mRNA_H-paniculata_contig5761.13338.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5761.13338.1
Unique NamemRNA_H-paniculata_contig5761.13338.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5761.13338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5761contigH-paniculata_contig5761:9602..9965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size364
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930623.3209002-CDS-H-paniculata_contig5761:9601..99131622930623.3209002-CDS-H-paniculata_contig5761:9601..9913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5761 9602..9913 +
1691481377.148089-CDS-H-paniculata_contig5761:9601..99131691481377.148089-CDS-H-paniculata_contig5761:9601..9913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5761 9602..9913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930623.3371894-UTR-H-paniculata_contig5761:9913..99651622930623.3371894-UTR-H-paniculata_contig5761:9913..9965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5761 9914..9965 +
1691481377.1578674-UTR-H-paniculata_contig5761:9913..99651691481377.1578674-UTR-H-paniculata_contig5761:9913..9965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5761 9914..9965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5761.13338.1prot_H-paniculata_contig5761.13338.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5761 9602..9913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5761.13338.1

>prot_H-paniculata_contig5761.13338.1 ID=prot_H-paniculata_contig5761.13338.1|Name=mRNA_H-paniculata_contig5761.13338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
FPKKKQKKKLDFRNSKSKKVIFPPTIFFLNSYFNFFFRFSRYNYSVLSEV
GGKKKRKKRGKKKKKKQKHKHTHTGGLVLSARAHLYHQLTHQVFYVRQIF
SCL*
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mRNA from alignment at H-paniculata_contig5761:9602..9965+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5761.13338.1 ID=mRNA_H-paniculata_contig5761.13338.1|Name=mRNA_H-paniculata_contig5761.13338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=364bp|location=Sequence derived from alignment at H-paniculata_contig5761:9602..9965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCGAAAAAAAAACAAAAAAAAAAACTCGATTTTCGAAATTCCAAGAG
CAAAAAAGTCATATTTCCGCCTACAATATTCTTCCTCAATTCCTATTTCA
ATTTCTTTTTTCGATTTTCCCGATATAATTACAGCGTGCTATCGGAAGTA
GGGGGGAAAAAGAAGAGAAAAAAACGAGGCAAAAAAAAGAAGAAAAAACA
AAAACACAAACACACACACACCGGTGGTCTCGTTCTTTCAGCCCGTGCGC
ATCTCTACCATCAACTGACCCACCAGGTATTTTACGTACGTCAAATCTTT
TCTTGCCTGTAAGAATCGGCAATTAATACCGTTAATTTCCTCCCGATCAT
ACCCGGTCATGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5761:9602..9965+

>mRNA_H-paniculata_contig5761.13338.1 ID=mRNA_H-paniculata_contig5761.13338.1|Name=mRNA_H-paniculata_contig5761.13338.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig5761:9602..9965+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCGAAAAAAAAACAAAAAAAAAAACTCGATTTTCGAAATTCCAAGAG
CAAAAAAGTCATATTTCCGCCTACAATATTCTTCCTCAATTCCTATTTCA
ATTTCTTTTTTCGATTTTCCCGATATAATTACAGCGTGCTATCGGAAGTA
GGGGGGAAAAAGAAGAGAAAAAAACGAGGCAAAAAAAAGAAGAAAAAACA
AAAACACAAACACACACACACCGGTGGTCTCGTTCTTTCAGCCCGTGCGC
ATCTCTACCATCAACTGACCCACCAGGTATTTTACGTACGTCAAATCTTT
TCTTGCCTGTAATTTCCGAAAAAAAAACAAAAAAAAAAACTCGATTTTCG
AAATTCCAAGAGCAAAAAAGTCATATTTCCGCCTACAATATTCTTCCTCA
ATTCCTATTTCAATTTCTTTTTTCGATTTTCCCGATATAATTACAGCGTG
CTATCGGAAGTAGGGGGGAAAAAGAAGAGAAAAAAACGAGGCAAAAAAAA
GAAGAAAAAACAAAAACACAAACACACACACACCGGTGGTCTCGTTCTTT
CAGCCCGTGCGCATCTCTACCATCAACTGACCCACCAGGTATTTTACGTA
CGTCAAATCTTTTCTTGCCTGTAA
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