mRNA_H-paniculata_contig57645.13344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57645.13344.1
Unique NamemRNA_H-paniculata_contig57645.13344.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57645.13344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57645contigH-paniculata_contig57645:394..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size618
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57645.13344.1prot_H-paniculata_contig57645.13344.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57645 598..981 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930624.0414534-UTR-H-paniculata_contig57645:393..5971622930624.0414534-UTR-H-paniculata_contig57645:393..597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57645 394..597 +
1691481377.4248762-UTR-H-paniculata_contig57645:393..5971691481377.4248762-UTR-H-paniculata_contig57645:393..597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57645 394..597 +
1622930624.0964885-UTR-H-paniculata_contig57645:981..10111622930624.0964885-UTR-H-paniculata_contig57645:981..1011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57645 982..1011 +
1691481377.4486961-UTR-H-paniculata_contig57645:981..10111691481377.4486961-UTR-H-paniculata_contig57645:981..1011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57645 982..1011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930624.0648375-CDS-H-paniculata_contig57645:597..9811622930624.0648375-CDS-H-paniculata_contig57645:597..981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57645 598..981 +
1691481377.4356477-CDS-H-paniculata_contig57645:597..9811691481377.4356477-CDS-H-paniculata_contig57645:597..981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57645 598..981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57645.13344.1

>prot_H-paniculata_contig57645.13344.1 ID=prot_H-paniculata_contig57645.13344.1|Name=mRNA_H-paniculata_contig57645.13344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MSSCGRSRAHRIQELILKLRRIFSVFFFFFEKTIRKYSCLSRGAGLFIEH
ESSERTEPCFPVRAIFEWPTAFPYTAKYLANCALPTVSTSTLAFSGQAIK
LKYEQQRIEREGGARCKKGDDFLFFFF*
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mRNA from alignment at H-paniculata_contig57645:394..1011+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57645.13344.1 ID=mRNA_H-paniculata_contig57645.13344.1|Name=mRNA_H-paniculata_contig57645.13344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig57645:394..1011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATAGATGGGAGGCGCGGGCGCGGGGGGAAGGGTTTGCATGTAGTGCATA
CCGTAGCTGTTAAACTAATTCAGCCCCTGGACAAACACGAATACCTGCAA
ATGTTTTTCACAAAAAACTGCAAGGATTCGCTTGAGTTTCAGAATGAGCG
GACACATAAAACAAAGTACCCACCCCCCTGTCCATTCGATTTACGAGTAT
TATTATGAGCAGTTGCGGACGGTCCAGGGCACATAGAATACAGGAACTTA
TTCTGAAACTCAGGCGAATATTTTCAGTTTTTTTTTTTTTTTTTGAGAAG
ACCATTCGCAAGTATTCGTGTTTGTCCAGGGGGGCTGGACTATTTATTGA
ACACGAGTCCTCGGAGAGGACGGAGCCTTGTTTCCCCGTCAGAGCGATTT
TCGAATGGCCAACCGCTTTTCCCTACACTGCAAAATATCTCGCTAACTGT
GCTTTACCTACCGTATCTACCTCAACCCTCGCGTTTTCAGGCCAAGCTAT
AAAATTAAAATATGAACAGCAGCGTATAGAACGGGAGGGGGGGGCAAGGT
GCAAAAAAGGTGACGATTTCCTTTTTTTTTTTTTTTAACCCCCGGAAGGC
TAAGGCAAAACCCTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig57645:394..1011+

>mRNA_H-paniculata_contig57645.13344.1 ID=mRNA_H-paniculata_contig57645.13344.1|Name=mRNA_H-paniculata_contig57645.13344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig57645:394..1011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAGTTGCGGACGGTCCAGGGCACATAGAATACAGGAACTTATTCT
GAAACTCAGGCGAATATTTTCAGTTTTTTTTTTTTTTTTTGAGAAGACCA
TTCGCAAGTATTCGTGTTTGTCCAGGGGGGCTGGACTATTTATTGAACAC
GAGTCCTCGGAGAGGACGGAGCCTTGTTTCCCCGTCAGAGCGATTTTCGA
ATGGCCAACCGCTTTTCCCTACACTGCAAAATATCTCGCTAACTGTGCTT
TACCTACCGTATCTACCTCAACCCTCGCGTTTTCAGGCCAAGCTATAAAA
TTAAAATATGAACAGCAGCGTATAGAACGGGAGGGGGGGGCAAGGTGCAA
AAAAGGTGACGATTTCCTTTTTTTTTTTTTTTAAATGAGCAGTTGCGGAC
GGTCCAGGGCACATAGAATACAGGAACTTATTCTGAAACTCAGGCGAATA
TTTTCAGTTTTTTTTTTTTTTTTTGAGAAGACCATTCGCAAGTATTCGTG
TTTGTCCAGGGGGGCTGGACTATTTATTGAACACGAGTCCTCGGAGAGGA
CGGAGCCTTGTTTCCCCGTCAGAGCGATTTTCGAATGGCCAACCGCTTTT
CCCTACACTGCAAAATATCTCGCTAACTGTGCTTTACCTACCGTATCTAC
CTCAACCCTCGCGTTTTCAGGCCAAGCTATAAAATTAAAATATGAACAGC
AGCGTATAGAACGGGAGGGGGGGGCAAGGTGCAAAAAAGGTGACGATTTC
CTTTTTTTTTTTTTTTAA
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