prot_H-paniculata_contig576.13335.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig576.13335.1
Unique Nameprot_H-paniculata_contig576.13335.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length309
Homology
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: D7G584_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G584_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.380e-32
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0
Query:   40 MLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRKGAKREGNGYPQ 123
            MLEPDIETMLADCGPIKRIDLIKT D ET  K+SRGFGFV+FALE+DA KAV  IH KRVMGR +SCEIAL+KGAKREGNG  Q
Sbjct:    1 MLEPDIETMLADCGPIKRIDLIKTTDAETGAKRSRGFGFVTFALESDATKAVSIIHRKRVMGREVSCEIALKKGAKREGNGREQ 84          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: A0A835ZCM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.660e-22
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 0
Query:   26 QKPSQVFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRKGAKRE 117
            Q  SQVF+RNLP   LEPDIET+  + GPIKRIDLIK+M      K S+GFGFV FAL+ADAA A   ++G++V G+ IS EIA++KGAKRE
Sbjct:   26 QNLSQVFVRNLPETFLEPDIETLFGEHGPIKRIDLIKSM--HDGAKLSKGFGFVRFALQADAAAAAAALNGRQVQGKAISVEIAMKKGAKRE 115          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: A0A7S1U6V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6V6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.530e-13
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 0
Query:   31 VFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRK 112
            VF+R LP +  E  +  + +D GP+KR+DLI    R+ + +QS+GFGFV FA+  DA +A + + G+R  GR I  EIA +K
Sbjct:   10 VFVRQLPFDWTEEQVMQLFSDSGPVKRVDLI----RDAKTRQSKGFGFVRFAMAPDARRAAQDLDGQRKGGRTIRVEIASKK 87          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: D0P1L6_PHYIT (RRM domain-containing protein (Fragment) n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P1L6_PHYIT)

HSP 1 Score: 72.0 bits (175), Expect = 4.470e-12
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 0
Query:   29 SQVFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRKGAKREGNGYPQGQLP 127
            + VF+RNLP  + + ++E + ++ GP+++ID+IK   +      +RGF FV FA+E+DAA AVE ++     GR +  + A+ KG +R   G P  + P
Sbjct:    2 ASVFVRNLPFGVTQEELEHVFSEIGPVRKIDVIKDKGKRKSEMLTRGFAFVKFAVESDAAVAVEKLNKTDFQGRKMLIDYAMEKGKRR---GLPGKEKP 97          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: A0A484DUV7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUV7_BRELC)

HSP 1 Score: 77.0 bits (188), Expect = 6.250e-12
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 0
Query:   29 SQVFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRKGAKR 116
            + VF+RNLP  + + ++E + +D GP+K+ID+IK   +      +RGF FV FA+E+DAA AVE ++ K   GR +  + A+ KG +R
Sbjct:    2 ASVFVRNLPFGVTQEELEQVFSDIGPVKKIDVIKDKGKRRSELLTRGFAFVKFAVESDAAMAVEKLNKKDFQGRKMLIDYAMEKGKRR 89          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: A0A3R7GCY2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GCY2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.750e-11
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0
Query:   29 SQVFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRKGAKREGN 119
            + VF+RNLP  + + ++E +  D GP+K+ID+IK   +      +RGF FV FA+E+DAA AV+ ++     GR +  + A+ KG KR GN
Sbjct:    2 ASVFVRNLPFGVTQEELEHVFGDIGPVKKIDVIKDKGKRKSEMLTRGFAFVKFAVESDAAVAVKKLNKSEFQGRKMLIDFAMEKG-KRRGN 91          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: M4BXX7_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXX7_HYAAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.690e-11
Identity = 36/90 (40.00%), Postives = 59/90 (65.56%), Query Frame = 0
Query:   29 SQVFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRKGAKREG 118
            + +F+RNLP  + + ++E + +D GP+K+ID+IK   +      +RGF FV FA+E+DAA A+ET++     GR +  + A+ KG KR+G
Sbjct:    2 ASIFVRNLPFGVTQEELEKVFSDVGPVKKIDIIKDKGKRRDEILTRGFAFVKFAVESDAAVAIETLNKADFQGRKMLIDYAMEKG-KRKG 90          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: A0A7S4F0N5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F0N5_CHRCT)

HSP 1 Score: 72.4 bits (176), Expect = 1.010e-10
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 0
Query:   25 AQKPSQVFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISC----------EIALRKGAKR 116
            A + S VF+RNLP ++ +P++E   A  GP+ R  ++    R+ R ++ RGFGFVSF L  DA +A   +HGK + GR I+           E+A+ KG K+
Sbjct:   22 AAEKSSVFVRNLPYDLSDPELEDHFAAIGPVTRAFVV----RDKRTREGRGFGFVSFVLPDDACRAAAELHGKLLKGRKITVDLEKSRHEAQEVAVAKGKKK 119          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: G5A277_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G5A277_PHYSP)

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-10
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 0
Query:   29 SQVFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRKGAKR 116
            + VF+RNLP  + + ++E + ++ GP+K+ID+IK   +      +RGF FV FA+E+DAA AVE ++     GR +  + A+ KG +R
Sbjct:    2 ASVFVRNLPFGVTQEELEHVFSEIGPVKKIDVIKDKGKRKSEMLTRGFAFVKFAVESDAAVAVEKLNKTDFQGRKMLIDYAMEKGKRR 89          
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Match: W2HGW7_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2HGW7_PHYPR)

HSP 1 Score: 72.0 bits (175), Expect = 2.870e-10
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 0
Query:   29 SQVFLRNLPLEMLEPDIETMLADCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVMGRVISCEIALRKGAKR 116
            + VF+RNLP  + + ++E + ++ GP+K+ID+IK   +      +RGF FV FA+E+DAA AVE ++     GR +  + A+ KG +R
Sbjct:    2 ASVFVRNLPFGVTQEELEHVFSEIGPVKKIDVIKDKGKRKSEILTRGFAFVKFAVESDAAVAVEKLNKTDFQGRKMLIDYAMEKGKRR 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig576.13335.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G584_ECTSI1.380e-3280.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCM5_9STRA2.660e-2260.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U6V6_9STRA4.530e-1343.90Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D0P1L6_PHYIT4.470e-1236.36RRM domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A484DUV7_BRELC6.250e-1240.91Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3R7GCY2_9STRA2.750e-1140.66Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
M4BXX7_HYAAE3.690e-1140.00Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]
A0A7S4F0N5_CHRCT1.010e-1038.24Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
G5A277_PHYSP1.600e-1038.64Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
W2HGW7_PHYPR2.870e-1038.64Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 247..281
NoneNo IPR availablePANTHERPTHR10352:SF0EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Gcoord: 23..166
NoneNo IPR availablePANTHERPTHR10352EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Gcoord: 23..166
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 30..107
e-value: 7.9E-17
score: 71.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 31..104
e-value: 1.1E-14
score: 54.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 29..111
score: 15.272
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..119
e-value: 1.2E-20
score: 76.1
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 27..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig576contigH-paniculata_contig576:24084..27831 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig576.13335.1mRNA_H-paniculata_contig576.13335.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig576 24053..27831 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig576.13335.1 ID=prot_H-paniculata_contig576.13335.1|Name=mRNA_H-paniculata_contig576.13335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MAKRKANDGAGGNSSCEVPRGGQQAQKPSQVFLRNLPLEMLEPDIETMLA
DCGPIKRIDLIKTMDRETRVKQSRGFGFVSFALEADAAKAVETIHGKRVM
GRVISCEIALRKGAKREGNGYPQGQLPQSQSTAAGQAAPGNTYGGSSTTA
GNKPPGPTSELAAATQPAPEAEAEKVERTKKKKQNGKKSPQDATCDAISE
AGNKPSAKAKGSAAVVRIEMVAAASAGSVGGVEAGGAEEGLSKKALRKAA
RKEMKKEIKRKAKERAKMKKEAQALEDADANKAAAGAKTAPDAAEEGEGA
GGGENSRNA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf