mRNA_H-paniculata_contig5773.13357.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: D7FQT7_ECTSI (RNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQT7_ECTSI) HSP 1 Score: 401 bits (1031), Expect = 1.110e-132 Identity = 301/440 (68.41%), Postives = 322/440 (73.18%), Query Frame = 1
Query: 202 KPKELSSEEQQKADVDGKIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTKIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRDGPRPGGFNGGGG----GYNXXXXXXXXXXXXXXXYGXXQQGWTQQGYGXXXXXXXXXXXXNRXXXXXXXXXXXXYGGQQXXXXXXXXXXXXXXXXXXXXXDQSXXXXXXXXXXXXXQTAQTSTSRQGSQSTATGXXXXXXXXXXXXXQTXXXXXXXXXXXXXXXXXXXAAATGGYGTAYGGTETAGNGGYGASTGATGXXXXXXXXXXXXXXYRGNAATSGRQDRSYRPY 1509
K KELS EEQQKADV+GKIFLGGLTWQTT+DMLK HFGKWG LNDVILMRNK+TGEPRGFGFVQF E+++ADAALKEEHVIDGRTIDVKRAVPRDRAP PRA ADR S +QVGGRHGGMNDAPL KIFVGGLDQEVNDADFR YFAKFGKVEDAVVMYDKKTGRSRGFGFITYD+PD+VRKVM+GGTHELKGK+VEVK A+PRDGPR FNGGGG XXXXXXXX XXXXXX XXQQGW+QQG XXXXXXXX XX Y QQ XXXXXXX DQS XXXXXXXXXXQ A T T RQ SQ+ +TG QT XXXXXXXXXXXXXXXX YGT+Y GT+ +G+GGYG +TGA YRG A T GRQ+RSYRPY
Sbjct: 45 KAKELSHEEQQKADVEGKIFLGGLTWQTTEDMLKTHFGKWGALNDVILMRNKITGEPRGFGFVQFQESTSADAALKEEHVIDGRTIDVKRAVPRDRAPLPRAAADRNSANARGGSQVGGRHGGMNDAPLTNKIFVGGLDQEVNDADFRGYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDSPDIVRKVMSGGTHELKGKSVEVKTAAPRDGPRQ--FNGGGGFXXXXXXXXXXXXXXYXXXXXXXXXXQQGWSQQGXXXXXXXXXXQQXXG-----------GGYNQQQQQGGYGXXXXXXXGQQ-----DQSYASXXXXXXXXXXQGAAT-TPRQSSQTASTGYNQGTTAQQGYGAQTGYSXXXXXXXXXXXXXXXXXXXX--YGTSYAGTDASGSGGYG-NTGAATGYGTAGVDQGGYGAYRGGATTQGRQERSYRPY 462
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: A0A7S3UWI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI8_HETAK) HSP 1 Score: 192 bits (489), Expect = 5.550e-55 Identity = 101/207 (48.79%), Postives = 135/207 (65.22%), Query Frame = 1
Query: 214 LSSEEQQKA-DVDGKIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTKIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRD 831
+S E +++ DV GK+FLGG++WQTT+D LK +F K+G L D +M++K TG+PRGFGFVQF + SA D L EEH IDGR +D+K+A+ R+ AP RA +++ KIFVGGL+Q V + DF+ YF KFG + DAVVM D+ T RSRGFGF+TY + + V +VMN TH L+ K VE+K A PRD
Sbjct: 1 MSDERPERSNDVTGKLFLGGVSWQTTEDGLKFYFEKFGKLKDCAVMKDKFTGQPRGFGFVQFEDASAVDKVLAEEHTIDGRVLDIKKAISREHAP--RAISEKIDVK---------------------KIFVGGLEQAVTEGDFKDYFGKFGDITDAVVMMDRNTNRSRGFGFVTYADAESVNRVMNE-THTLRDKVVEIKRAEPRD 183
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA) HSP 1 Score: 198 bits (504), Expect = 3.110e-54 Identity = 99/207 (47.83%), Postives = 141/207 (68.12%), Query Frame = 1
Query: 250 GKIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTKIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRDGPRPGGFNGGGGG 870
GK+F+GG++W+TT++ L+ HFGK+G L D LM++K +G+PRGFGFV F + + D L+E H IDGRT++VKRA+PRD+ TA S + A G GG+ + K+FVGGL V + DFR YF +FG++ DAVVM+D++T RSRGFGF+T++ V +V++ THEL GK VE+K A P++ GG++GG GG
Sbjct: 102 GKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEESHTIDGRTVEVKRAIPRDK------TASGPSDVRSSGAHGRGNSGGV--ITESKKVFVGGLPPSVTEQDFRRYFEEFGRITDAVVMFDRETQRSRGFGFVTFEEEGAVAEVISK-THELHGKVVEIKRAEPKEARSGGGYSGGYGG 299
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: A0A7S2XZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ50_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.200e-52 Identity = 98/195 (50.26%), Postives = 128/195 (65.64%), Query Frame = 1
Query: 244 VDGKIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTKIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPR 828
+GK+F+GG++WQTT+D L+ +F K+G L DV +M++K TG+PRGFGFV F +TS + L + H +DGR +D KRAV R+ + PR GG +GG + KIFVGGL V + DFR YF KFG + DAVVM D+ TGRSRGFGF+TYD+ VR V+ G+HE+KGK VEVK A PR
Sbjct: 3 TEGKVFIGGVSWQTTEDGLRYYFEKFGELTDVAVMKDKFTGQPRGFGFVTFKDTSVVEKVLGQTHTLDGRQVDCKRAVRREESSAPR----------------GGGYGGE-----SKKIFVGGLAPSVEEDDFRGYFDKFGTITDAVVMMDRNTGRSRGFGFVTYDDESSVRDVL-AGSHEIKGKFVEVKRAEPR 175
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: A0A8K1C8M2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8M2_PYTOL) HSP 1 Score: 194 bits (493), Expect = 1.830e-52 Identity = 97/195 (49.74%), Postives = 132/195 (67.69%), Query Frame = 1
Query: 250 GKIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDR-APQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTKIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRD 831
GK+F+GG++W+TT+D L+ HFGK+G L D LM++K TG+PRGFGFV F + +A D L+E HVIDGRT++VKRA+PRD+ AP P +D + G R + KIFVGGL V + DFR YF +FGK+ DAVVM D+ T RSRGFGF+T+D V +V++ +HE+ GK VE+K A P++
Sbjct: 99 GKLFIGGVSWETTEDSLRGHFGKYGALTDAALMKDKFTGQPRGFGFVTFADATAIDRVLEESHVIDGRTVEVKRAIPRDKTAPGP---SDGRFGGGYGRXXXXXXXXXXXGYTESKKIFVGGLAPSVTEQDFRQYFEEFGKITDAVVMIDRDTQRSRGFGFVTFDEEGAVAEVISK-SHEIHGKTVEIKRAEPKE 289
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: A0A5A7PXB6_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PXB6_STRAF) HSP 1 Score: 189 bits (481), Expect = 8.480e-52 Identity = 97/208 (46.63%), Postives = 136/208 (65.38%), Query Frame = 1
Query: 253 KIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTK-IFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRDGPRPGGFNGGGGGY 873
K+F+GG++W+TT+D+L HF K+G ++ ++ +++++G+PRGF FV F+E+SA D AL+E H I GRT++VKRA+PR + +Q ++ G G + G N TK IFVGGL + + +FR+YFAKFG++ D VVM+D T R RGFGFITYD+ D V +VM HEL GK VEVK A P+DG N G GY
Sbjct: 8 KLFVGGISWETTEDILNEHFNKYGVVSGSVIAKDRVSGQPRGFAFVTFSESSAVDRALQESHQILGRTVEVKRAIPRSEQQ-----SQQQHNSRGLSRNFSGTNKGRNTDEFRTKKIFVGGLSTNLTEQEFRSYFAKFGRITDVVVMHDNMTHRPRGFGFITYDSEDSVEEVMQKNFHELAGKLVEVKRAVPKDG-----SNSSGNGY 205
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: D7FW71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW71_ECTSI) HSP 1 Score: 192 bits (489), Expect = 9.980e-52 Identity = 96/197 (48.73%), Postives = 129/197 (65.48%), Query Frame = 1
Query: 241 DVDGKIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTKIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRD 831
DV+GK+F+GG++WQTT++ L+ HFGK+GTL D+ LM++K TG PRGFGF++F + + D L +EH IDG+ +DVKRAVP+ AP P + + R + KIFVGGL V A+FR YF FG V DAVVM+D++T RSRGFGF+T+ VV +M G THE+ GK VEVK A P++
Sbjct: 145 DVEGKLFIGGISWQTTEEGLRHHFGKYGTLADIALMKDKYTGHPRGFGFIKFEDITVLDEILSQEHKIDGKVVDVKRAVPKSEAPGPSSRSSRPAET--------------------NKIFVGGLAPTVMMAEFRKYFETFGGVVDAVVMFDRQTQRSRGFGFVTFQEDAVVHDIMMG-THEINGKMVEVKRAEPKE 320
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: A0A835ZAL5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL5_9STRA) HSP 1 Score: 187 bits (474), Expect = 2.830e-51 Identity = 109/221 (49.32%), Postives = 140/221 (63.35%), Query Frame = 1
Query: 217 SSEEQQKADVDGKIFLG---GLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKE-EHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTKIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRDGPR---PGGFNG 858
S E + +DV GK+F+G G++WQT+++ L HF K+G L DV LM++K TG+PRGFGF++F + S DA L + EH IDGR +DVKRAVP+ AP P A A RQ A N K+FVGGL V A+FR YF FG V DAVVM+D++T RSRGFGF+T+ + VV+ V+ G THEL GK VEVK A P++ R PGG G
Sbjct: 4 SDEIDKDSDVTGKLFVGKSSGISWQTSEESLSYHFSKFGALADVALMKDKYTGQPRGFGFIKFEDPSVLDAVLAQPEHNIDGRVVDVKRAVPKSEAPGP-ARATRQ-------------------ADFN-KVFVGGLAPSVTAAEFRQYFEGFGAVSDAVVMFDRQTQRSRGFGFVTFQDESVVQNVLMG-THELNGKMVEVKTAEPKESRRNASPGGGRG 202
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: A0A835M6Y2_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M6Y2_9MAGN) HSP 1 Score: 188 bits (477), Expect = 3.660e-51 Identity = 93/200 (46.50%), Postives = 130/200 (65.00%), Query Frame = 1
Query: 235 KADVD-GKIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNTKIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRD 831
K D D GK+F+GG++++T ++ L+ HF K+G + D ++MR+++T PRGFGFV F + S D AL+E HVI RT++VK+AVPR Q ++++ H+ G + GG N + KIFVGGL V + +FR YF KFG++ D VVMYD T R RGFGFIT+D+ + V VM HEL K+VEVK A P+D
Sbjct: 2 KMDSDQGKLFVGGISFETKEETLRDHFSKYGEVIDTVIMRDRVTSRPRGFGFVVFADPSVVDQALEENHVICSRTVEVKKAVPRGEQHQHYHNSNQEQHSRGFGRKSSSNAGGNNTQFRSKKIFVGGLSASVTEEEFRGYFEKFGRITDVVVMYDSTTHRPRGFGFITFDSEEAVESVMQNNFHELNNKSVEVKRAVPKD 201
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Match: A0A0P1AWA8_PLAHL (Heterogeneous nuclear ribonucleoprotein 1-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWA8_PLAHL) HSP 1 Score: 186 bits (471), Expect = 1.150e-50 Identity = 96/197 (48.73%), Postives = 134/197 (68.02%), Query Frame = 1
Query: 250 GKIFLGGLTWQTTDDMLKAHFGKWGTLNDVILMRNKMTGEPRGFGFVQFTETSAADAALKEEHVIDGRTIDVKRAVPRDRAPQPRATADRQSHAGGARAQVGGRHGGMNDAPLNT---KIFVGGLDQEVNDADFRAYFAKFGKVEDAVVMYDKKTGRSRGFGFITYDNPDVVRKVMNGGTHELKGKAVEVKPASPRD 831
GK+F+GG++W+TT+D L+ HFGK+G L D LM++K TG+PRGFGFV F + SA D L+E H +DGR+++VKRA+PR+R TA S GAR+ G G + T KIFVGGL + + DFR YF +FG++ DAVVM D+ T RSRGFGFIT+++ V +V++ HE+ GK+VE+K A P++
Sbjct: 127 GKLFIGGVSWETTEDTLRQHFGKYGALTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRER------TAPGSSEFRGARS--GYSSNGXXXXGIFTESKKIFVGGLAPTIAEQDFRHYFEEFGRITDAVVMIDRDTQRSRGFGFITFEDESSVAEVISK-NHEIHGKSVEIKRAEPKE 314 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5773.13357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5773.13357.1 >prot_H-paniculata_contig5773.13357.1 ID=prot_H-paniculata_contig5773.13357.1|Name=mRNA_H-paniculata_contig5773.13357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=498bp MLNEVDEQHDVPTVAENEQVQTEQPTSMVTDEEATANGTATDGAPETNGTback to top mRNA from alignment at H-paniculata_contig5773:4489..11648+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5773.13357.1 ID=mRNA_H-paniculata_contig5773.13357.1|Name=mRNA_H-paniculata_contig5773.13357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7160bp|location=Sequence derived from alignment at H-paniculata_contig5773:4489..11648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5773:4489..11648+ >mRNA_H-paniculata_contig5773.13357.1 ID=mRNA_H-paniculata_contig5773.13357.1|Name=mRNA_H-paniculata_contig5773.13357.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2988bp|location=Sequence derived from alignment at H-paniculata_contig5773:4489..11648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |