mRNA_H-paniculata_contig5771.13354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5771.13354.1
Unique NamemRNA_H-paniculata_contig5771.13354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: D7FLM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM7_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.410e-21
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:   19 AGGSAEQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELRGSGDA 174
            +GGSAEQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELRGSGDA
Sbjct:  253 SGGSAEQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELRGSGDA 304
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BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: A0A836CBQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.790e-10
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   34 EQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELRGSGDA 174
            +QTEF FRLHLYKAKVLLL +  K  KKE+KSALEIFQRELR  G A
Sbjct:  281 DQTEFQFRLHLYKAKVLLLLQDHKPCKKEVKSALEIFQRELRKDGAA 327
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BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: H3GFI8_PHYRM (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=H3GFI8_PHYRM)

HSP 1 Score: 61.2 bits (147), Expect = 2.960e-9
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   40 TEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELR 159
            TEF FRLHLY+AK +LLQ  TKT+KKE+KSALEIFQ+E++
Sbjct:  226 TEFRFRLHLYRAKFMLLQSNTKTAKKEVKSALEIFQKEIK 265
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BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: K8YV70_NANGC (CCR4-NOT transcription complex subunit 10 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV70_NANGC)

HSP 1 Score: 61.2 bits (147), Expect = 2.980e-9
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   19 AGGSAEQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELR 159
            +G   E  EF FRLHLYKAKV LL    K+SKKE+KSALEIFQRELR
Sbjct:  224 SGKGLETAEFTFRLHLYKAKVRLLLRDIKSSKKELKSALEIFQRELR 270
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BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: A0A3F2RPM5_9STRA (MPN domain-containing protein n=6 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RPM5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.680e-9
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   40 TEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELR--GSGDAG 177
            TEF FRLHLY+AK +LLQ   KT+KKE+KSALEIFQ+E++    GDAG
Sbjct: 2570 TEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIKTYDRGDAG 2617
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BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: W2H685_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2H685_PHYPR)

HSP 1 Score: 58.9 bits (141), Expect = 1.940e-8
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   40 TEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELR 159
            TEF FRLHLY+AK +LLQ   KT+KKE+KSALEIFQ+E++
Sbjct:  229 TEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIK 268
[Close]
BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: A0A6A3NFY3_9STRA (Pre-mRNA-processing-splicing factor 8 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NFY3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.990e-8
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   40 TEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELR 159
            TEF FRLHLY+AK +LLQ   KT+KKE+KSALEIFQ+E++
Sbjct: 2644 TEFRFRLHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIK 2683
[Close]
BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: A0A2D4BX71_PYTIN (CCR4-NOT transcription complex subunit, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX71_PYTIN)

HSP 1 Score: 58.5 bits (140), Expect = 2.650e-8
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   31 AEQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQREL--RGSGDAG 177
            A+  EF FRLHLYKAK++LLQ   K +KKE+KSALEIFQ+E+  R  GD G
Sbjct:  252 ADVVEFRFRLHLYKAKMMLLQSNLKIAKKEVKSALEIFQKEIXARDRGDDG 302
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BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: A0A5D6Y176_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y176_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.650e-8
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   34 EQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELR 159
            + TEF FRLHLYKAK +LL+   KT+KKE+KSALEIFQ+E++
Sbjct:  266 DATEFRFRLHLYKAKFVLLEANLKTAKKEVKSALEIFQKEIK 307
[Close]
BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Match: A0A484DTF1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTF1_BRELC)

HSP 1 Score: 58.2 bits (139), Expect = 3.620e-8
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   40 TEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQRELR 159
            TEF FR+HLY+AK +LLQ   KT+KKE+KSALEIFQ+E++
Sbjct:  224 TEFRFRMHLYRAKFMLLQSNLKTAKKEVKSALEIFQKEIK 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5771.13354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLM7_ECTSI1.410e-2198.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBQ7_9STRA1.790e-1074.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H3GFI8_PHYRM2.960e-972.50Uncharacterized protein n=22 Tax=Phytophthora TaxI... [more]
K8YV70_NANGC2.980e-970.21CCR4-NOT transcription complex subunit 10 n=3 Tax=... [more]
A0A3F2RPM5_9STRA5.680e-966.67MPN domain-containing protein n=6 Tax=Peronosporac... [more]
W2H685_PHYPR1.940e-870.00Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A6A3NFY3_9STRA1.990e-870.00Pre-mRNA-processing-splicing factor 8 n=6 Tax=Phyt... [more]
A0A2D4BX71_PYTIN2.650e-862.75CCR4-NOT transcription complex subunit, putative (... [more]
A0A5D6Y176_9STRA2.650e-866.67Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A484DTF1_BRELC3.620e-867.50Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5771contigH-paniculata_contig5771:1718..3118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog2880.D7FLM7
Preferred nameCNOT10
KEGG koko:K07427,ko:K12607
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0019439,GO:0022402,GO:0023052,GO:0030014,GO:0030330,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0032268,GO:0032269,GO:0032991,GO:0033554,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0035556,GO:0042770,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:2000045,GO:2000112,GO:2000113,GO:2000134
EggNOG free text desc.regulation of translation
EggNOG OGsKOG2471@1,KOG2471@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-17_000560.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00199,ko03019
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930625.32289-CDS-H-paniculata_contig5771:1717..18341622930625.32289-CDS-H-paniculata_contig5771:1717..1834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5771 1718..1834 -
1691481377.9927838-CDS-H-paniculata_contig5771:1717..18341691481377.9927838-CDS-H-paniculata_contig5771:1717..1834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5771 1718..1834 -
1622930625.345288-CDS-H-paniculata_contig5771:3019..31181622930625.345288-CDS-H-paniculata_contig5771:3019..3118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5771 3020..3118 -
1691481378.0104084-CDS-H-paniculata_contig5771:3019..31181691481378.0104084-CDS-H-paniculata_contig5771:3019..3118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5771 3020..3118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5771.13354.1prot_H-paniculata_contig5771.13354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5771 1718..3118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5771.13354.1

>prot_H-paniculata_contig5771.13354.1 ID=prot_H-paniculata_contig5771.13354.1|Name=mRNA_H-paniculata_contig5771.13354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
GGSSSLAGGSAEQTEFAFRLHLYKAKVLLLQEQTKTSKKEIKSALEIFQR
ELRGSGDAGGGGVGVGAGAGDG
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mRNA from alignment at H-paniculata_contig5771:1718..3118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5771.13354.1 ID=mRNA_H-paniculata_contig5771.13354.1|Name=mRNA_H-paniculata_contig5771.13354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1401bp|location=Sequence derived from alignment at H-paniculata_contig5771:1718..3118- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGGTCCTCGTCTCTGGCTGGTGGATCGGCGGAACAAACGGAGTTCGC
TTTTCGCCTGCACCTCTACAAGGCTAAGGTGTTGCTCTTGCAGGAACAGG
TGATGCGGTGTGATGTAATGTAGTGTGGTGTGTGATGCTATATTACAACC
TTTTGGGAACTTGTCATCCACTTAATGAGCTGTGGAGCAGTCTGTACTCG
GGTGATTCCCGAACAAACAAGTCTTCATGCGAGCGTAGCAAGCCATTGCT
AACAACGCAGCAAGATCCATCGGTAGAGGATAAGCATGAAGTAGCTGTGC
CGGCGTAATAACCATAGCCTTAGTCATACTCTTACCAGTTATACTCTCGT
GATACCGCGGACATTGATTGCACCCGGGTTCAAACATTCAACTTTTCTAC
CTTAACGCGGTTGTTTCAGCATGTTCTTATACGGTGCTATTTGATCACGA
AACGTGGTGTGTCATTGGTTATATCTTGTGGAGACGTGTTGATTGCTCTG
TAGATCATCGATGGTCTCTCCGTTTTTGGCACAGTCGCGTTTTAAAATCG
TCCGTACCCCGATTCGGTTGGCATCTCCTGGTTGTATGGTGGTAAAACCT
TTGAGAGGTGAGGGGCTGTAGGTGTAAAAACGTGGACCGTAGTCTCTCGA
CTATTGACGTTGTATTGCTACATTGCTGGGAAGGAACGTGCCGGATTTTT
CTCCGGGCCGGCCGTTAGATAGTCGTGATCGGTTCATTGCTACTCCAACC
GGATTATGCCCGCATGGGGTTTTGGGCATTCCGGGTAACCAAATATTGCA
CATTCGGTACATGTGACTATGTCTGAAGTACCGAATGGGATCTTGATCTT
CGCGCGCATGTATCAACATCACCGCGCAACACACAGCGAACACGTCGCTT
CGTGTGTCATGTACTTTGGGGTATACTTTGCTTATGTGCTCCTGGTGGAG
TATGGTTATAGATATTTTTGCCGTAGAGTATTACAGTTGCCAGTGTCAGC
GAACATCACATGCCATTAATCCGAAGGGATTAATAAATCCAAGTCTAATG
GTCCCCCTAATGGTAGGAATACTCTGTGGTTCTCTCTCTGGTCTGTTCTA
GTCGGGTCCGGTCCGCTTTTTTTTTAGCTCCACAGCCAAGACCTCCACAA
ATTAGATCCAAATCGGCCTCGAGAGTTTCCAATTCATTTGTGATGATCCC
TCCTATGGTAGGGCTACTCTCTGTCTCTGGTCTTATCTAGTTTAGTCGGT
CCCGTCCGGTTTGCTTTTTTCATTTTTACTGTAGACCAAGACGTCCAAAA
AGGAGATTAAAAGCGCTCTTGAGATTTTCCAGCGAGAGTTGAGAGGGTCC
GGCGACGCTGGTGGTGGGGGCGTGGGTGTGGGAGCGGGAGCTGGGGATGG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig5771:1718..3118-

>mRNA_H-paniculata_contig5771.13354.1 ID=mRNA_H-paniculata_contig5771.13354.1|Name=mRNA_H-paniculata_contig5771.13354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig5771:1718..3118- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGGTCCTCGTCTCTGGCTGGTGGATCGGCGGAACAAACGGAGTTCGC
TTTTCGCCTGCACCTCTACAAGGCTAAGGTGTTGCTCTTGCAGGAACAGG
GTGGGTCCTCGTCTCTGGCTGGTGGATCGGCGGAACAAACGGAGTTCGCT
TTTCGCCTGCACCTCTACAAGGCTAAGGTGTTGCTCTTGCAGGAACAGAC
CAAGACGTCCAAAAAGGAGATTAAAAGCGCTCTTGAGATTTTCCAGCGAG
AGTTGAGAGGGTCCGGCGACGCTGGTGGTGGGGGCGTGGGTGTGGGAGCG
GGAGCTGGGGATGGAACCAAGACGTCCAAAAAGGAGATTAAAAGCGCTCT
TGAGATTTTCCAGCGAGAGTTGAGAGGGTCCGGCGACGCTGGTGGTGGGG
GCGTGGGTGTGGGAGCGGGAGCTGGGGATGGA
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