mRNA_H-paniculata_contig5774.13359.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5774.13359.1
Unique NamemRNA_H-paniculata_contig5774.13359.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A662XQ59_9STRA (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A662XQ59_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.240e-49
Identity = 87/98 (88.78%), Postives = 92/98 (93.88%), Query Frame = 1 
Query:    1 QDGSGSIDFEEFLNMMTAKM---SDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT 285
            +DGSGSIDFEEFL+MMTAKM   SDKDSREDI KVFNLFDDDQ+G I+LRNLKRVAKELGETM+DAELLEMIERAD DQDGEINAEEFYAIMTKKTFT
Sbjct:   72 KDGSGSIDFEEFLDMMTAKMVGASDKDSREDIQKVFNLFDDDQSGKISLRNLKRVAKELGETMTDAELLEMIERADADQDGEINAEEFYAIMTKKTFT 169
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A5A8CTE5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CTE5_CAFRO)

HSP 1 Score: 157 bits (398), Expect = 1.890e-47
Identity = 81/95 (85.26%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 QDGSGSIDFEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT 285
            +DGSG+IDF+EFL+MMTAKMSDKD+REDI KVFNLFDDD +G I+LRNLKRVAKELGETM+DAEL+EMIERADTDQDGEI+AEEFYAIMTKKTF+
Sbjct:   72 KDGSGAIDFDEFLDMMTAKMSDKDTREDIVKVFNLFDDDGSGRISLRNLKRVAKELGETMTDAELMEMIERADTDQDGEIDAEEFYAIMTKKTFS 166
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: F0WRL3_9STRA (Calciumdependent protein 4 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WRL3_9STRA)

HSP 1 Score: 156 bits (395), Expect = 5.910e-47
Identity = 81/95 (85.26%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 QDGSGSIDFEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT 285
            +DGSGSIDF+EFL+MMTAKMSDK++REDI KVF LFDDDQTG I+LRNLKRVA+ELGETMSDAELLEMIERADTDQDGEI  +EFYAIMT+KTFT
Sbjct:   75 KDGSGSIDFDEFLDMMTAKMSDKNTREDIQKVFALFDDDQTGKISLRNLKRVARELGETMSDAELLEMIERADTDQDGEIKPDEFYAIMTRKTFT 169
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A485KUJ5_9STRA (Aste57867_11335 protein n=36 Tax=Stramenopiles TaxID=33634 RepID=A0A485KUJ5_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.700e-45
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:   25 FEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT 285
            FEEFL+MMTAKMSDKDSR+DI KVFNLFDDDQTG I+LRNLKRVAKELGETMSDAELLEMIERAD DQDGEIN EEFYAIMTKKTFT
Sbjct:   82 FEEFLDMMTAKMSDKDSRDDIQKVFNLFDDDQTGKISLRNLKRVAKELGETMSDAELLEMIERADGDQDGEINPEEFYAIMTKKTFT 168
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A7S3K4A4_9STRA (Hypothetical protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S3K4A4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.200e-44
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:   22 DFEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTF 282
            DFEEFL+MMTAKMSDKD+REDI KVFNLFDDDQ+G ITLRNLKRVAKELGETMSDAEL+EMIERADTD DG+IN +EFYAIMTKKTF
Sbjct:   81 DFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQSGFITLRNLKRVAKELGETMSDAELMEMIERADTDNDGQINPDEFYAIMTKKTF 167
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A836CPT7_9STRA (Calcium-dependent protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 7.100e-44
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 QDGSGSIDFEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTF 282
            +D SG+IDFEEFL+MMTAKMSDKD+REDI KVFNLFDDD TG I+L+NLKRVAKELGE M+DAELLEMIERAD D D EIN +EFYAIMTKKTF
Sbjct:   78 KDSSGAIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDHTGKISLKNLKRVAKELGENMTDAELLEMIERADADGDSEINPDEFYAIMTKKTF 171
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A7S0C216_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C216_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.250e-43
Identity = 72/94 (76.60%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 QDGSGSIDFEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTF 282
            +DG G IDF+EFL++MTA+MSDKDS+EDI KVFNLFDDD++G ITL NLKRV+KELGETMS+AELLEMIERAD+D+DG+I+ E+FY+IMTKKTF
Sbjct:   22 KDGKGEIDFDEFLDLMTARMSDKDSKEDIQKVFNLFDDDKSGFITLSNLKRVSKELGETMSEAELLEMIERADSDEDGQIHFEDFYSIMTKKTF 115
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A7S2UVW5_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2UVW5_9STRA)

HSP 1 Score: 146 bits (369), Expect = 4.550e-43
Identity = 75/87 (86.21%), Postives = 83/87 (95.40%), Query Frame = 1 
Query:   25 FEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT 285
            FEEFL+MMTAKMSDKD++EDI KVFNLFDDDQTGHI++RNLKRVAKELGETMS+AELLEMIERADTD DG I+ +EFYAIMTKKTFT
Sbjct:   78 FEEFLDMMTAKMSDKDTKEDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPDEFYAIMTKKTFT 164
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BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A6U3SFL6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3SFL6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.110e-42
Identity = 73/95 (76.84%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 QDGSGSIDFEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT 285
            +DGSG IDF+EFL+MMTAKMSDKD++EDI KVF L+DDD TG I+LRN+KRVAKELGETM D +L+EMIERADTD DGEI  ++FYAIMTKKTFT
Sbjct:   98 EDGSGMIDFDEFLDMMTAKMSDKDTKEDIAKVFQLYDDDNTGKISLRNMKRVAKELGETMGDKDLMEMIERADTDNDGEITLDDFYAIMTKKTFT 192
[Close]
BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Match: A0A1R2C2Y3_9CILI (Uncharacterized protein n=8 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C2Y3_9CILI)

HSP 1 Score: 143 bits (361), Expect = 1.070e-41
Identity = 69/94 (73.40%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 QDGSGSIDFEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLKRVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTF 282
            +DGSG+IDF+EFL+MMTA+MSDKD++EDINKVF LFDDD+TG+IT++NL+RVAKELGETM+D EL+EMIERAD+D DG+++ E+FY IMTKK F
Sbjct:   82 KDGSGAIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYITIKNLRRVAKELGETMTDEELMEMIERADSDGDGQVSTEDFYNIMTKKAF 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5774.13359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A662XQ59_9STRA6.240e-4988.78Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
A0A5A8CTE5_CAFRO1.890e-4785.26Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
F0WRL3_9STRA5.910e-4785.26Calciumdependent protein 4 putative n=2 Tax=Albugo... [more]
A0A485KUJ5_9STRA2.700e-4591.95Aste57867_11335 protein n=36 Tax=Stramenopiles Tax... [more]
A0A7S3K4A4_9STRA2.200e-4488.51Hypothetical protein n=2 Tax=Pelagomonadales TaxID... [more]
A0A836CPT7_9STRA7.100e-4481.91Calcium-dependent protein 4 n=1 Tax=Tribonema minu... [more]
A0A7S0C216_9STRA4.250e-4376.60Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2UVW5_9STRA4.550e-4386.21Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A6U3SFL6_9STRA2.110e-4276.84Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1R2C2Y3_9CILI1.070e-4173.40Uncharacterized protein n=8 Tax=Stentor coeruleus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5774contigH-paniculata_contig5774:12710..13393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue3e-39
Seed eggNOG ortholog44056.XP_009036937.1
Preferred nameCEN2
KEGG koko:K16465,ko:K16466
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007346,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031974,GO:0031981,GO:0032465,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0046483,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097711,GO:0098534,GO:0120031,GO:0120036,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0028@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930625.9017708-CDS-H-paniculata_contig5774:12709..128131622930625.9017708-CDS-H-paniculata_contig5774:12709..12813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5774 12710..12813 -
1691481378.314975-CDS-H-paniculata_contig5774:12709..128131691481378.314975-CDS-H-paniculata_contig5774:12709..12813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5774 12710..12813 -
1622930625.912949-CDS-H-paniculata_contig5774:13209..133931622930625.912949-CDS-H-paniculata_contig5774:13209..13393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5774 13210..13393 -
1691481378.330019-CDS-H-paniculata_contig5774:13209..133931691481378.330019-CDS-H-paniculata_contig5774:13209..13393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5774 13210..13393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5774.13359.1prot_H-paniculata_contig5774.13359.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5774 12710..13393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5774.13359.1

>prot_H-paniculata_contig5774.13359.1 ID=prot_H-paniculata_contig5774.13359.1|Name=mRNA_H-paniculata_contig5774.13359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
QDGSGSIDFEEFLNMMTAKMSDKDSREDINKVFNLFDDDQTGHITLRNLK
RVAKELGETMSDAELLEMIERADTDQDGEINAEEFYAIMTKKTFT*
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mRNA from alignment at H-paniculata_contig5774:12710..13393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5774.13359.1 ID=mRNA_H-paniculata_contig5774.13359.1|Name=mRNA_H-paniculata_contig5774.13359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=684bp|location=Sequence derived from alignment at H-paniculata_contig5774:12710..13393- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGGATCCGGTTCAATCGATTTCGAGGAATTTCTGAACATGATGAC
TGCCAAGATGAGCGACAAAGACTCTCGGGAAGATATCAATAAGGTCTTCA
ATCTCTTCGATGATGACCAGACTGGCCATATCACGCTCAGGAATCTCAAG
CGCGTCGCGAAAGAGTTAGGGGAGACGATGTCAGGTGAGCGGATGTACCC
CAAGTCGAGCAGCACTTTCACAAGATATTGATGTTGTGATTATGCCTCGG
TGGTATTCCGAAAAAATGTCTCACCAAGTGGTCTACCTCATCCGAACAAT
ATCAACGGTGTGTTCGCCCTGGGTAACGATTTGCCCAGTGGCATGTAGTC
TATAATTGCTTACCGACTCCCTTGCATTTTGGGTGATTCGTAACAGTACG
TGGGCATGAAGACGGAAGATAAGCTGATTTCTGGTGAACAAAAAAATGTA
GATATCAGCATATCCAATCCCACCGTTTTCAATCCATCCACATCCCATTC
TAACGCTTTGTCTTTTCCCCATTATCCTGCCGCAACCGTCACCTAACGCG
AACCGTTCTCATCCCAATCCCCGGTTTCAGACGCAGAATTACTGGAAATG
ATCGAGCGAGCAGACACAGACCAGGACGGAGAGATCAACGCTGAAGAGTT
TTACGCCATTATGACCAAGAAAACCTTCACTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5774:12710..13393-

>mRNA_H-paniculata_contig5774.13359.1 ID=mRNA_H-paniculata_contig5774.13359.1|Name=mRNA_H-paniculata_contig5774.13359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig5774:12710..13393- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACGGATCCGGTTCAATCGATTTCGAGGAATTTCTGAACATGATGAC
TGCCAAGATGAGCGACAAAGACTCTCGGGAAGATATCAATAAGGTCTTCA
ATCTCTTCGATGATGACCAGACTGGCCATATCACGCTCAGGAATCTCAAG
CGCGTCGCGAAAGAGTTAGGGGAGACGATGTCAGCAGGACGGATCCGGTT
CAATCGATTTCGAGGAATTTCTGAACATGATGACTGCCAAGATGAGCGAC
AAAGACTCTCGGGAAGATATCAATAAGGTCTTCAATCTCTTCGATGATGA
CCAGACTGGCCATATCACGCTCAGGAATCTCAAGCGCGTCGCGAAAGAGT
TAGGGGAGACGATGTCAGACGCAGAATTACTGGAAATGATCGAGCGAGCA
GACACAGACCAGGACGGAGAGATCAACGCTGAAGAGTTTTACGCCATTAT
GACCAAGAAAACCTTCACTTGAACGCAGAATTACTGGAAATGATCGAGCG
AGCAGACACAGACCAGGACGGAGAGATCAACGCTGAAGAGTTTTACGCCA
TTATGACCAAGAAAACCTTCACTTGA
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