prot_H-paniculata_contig5764.13342.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5764.13342.1
Unique Nameprot_H-paniculata_contig5764.13342.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length158
Homology
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BLAST of mRNA_H-paniculata_contig5764.13342.1 vs. uniprot
Match: A0A6H5JN42_9PHAE (Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN42_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.520e-58
Identity = 111/156 (71.15%), Postives = 132/156 (84.62%), Query Frame = 0 
Query:    2 YEQAAKRRKKNLHKSIDDIAYLETEVAEQERLREERRKTKRLLKAQKAELEAKGAAAGGVFGPSAGIAGMGEIGATAGRVDNRDIIAGRSVPVNLSEELHGSLRQLRTQGSVLLDKVELLKANKAHPDKRRAKERAKKAPKGFRKKHKFADRYKDD 157
            +E A +R +K++ KSID +  L+ EVAEQERLREERR+TKRLLKAQKA++EA+GAAAGGVFGPSAG+A +     +  R +N+D+IAGRSVPVNL EELHGSLRQL+ QGSVL DKVELLKANKAHPD+RR KERAKKAPKGF+ KH + DRYKDD
Sbjct:  287 HELAVRRNRKHMIKSIDQVTALQQEVAEQERLREERRQTKRLLKAQKAKVEAEGAAAGGVFGPSAGVAAL-----STKRQNNKDVIAGRSVPVNLGEELHGSLRQLKAQGSVLHDKVELLKANKAHPDRRRGKERAKKAPKGFKYKHTYKDRYKDD 437
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BLAST of mRNA_H-paniculata_contig5764.13342.1 vs. uniprot
Match: A0A835YY73_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY73_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.440e-11
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 0 
Query:   85 DIIAGRSVPVNLSEELHGSLRQLRTQGSVLLDKVELLKANKAHPDKRRAKERAK--KAPKGFRKKHKFADRYKD 156
            D++   S+PVNL+EEL GSLRQ+RT+GS+L+D+V +LK    HPDK++A  RAK  K PK   K+ KF +RYKD
Sbjct:  271 DVMQAPSIPVNLAEELSGSLRQMRTRGSLLVDRVAMLKRVGVHPDKQKAAARAKMEKKPK---KRFKFQERYKD 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5764.13342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN42_9PHAE1.520e-5871.15Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarp... [more]
A0A835YY73_9STRA4.440e-1155.41Ribosome biogenesis protein NOP53 n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5764contigH-paniculata_contig5764:2028..5234 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5764.13342.1mRNA_H-paniculata_contig5764.13342.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5764 1300..5362 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5764.13342.1 ID=prot_H-paniculata_contig5764.13342.1|Name=mRNA_H-paniculata_contig5764.13342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MYEQAAKRRKKNLHKSIDDIAYLETEVAEQERLREERRKTKRLLKAQKAE
LEAKGAAAGGVFGPSAGIAGMGEIGATAGRVDNRDIIAGRSVPVNLSEEL
HGSLRQLRTQGSVLLDKVELLKANKAHPDKRRAKERAKKAPKGFRKKHKF
ADRYKDD*
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