mRNA_H-paniculata_contig5766.13348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5766.13348.1
Unique NamemRNA_H-paniculata_contig5766.13348.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5766.13348.1 vs. uniprot
Match: A0A6H5KHK7_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.440e-5
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   22 KLKVLFHVDDAGVPSVQSARVEYEEQVTEFVEVPKPAP 135
            K+   F VDD GVPSV SAR+EY+E+VTE VEVP P P
Sbjct:  683 KVNFFFRVDDGGVPSVHSARLEYDEEVTELVEVPAPVP 720
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5766.13348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHK7_9PHAE2.440e-565.79HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5766contigH-paniculata_contig5766:10880..12618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size502
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930624.2832515-CDS-H-paniculata_contig5766:10879..109591622930624.2832515-CDS-H-paniculata_contig5766:10879..10959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5766 10880..10959 +
1691481377.5294678-CDS-H-paniculata_contig5766:10879..109591691481377.5294678-CDS-H-paniculata_contig5766:10879..10959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5766 10880..10959 +
1622930624.3059592-CDS-H-paniculata_contig5766:12198..126161622930624.3059592-CDS-H-paniculata_contig5766:12198..12616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5766 12199..12616 +
1691481377.5480428-CDS-H-paniculata_contig5766:12198..126161691481377.5480428-CDS-H-paniculata_contig5766:12198..12616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5766 12199..12616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5766.13348.1prot_H-paniculata_contig5766.13348.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5766 10880..12616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5766.13348.1

>prot_H-paniculata_contig5766.13348.1 ID=prot_H-paniculata_contig5766.13348.1|Name=mRNA_H-paniculata_contig5766.13348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
HESDPKPKLKVLFHVDDAGVPSVQSARVEYEEQVTEFVEVPKPAPRRTPP
SAPSASDRENYNSDSRGQKKASIEEKRKDGGESCTSSSSTGSASVDSAGI
HSTGAGAGGTGSASAGSTTTGSASKPSPSPREGGETQEAVHGGGGGGGGG
GSGEEGKNDAEGDAVE
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mRNA from alignment at H-paniculata_contig5766:10880..12618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5766.13348.1 ID=mRNA_H-paniculata_contig5766.13348.1|Name=mRNA_H-paniculata_contig5766.13348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1739bp|location=Sequence derived from alignment at H-paniculata_contig5766:10880..12618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGAGAGTGACCCAAAACCGAAACTAAAGGTTTTGTTTCATGTGGACGA
TGCTGGAGTGCCAAGCGTGCAGTCGGCCAGGTCAGTATATACATATTTCG
TTGGGTGATGGTGGTGGTGGTGGTGGTGGTAAGAGTACCATAGCCCACAG
GCAGGACGTACGTGAAAACACGCGGTATATATAGAGAGAACTATATATAT
ATATATATTGCATTTCAAGCAAACTTGTTTGTCAAAACGTGGAGGCATTA
CAGCAATGTACTGAAGTTTTGGGAGCAAAAATGTGGCGGACGCGCCCTTT
GTGTTATTTTAACCCGACAGTGACAGGGGCTGATACAAACGCCGCCTGGG
TTTTTACAGTGCCCGTGATGCTGTTGTCCCTCCTTCTGAAAACAGGGGTT
CAGACGACGAACGTCGAGGCTTGAAATTTTGTTTTGGGTGAAATCACTGC
ACTTGCTATGTATAGTAGATGCTAGCGGCCGTGACATAATTGAATGCGCA
TCCCTTTGAAGTGCTCCCCTGCACGTCCGTCTGCCCACTGCCGAGAACAC
CCCGATGTGTGGCTGTAGCAATTCCAGCTGGCCCTTGGTATATTGATTTC
AGGGGATGACGATATGATTTGTTTGTCATCCGTATTTATTTCATAGTTTG
GAAAAAACACGAAAGGTGTATTTTTCCGTAGAGGTGCGTGATTGGGGTAG
CAGGTCGACGTTACTTGGATATCGGGTTTCCATATCCTGAATAACGTTGA
GGTCACGACTACACCCGTGCCGTCTGTGGTTTGTCCAAGACCCACCGAGA
TTCGTTCTTGATATACTACTTGCATAAAGGCTTGAGAATATGTTCCGAGA
CGACGTTGATATACTTGGGGGTATTATGTAAAAGGAGCACATTCACGATA
AAATCGTTACATATATATTTATTATATATAAAAAAGCCCCGTTAGCTTTG
CAAATATTGTCGTGTTTAGTCTAATCTGCCTTTTAGTCTGTCAATCGACT
TTATAAATAGTATAAAAGATTACCTTGTTAAGTGACGTTGGTGTTGTACA
TAGATTTCGTTGGCCCATATATATATATATACATATATACTATACAGCCA
GCTGTCTCTCGGCATGAGGCTAACTGTGCACGAGACCTCGGTGGACTGAC
TGCTGTTCGAGCCGATCTTTTCGTTACCTTGTGTTTTTAGTGGTAGGCCC
TTATGCGCGTCGTCACTGCCGCGCATGTGAATGGTTCGTGCCCCTTCTCC
CGTCCTCGTCTGCGTTCCTTGCTCCTCTCGCTGCCGCTACCGTTGCTGCT
ACTGCTACTGCTGGTCCAGGGTCGAGTATGAGGAACAGGTTACGGAGTTT
GTGGAGGTGCCCAAGCCGGCTCCGAGACGGACGCCGCCATCAGCACCTTC
CGCATCCGATCGAGAAAATTACAACAGCGACAGCCGTGGCCAGAAAAAAG
CGTCGATCGAGGAGAAGAGGAAGGATGGCGGCGAATCTTGTACCAGTTCG
TCTAGTACCGGTTCGGCGAGTGTTGATTCAGCTGGTATCCATTCGACTGG
TGCTGGCGCGGGTGGTACGGGCTCGGCTAGTGCCGGTTCGACAACCACCG
GTTCGGCATCGAAACCATCGCCGTCACCACGAGAAGGAGGGGAAACTCAG
GAGGCTGTACATGGCGGCGGCGGCGGCGGCGGCGGGGGCGGCAGCGGCGA
GGAGGGAAAAAATGATGCCGAAGGTGATGCTGTGGAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig5766:10880..12618+

>mRNA_H-paniculata_contig5766.13348.1 ID=mRNA_H-paniculata_contig5766.13348.1|Name=mRNA_H-paniculata_contig5766.13348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig5766:10880..12618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGAGAGTGACCCAAAACCGAAACTAAAGGTTTTGTTTCATGTGGACGA
TGCTGGAGTGCCAAGCGTGCAGTCGGCCAGCATGAGAGTGACCCAAAACC
GAAACTAAAGGTTTTGTTTCATGTGGACGATGCTGGAGTGCCAAGCGTGC
AGTCGGCCAGGGTCGAGTATGAGGAACAGGTTACGGAGTTTGTGGAGGTG
CCCAAGCCGGCTCCGAGACGGACGCCGCCATCAGCACCTTCCGCATCCGA
TCGAGAAAATTACAACAGCGACAGCCGTGGCCAGAAAAAAGCGTCGATCG
AGGAGAAGAGGAAGGATGGCGGCGAATCTTGTACCAGTTCGTCTAGTACC
GGTTCGGCGAGTGTTGATTCAGCTGGTATCCATTCGACTGGTGCTGGCGC
GGGTGGTACGGGCTCGGCTAGTGCCGGTTCGACAACCACCGGTTCGGCAT
CGAAACCATCGCCGTCACCACGAGAAGGAGGGGAAACTCAGGAGGCTGTA
CATGGCGGCGGCGGCGGCGGCGGCGGGGGCGGCAGCGGCGAGGAGGGAAA
AAATGATGCCGAAGGTGATGCTGTGGAGGGTCGAGTATGAGGAACAGGTT
ACGGAGTTTGTGGAGGTGCCCAAGCCGGCTCCGAGACGGACGCCGCCATC
AGCACCTTCCGCATCCGATCGAGAAAATTACAACAGCGACAGCCGTGGCC
AGAAAAAAGCGTCGATCGAGGAGAAGAGGAAGGATGGCGGCGAATCTTGT
ACCAGTTCGTCTAGTACCGGTTCGGCGAGTGTTGATTCAGCTGGTATCCA
TTCGACTGGTGCTGGCGCGGGTGGTACGGGCTCGGCTAGTGCCGGTTCGA
CAACCACCGGTTCGGCATCGAAACCATCGCCGTCACCACGAGAAGGAGGG
GAAACTCAGGAGGCTGTACATGGCGGCGGCGGCGGCGGCGGCGGGGGCGG
CAGCGGCGAGGAGGGAAAAAATGATGCCGAAGGTGATGCTGTGGAG
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