamemRNA_H-paniculata_contig57742.13360.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57742.13360.1 vs. uniprot
Match: A0A8F0F7F5_9PHAE (DNA-directed RNA polymerase n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7F5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.530e-24
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 EIETLSYLEVENTKKGTYIQLRPITRYEITKENSLNYFKQDSFRDGSLKIDDFTLNIESGELVRR 195
            +IETLSYLEV N KKGTYIQ+RPITRYEITKENSL Y + DSF +G+LKI+DF +N+ESGELVRR
Sbjct:  718 KIETLSYLEVGNHKKGTYIQVRPITRYEITKENSLQYLQHDSFIEGNLKIEDFNINVESGELVRR 782
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BLAST of mRNA_H-paniculata_contig57742.13360.1 vs. uniprot
Match: A0A8E6D2G6_9PHAE (DNA-directed RNA polymerase subunit beta'' n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2G6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.220e-11
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 EIETLSYLEVEN-TKKGTYIQLRPITRYEITKENSLNYFKQDSFRDGSLKIDDFTLNIESG 180
            EI+ LSYLE+E+ TK+G YI +RPITRYE+T++NS  + +++ F D  LK+ +F +N  SG
Sbjct:  716 EIKKLSYLEIESITKRGIYIYVRPITRYEVTRDNSRKFLQRNYFGDIKLKVGNFVMNATSG 776
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57742.13360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8F0F7F5_9PHAE1.530e-2476.92DNA-directed RNA polymerase n=1 Tax=Protohalopteri... [more]
A0A8E6D2G6_9PHAE7.220e-1150.82DNA-directed RNA polymerase subunit beta'' n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57742contigH-paniculata_contig57742:349..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size196
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930625.9450376-CDS-H-paniculata_contig57742:348..5431622930625.9450376-CDS-H-paniculata_contig57742:348..543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57742 349..543 +
1691481378.3434594-CDS-H-paniculata_contig57742:348..5431691481378.3434594-CDS-H-paniculata_contig57742:348..543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57742 349..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57742.13360.1prot_H-paniculata_contig57742.13360.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57742 349..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57742.13360.1

>prot_H-paniculata_contig57742.13360.1 ID=prot_H-paniculata_contig57742.13360.1|Name=mRNA_H-paniculata_contig57742.13360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
EIETLSYLEVENTKKGTYIQLRPITRYEITKENSLNYFKQDSFRDGSLKI
DDFTLNIESGELVRR
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mRNA from alignment at H-paniculata_contig57742:349..543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57742.13360.1 ID=mRNA_H-paniculata_contig57742.13360.1|Name=mRNA_H-paniculata_contig57742.13360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig57742:349..543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATTGAAACATTAAGTTATTTAGAAGTAGAGAATACTAAAAAAGGAAC
TTATATTCAATTACGACCTATAACTCGTTATGAAATAACGAAAGAAAATT
CTCTTAATTATTTTAAACAGGATTCTTTTCGAGATGGTAGCTTAAAAATT
GATGATTTTACTCTCAACATTGAGTCAGGTGAACTAGTAAGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig57742:349..543+

>mRNA_H-paniculata_contig57742.13360.1 ID=mRNA_H-paniculata_contig57742.13360.1|Name=mRNA_H-paniculata_contig57742.13360.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig57742:349..543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATTGAAACATTAAGTTATTTAGAAGTAGAGAATACTAAAAAAGGAAC
TTATATTCAATTACGACCTATAACTCGTTATGAAATAACGAAAGAAAATT
CTCTTAATTATTTTAAACAGGATTCTTTTCGAGATGGTAGCTTAAAAATT
GATGATTTTACTCTCAACATTGAGTCAGGTGAACTAGTAAGAAGGGAAAT
TGAAACATTAAGTTATTTAGAAGTAGAGAATACTAAAAAAGGAACTTATA
TTCAATTACGACCTATAACTCGTTATGAAATAACGAAAGAAAATTCTCTT
AATTATTTTAAACAGGATTCTTTTCGAGATGGTAGCTTAAAAATTGATGA
TTTTACTCTCAACATTGAGTCAGGTGAACTAGTAAGAAGG
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