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Homology
BLAST of mRNA_H-paniculata_contig5764.13342.1 vs. uniprot
Match: A0A6H5JN42_9PHAE (Ribosome biogenesis protein NOP53 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN42_9PHAE) HSP 1 Score: 226 bits (575), Expect = 1.330e-65 Identity = 128/183 (69.95%), Postives = 152/183 (83.06%), Query Frame = 3
Query: 51 SIGQKTPATGKLTRTQRNKLARKKQAMYEQAAKRRKKNLHKSIDDIAYLETEVAEQERLREERRKTKRLLKAQKAELEAKGAAAGGVFGPSAGIAGMGEIGATAGRVDNRDIIAGRSVPVNLSEELHGSLRQLRTQGSVLLDKVELLKANKAHPDKRRAKERAKKAPKGFRKKHKFADRYKDD 599
S+G+ TPA+GKLTR QRNK R K A +E A +R +K++ KSID + L+ EVAEQERLREERR+TKRLLKAQKA++EA+GAAAGGVFGPSAG+A + + R +N+D+IAGRSVPVNL EELHGSLRQL+ QGSVL DKVELLKANKAHPD+RR KERAKKAPKGF+ KH + DRYKDD
Sbjct: 260 SLGKPTPASGKLTRAQRNKQKRAKAAKHELAVRRNRKHMIKSIDQVTALQQEVAEQERLREERRQTKRLLKAQKAKVEAEGAAAGGVFGPSAGVAAL-----STKRQNNKDVIAGRSVPVNLGEELHGSLRQLKAQGSVLHDKVELLKANKAHPDRRRGKERAKKAPKGFKYKHTYKDRYKDD 437
BLAST of mRNA_H-paniculata_contig5764.13342.1 vs. uniprot
Match: A0A835YY73_9STRA (Ribosome biogenesis protein NOP53 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY73_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 8.870e-10 Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 3
Query: 381 DIIAGRSVPVNLSEELHGSLRQLRTQGSVLLDKVELLKANKAHPDKRRAKERAK--KAPKGFRKKHKFADRYKD 596
D++ S+PVNL+EEL GSLRQ+RT+GS+L+D+V +LK HPDK++A RAK K PK K+ KF +RYKD
Sbjct: 271 DVMQAPSIPVNLAEELSGSLRQMRTRGSLLVDRVAMLKRVGVHPDKQKAAARAKMEKKPK---KRFKFQERYKD 341
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 127.9 |
| Seed ortholog evalue | 4.3e-27 |
| Seed eggNOG ortholog | 2880.D7G5F1 |
| KEGG ko | ko:K14840 |
| KEGG Pathway | ko05168,map05168 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Nop53 (60S ribosomal biogenesis) |
| EggNOG OGs | 2CZAS@1,2S9EB@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03009 |
| Exons | 3 |
| Model size | 1330 |
| Cds size | 474 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5764.13342.1 >prot_H-paniculata_contig5764.13342.1 ID=prot_H-paniculata_contig5764.13342.1|Name=mRNA_H-paniculata_contig5764.13342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MYEQAAKRRKKNLHKSIDDIAYLETEVAEQERLREERRKTKRLLKAQKAE
LEAKGAAAGGVFGPSAGIAGMGEIGATAGRVDNRDIIAGRSVPVNLSEEL
HGSLRQLRTQGSVLLDKVELLKANKAHPDKRRAKERAKKAPKGFRKKHKF
ADRYKDD* back to topmRNA from alignment at H-paniculata_contig5764:1300..5362- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5764.13342.1 ID=mRNA_H-paniculata_contig5764.13342.1|Name=mRNA_H-paniculata_contig5764.13342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4063bp|location=Sequence derived from alignment at H-paniculata_contig5764:1300..5362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACGATGAGTCATCTGATGAAGACGAAGGGGGAGATGATCTACCTTCG
TCCATTGGCCAGAAGACACCGGCAACGGGCAAGCTGACGCGCACCCAGCG
AAACAAGCTCGCCAGGAAGAAACAGGCTATGTACGAACAGGCAGCCAAGA
GGAGGAAGAAAAACTTGCACAAGTCTATCGATGAGTAAGTGTGGCGTCGG
TTTTTGCTTTTCTCTTTTCTCACCAAAGCTCTGGGGAGGTCAAGAGTACG
GGTAGGGATTGACCGAAATGTCGGCGTAGTCCTTCTGTTTTTGTCGTTGA
GCCACCCACCCACGCTGGCTCGCTGCACTCGCAAAGAGATTGTAGTGAAG
GTTGGTTTATGCTGATGAAATGTGGCAGTAGAGCAACGGTGATGTGGTTA
TGTAGTCATATTCTGGTGTTTTATGGTCATACTCACCTTGTCCTGAAAGA
GAGGAAATAGCTTTTTTCTACCCACAGCGTGTCGCCGGGCGTAGCGTCTG
TCGATACAGCAAGGGAGTGGTCATTTTTGTGTACCACGGAGGCGTGAAGG
TGTTTTAAGGGAAAATGTATATCGAGAGGAGAGATGTGACGTTATAGGAA
GACCTCGTCAATTGATAGAGATCGACAAGATCTTTCCAACGGCACACTTT
CGTTGTCAGCGGCTATTGCCGTAGTTGTGGATGATCAATTCGGTTTGAGA
AGCACATTCGTATCCCGGTGACGTCGATATATCGTGGCTTTATGAGATGC
CATGTTCGTGCCCCGCTCGCACTGTGTTTTAACGAACCTGGAAATCTACG
AAATCTATTACGGAGTTGAATTGTTTGATGTGACCAACTTTTTTCTACTG
ATGGCAAAAGTCTGACCTCTTTCCACCCACCAAACTTTTGTCGGAAGTTG
TGGAGATTTTTGAAAGCGACCTCGCCATCCGGTGGGGACTGGAAATTCGC
ACTTCCCGACGAGTAACATGGCTTTTGATAACATCGACATTGAGTTTCAC
GGTTGTATCATGCACGTGTTTGTGTGTGTGCCGCGCGGCTTAGTTTTTGG
GGCTCCGGTTTTGTTGTGATTGGGTTCACTGGGTTTCACTAGTCGTCGCT
TCCACACCAAACAACTACTATTACGGGGGAACATGATAATCAGGAGGATT
TTTTTTGTCTTTTCGGAAACTGAACTCTGTTTTTCCCCGTTGGTCTACAG
ATTTTCGCTTCTAGCTGAAAACAAAAACAAACTCTAGAATCACTTGCATA
GGCATGCAGCAACCGATTGGTGCATATCGTATTGCATGACTTTCACCTCA
GAATCTCAATTTTCTAATTTACTCCTGATTATAATCCTCCGTAATAGACA
TAATTTGATTAATTACGCTCCTCCTATATATATACTTCTTTTTTTTTGAG
AAACTGGGACTTCCGTCCTGTCGTCTGACGCGAATTCCTGCGCCAAAAGC
CTTCCAACAAACGTAACATCAGTTAAAGCTGTTTCTCGTTAGTCATGGGG
GGGGATGTTGTTTAATTGAATATGTGTCATCTGGTTTGTGCTTGGTTTGC
TTTCCACCTGATGTTTTTTTTCGTAACTTTGTGCCCCGTTTGGTGTGTCA
GCTTGTTCCGATCCGATGTTTTTTTTTTAATCTATTTTTCTTCAAATTTG
CCTGCGGTTCTGGTCCTTCCCATCTATGCTTTGTTGAGTTGTATCGAGTC
GTTTTTTTTTTTCTATTTTGGAAGGACTTATTTTTCGTGTTGTCTCGATT
TGCTCCACTTGTTCTAAATGCAGTATCGCATACCTCGAAACTGAAGTCGC
GGAGCAAGAGCGTCTTCGCGAAGAGCGGCGAAAAACCAAACGCCTTCTCA
AGGCCCAAAAGGCCGAGTTGGAGGCTAAAGGCGCAGCGGCCGGTGGAGTC
TTCGGACCCAGCGCGGGAATTGCGGGCATGGGTGAAATCGGGGCGACCGC
AGGGCGGGTAGACAATCGTGACATCATCGCAGGAAGATCGGTGCCCGTTA
ACTTGAGCGAGGAACTGCACGGTAGCTTGCGTCAGCTGAGAACTCAAGGC
AGTGTTTTGCTCGACAAGGTGTGTACTGTCTATCCAGAATTAATAATTTG
TCACAGCTTGCACTGGTAAAGTCTGCTCTACTGTAGTACATGTAGTATCC
CCTTTGTAAGGCATCAGTAAACCAATATCGGATGTACACACACGCACGAT
GTTGGTGTCTGAGTTTGTTCATTTTTTACAGTGTTTTGTCGTGGATTTTG
TTTTTGGTTTTGAAGTGCTTTCGAAATTGTGTGAATTATGCCAGATTATA
TGATGTGGGTCGTGTGAGCCGTTTTAGAGAAGTATCGTAGTTGGGCCGTC
GGATGCATTCTGTCTCAAACAGGCAATTCTAGGCAGTGGGAACTGGACCA
GGTCGCAAAATGATTTATATAATCTGCCGTCAGTCTAGAAAAACAGGTTT
ATTTTGTGGATTATGACCAGTGCATCGAGGCAGGGCCGATTTTTCGCGTG
CACTGTCGCATGCTTGCCATTCCGGTTGACGTCAAGCAGTAGGCTCTTGT
ACCACTTATTATGAGAAAATCTGTTTGGTCAGCCTGGGCTACTAAGCATT
GGCTTTCCGAGGAATGCCACTAATTATTTATAGTAATAACGCTTGTAGTG
CAATCTCGCGGTTTATTTTCAAGTCTTAAAATCTAGACGTGTAATAATTG
TCCCCTGGGACAAATACGAATACTTGGCGTATTCATCACGAAAATTATGA
AGCATTCGCCTTAGTTTCAGAGAGCGGACATTTGAACTAGAATAATCAAC
TCTGTCTATTCGATTTACGAGTAATATTAGCAGTCATGGATGGTCCGGCG
AACTTACAATACACGAGCTCATTTAAAACTCACACGAATACGCTAAGTAT
TCATATTTATCCGGGGGATAAAAAACTGTTTCTGGATACGAATACTCTGG
TACACGTGCATTCGTCGCGACCTAGAACACCTGCCAAATTATCTCCTTCA
GCTATTTTTTTTGGATGTTTTCGTTTGAAAGCTATTTGTGTGAAAATGGC
CAGTTTCATATGTTGTTGGTTCATCGTGTTTTCTCCTTTCTTGTCTTTTC
GTATTTTACACGAAGCTGCGTCACCCGCCGTAGGTTCATGTAAGGTACCT
TAAACGTTCCCTTGCTCTTGTCGTGATTTGTTTTTGGTTTGGCACCATTT
GCCATCGGTAAGGTGGAACTACTGAAAGCGAACAAGGCCCACCCAGACAA
GAGACGTGCCAAGGAACGTGCCAAGAAAGCTCCCAAGGGTTTCCGCAAGA
AGCATAAGTTTGCCGACAGATACAAGGATGATTGAGGGTGAACAGCAATG
CGTTACGCTTTTCGTCTCGATCTCGGCACAATAGCCCATGCCTCCTACAC
GCATGTTGAGACGCTGGTGAGAAGTCAAGCTTGCCGTTTCGCGTCTTTCC
CGATGTTTTGTTTTGTTTTTGAGTTTTTATTTTAGTACGAGATGGAAGTT
GCATGTCCCGTGTTTGGTCGCTAGGTTTGTGGAGAATTATTGTGTGGTAT
TTTTGGTGACTTTCGCTCATACAGTATGTGTAGATAGGCATTATGTTCGG
TCATGGTGTGTGATGGTTGTTGGAGGTCATCTGCTTGGTGACGTGGTGAA
GGAAGGATACCAACATTATGGAGTCCAACACTCGACCCTCCGAAAACTGT
AGAAGCAAGGGGGTATGTGAATGGAAGTGCTGTATGACGGCCTTTCAAGC
TGATAGTTTTTGACCGTTCCGTTTCGGGAGATGGCTGAGACACTCATCTT
TCTTAATTCGATTTCATGCCGGTGAAAAAATCGGCCATAGGACCAACGCT
GGAACGTCGCAATCTTCGCAACTCTCCAAAATCGTTTTACGCAAGTGGAC
CTTGGAATGAATTTGAGACACCGCCCTCGTTTAGGTTGAATTTTTTGCCT
TGAGGGGGACGCGGTGATAAAAAGCCGCCCTCAACTGATATGTCATTCTC
TGGTGGTCTCTAGTGCGGCTCAAGTTACTGCCCGGCCTGCCCCGGAGGAG
TAGGATGTGGTTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig5764:1300..5362- >mRNA_H-paniculata_contig5764.13342.1 ID=mRNA_H-paniculata_contig5764.13342.1|Name=mRNA_H-paniculata_contig5764.13342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig5764:1300..5362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGAACAGGCAGCCAAGAGGAGGAAGAAAAACTTGCACAAGTCTAT
CGATGAATGTACGAACAGGCAGCCAAGAGGAGGAAGAAAAACTTGCACAA
GTCTATCGATGATATCGCATACCTCGAAACTGAAGTCGCGGAGCAAGAGC
GTCTTCGCGAAGAGCGGCGAAAAACCAAACGCCTTCTCAAGGCCCAAAAG
GCCGAGTTGGAGGCTAAAGGCGCAGCGGCCGGTGGAGTCTTCGGACCCAG
CGCGGGAATTGCGGGCATGGGTGAAATCGGGGCGACCGCAGGGCGGGTAG
ACAATCGTGACATCATCGCAGGAAGATCGGTGCCCGTTAACTTGAGCGAG
GAACTGCACGGTAGCTTGCGTCAGCTGAGAACTCAAGGCAGTGTTTTGCT
CGACAAGTATCGCATACCTCGAAACTGAAGTCGCGGAGCAAGAGCGTCTT
CGCGAAGAGCGGCGAAAAACCAAACGCCTTCTCAAGGCCCAAAAGGCCGA
GTTGGAGGCTAAAGGCGCAGCGGCCGGTGGAGTCTTCGGACCCAGCGCGG
GAATTGCGGGCATGGGTGAAATCGGGGCGACCGCAGGGCGGGTAGACAAT
CGTGACATCATCGCAGGAAGATCGGTGCCCGTTAACTTGAGCGAGGAACT
GCACGGTAGCTTGCGTCAGCTGAGAACTCAAGGCAGTGTTTTGCTCGACA
AGGTGGAACTACTGAAAGCGAACAAGGCCCACCCAGACAAGAGACGTGCC
AAGGAACGTGCCAAGAAAGCTCCCAAGGGTTTCCGCAAGAAGCATAAGTT
TGCCGACAGATACAAGGATGATTGAGTGGAACTACTGAAAGCGAACAAGG
CCCACCCAGACAAGAGACGTGCCAAGGAACGTGCCAAGAAAGCTCCCAAG
GGTTTCCGCAAGAAGCATAAGTTTGCCGACAGATACAAGGATGATTGA back to top
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