mRNA_H-paniculata_contig57612.13339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57612.13339.1
Unique NamemRNA_H-paniculata_contig57612.13339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57612.13339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57612contigH-paniculata_contig57612:2..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size418
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930623.386926-UTR-H-paniculata_contig57612:1..51622930623.386926-UTR-H-paniculata_contig57612:1..5Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57612 2..5 +
1691481377.170368-UTR-H-paniculata_contig57612:1..51691481377.170368-UTR-H-paniculata_contig57612:1..5Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57612 2..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930623.4174254-CDS-H-paniculata_contig57612:5..4191622930623.4174254-CDS-H-paniculata_contig57612:5..419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57612 6..419 +
1691481377.1793938-CDS-H-paniculata_contig57612:5..4191691481377.1793938-CDS-H-paniculata_contig57612:5..419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57612 6..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57612.13339.1prot_H-paniculata_contig57612.13339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57612 6..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57612.13339.1

>prot_H-paniculata_contig57612.13339.1 ID=prot_H-paniculata_contig57612.13339.1|Name=mRNA_H-paniculata_contig57612.13339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MAPTCASTAARRARAVSKCEDLATYVKEVAHAKFTSRKWTWYTGAIKWVN
RYVDPLAKQHPRVQKPEGYEEGWRSVDSQSLAKFVQKLIWLREEKVYESK
TSERYIENHFETNNLTRVRGSDSPLMGKGLSALIRVRL
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mRNA from alignment at H-paniculata_contig57612:2..419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57612.13339.1 ID=mRNA_H-paniculata_contig57612.13339.1|Name=mRNA_H-paniculata_contig57612.13339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=418bp|location=Sequence derived from alignment at H-paniculata_contig57612:2..419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAATGGCGCCGACCTGTGCAAGCACCGCCGCAAGAAGGGCCCGTGCCG
TTTCGAAATGTGAGGACCTGGCAACTTATGTCAAAGAAGTCGCACACGCT
AAGTTCACGAGCAGAAAGTGGACATGGTACACGGGCGCCATCAAATGGGT
TAACAGATATGTAGATCCCTTAGCCAAACAGCATCCGCGTGTACAGAAAC
CTGAAGGGTATGAGGAAGGGTGGAGATCAGTGGACTCTCAAAGCCTAGCT
AAATTCGTTCAGAAACTGATCTGGTTGAGGGAGGAAAAGGTATACGAATC
GAAAACTAGTGAAAGATACATCGAGAATCATTTTGAGACTAATAATCTAA
CAAGAGTACGCGGAAGCGACTCACCCCTAATGGGAAAGGGGTTAAGTGCA
TTAATCAGGGTTCGGCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig57612:2..419+

>mRNA_H-paniculata_contig57612.13339.1 ID=mRNA_H-paniculata_contig57612.13339.1|Name=mRNA_H-paniculata_contig57612.13339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig57612:2..419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCCGACCTGTGCAAGCACCGCCGCAAGAAGGGCCCGTGCCGTTTC
GAAATGTGAGGACCTGGCAACTTATGTCAAAGAAGTCGCACACGCTAAGT
TCACGAGCAGAAAGTGGACATGGTACACGGGCGCCATCAAATGGGTTAAC
AGATATGTAGATCCCTTAGCCAAACAGCATCCGCGTGTACAGAAACCTGA
AGGGTATGAGGAAGGGTGGAGATCAGTGGACTCTCAAAGCCTAGCTAAAT
TCGTTCAGAAACTGATCTGGTTGAGGGAGGAAAAGGTATACGAATCGAAA
ACTAGTGAAAGATACATCGAGAATCATTTTGAGACTAATAATCTAACAAG
AGTACGCGGAAGCGACTCACCCCTAATGGGAAAGGGGTTAAGTGCATTAA
TCAGGGTTCGGCTCATGGCGCCGACCTGTGCAAGCACCGCCGCAAGAAGG
GCCCGTGCCGTTTCGAAATGTGAGGACCTGGCAACTTATGTCAAAGAAGT
CGCACACGCTAAGTTCACGAGCAGAAAGTGGACATGGTACACGGGCGCCA
TCAAATGGGTTAACAGATATGTAGATCCCTTAGCCAAACAGCATCCGCGT
GTACAGAAACCTGAAGGGTATGAGGAAGGGTGGAGATCAGTGGACTCTCA
AAGCCTAGCTAAATTCGTTCAGAAACTGATCTGGTTGAGGGAGGAAAAGG
TATACGAATCGAAAACTAGTGAAAGATACATCGAGAATCATTTTGAGACT
AATAATCTAACAAGAGTACGCGGAAGCGACTCACCCCTAATGGGAAAGGG
GTTAAGTGCATTAATCAGGGTTCGGCTC
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