mRNA_H-paniculata_contig5764.13343.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5764.13343.1
Unique NamemRNA_H-paniculata_contig5764.13343.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5764.13343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5764contigH-paniculata_contig5764:10974..11307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size334
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930623.8325477-UTR-H-paniculata_contig5764:10973..109831622930623.8325477-UTR-H-paniculata_contig5764:10973..10983Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5764 10974..10983 +
1691481377.3565392-UTR-H-paniculata_contig5764:10973..109831691481377.3565392-UTR-H-paniculata_contig5764:10973..10983Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5764 10974..10983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930623.8548899-CDS-H-paniculata_contig5764:10983..113071622930623.8548899-CDS-H-paniculata_contig5764:10983..11307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5764 10984..11307 +
1691481377.3678293-CDS-H-paniculata_contig5764:10983..113071691481377.3678293-CDS-H-paniculata_contig5764:10983..11307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5764 10984..11307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5764.13343.1prot_H-paniculata_contig5764.13343.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5764 10984..11307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5764.13343.1

>prot_H-paniculata_contig5764.13343.1 ID=prot_H-paniculata_contig5764.13343.1|Name=mRNA_H-paniculata_contig5764.13343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MNHIRVLMNLSTEILRRICSWTMITYSSRKLVQLAPYAGSGHRFWIGCPG
LPLCCKKIREKTHYWKGEKHGENFPEGLCTNSTVVALTFHGTFLLSLSLS
LPLPRQAN
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mRNA from alignment at H-paniculata_contig5764:10974..11307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5764.13343.1 ID=mRNA_H-paniculata_contig5764.13343.1|Name=mRNA_H-paniculata_contig5764.13343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=334bp|location=Sequence derived from alignment at H-paniculata_contig5764:10974..11307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGATTTTTATGAATCACATAAGAGTTTTGATGAATTTATCCACTGAAA
TTTTGCGCCGAATTTGTTCATGGACCATGATTACGTACAGCAGTCGAAAA
CTGGTTCAGCTAGCACCCTACGCTGGTAGTGGGCATAGGTTTTGGATTGG
CTGTCCAGGTTTGCCACTGTGCTGTAAAAAAATCCGGGAGAAAACACATT
ACTGGAAAGGGGAAAAACATGGCGAGAACTTTCCCGAAGGCCTCTGTACA
AACAGTACAGTAGTAGCTCTTACTTTTCACGGAACTTTTCTTCTGTCTCT
GTCTCTGTCTTTGCCTCTGCCTCGACAAGCAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5764:10974..11307+

>mRNA_H-paniculata_contig5764.13343.1 ID=mRNA_H-paniculata_contig5764.13343.1|Name=mRNA_H-paniculata_contig5764.13343.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig5764:10974..11307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCACATAAGAGTTTTGATGAATTTATCCACTGAAATTTTGCGCCG
AATTTGTTCATGGACCATGATTACGTACAGCAGTCGAAAACTGGTTCAGC
TAGCACCCTACGCTGGTAGTGGGCATAGGTTTTGGATTGGCTGTCCAGGT
TTGCCACTGTGCTGTAAAAAAATCCGGGAGAAAACACATTACTGGAAAGG
GGAAAAACATGGCGAGAACTTTCCCGAAGGCCTCTGTACAAACAGTACAG
TAGTAGCTCTTACTTTTCACGGAACTTTTCTTCTGTCTCTGTCTCTGTCT
TTGCCTCTGCCTCGACAAGCAAACATGAATCACATAAGAGTTTTGATGAA
TTTATCCACTGAAATTTTGCGCCGAATTTGTTCATGGACCATGATTACGT
ACAGCAGTCGAAAACTGGTTCAGCTAGCACCCTACGCTGGTAGTGGGCAT
AGGTTTTGGATTGGCTGTCCAGGTTTGCCACTGTGCTGTAAAAAAATCCG
GGAGAAAACACATTACTGGAAAGGGGAAAAACATGGCGAGAACTTTCCCG
AAGGCCTCTGTACAAACAGTACAGTAGTAGCTCTTACTTTTCACGGAACT
TTTCTTCTGTCTCTGTCTCTGTCTTTGCCTCTGCCTCGACAAGCAAAC
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