mRNA_H-paniculata_contig57596.13333.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57596.13333.1
Unique NamemRNA_H-paniculata_contig57596.13333.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57596.13333.1 vs. uniprot
Match: A0A6D2JUM8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JUM8_9BRAS)

HSP 1 Score: 50.4 bits (119), Expect = 5.520e-5
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:   31 PVALTNQNPTINNGNMWVSDSGASNHMTYDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATL-EVSYLPELNFNLFSL 306
            P A     PT N  N WV DSGA++H+T DLS +  L +P  G + V + +G  L +   G   L    T   P TL +V Y+P+L  NL S+
Sbjct:  100 PRANLASTPTYN-ANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISV 187
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BLAST of mRNA_H-paniculata_contig57596.13333.1 vs. uniprot
Match: A0A6D2KMT9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT9_9BRAS)

HSP 1 Score: 50.4 bits (119), Expect = 5.950e-5
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:   31 PVALTNQNPTINNGNMWVSDSGASNHMTYDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATL-EVSYLPELNFNLFSL 306
            P A     PT N  N WV DSGA++H+T DLS +  L +P  G + V + +G  L +   G   L    T   P TL +V Y+P+L  NL S+
Sbjct:  318 PRANLASTPTYN-ANNWVMDSGATHHLTTDLSNL-SLHQPYLGGEEVTIADGTNLHISHTGSSQL---PTLSKPLTLTDVLYVPDLKKNLISV 405
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BLAST of mRNA_H-paniculata_contig57596.13333.1 vs. uniprot
Match: A0A5N5J6G7_9ROSI (Uncharacterized protein n=1 Tax=Salix brachista TaxID=2182728 RepID=A0A5N5J6G7_9ROSI)

HSP 1 Score: 50.1 bits (118), Expect = 7.800e-5
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   34 VALTNQNPTINNGNMWVSDSGASNHMTYDLSKMYDLRKPVAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLFSL 306
            +A +N  PT      W+SDSGASNH+T DLS M D      G+D V +GNG  L +   G   +   S+T   A   + + P +  NL S+
Sbjct:  321 IASSNNQPTT-----WISDSGASNHITSDLSNM-DAHNEYHGKDHVDVGNGAGLTIANTGSSKITCGSSTF--ALKNILHCPSIAANLLSI 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57596.13333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6D2JUM8_9BRAS5.520e-538.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KMT9_9BRAS5.950e-538.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5J6G7_9ROSI7.800e-537.36Uncharacterized protein n=1 Tax=Salix brachista Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57596contigH-paniculata_contig57596:732..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.8335505-CDS-H-paniculata_contig57596:731..10371622930622.8335505-CDS-H-paniculata_contig57596:731..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57596 732..1037 +
1691481376.9046464-CDS-H-paniculata_contig57596:731..10371691481376.9046464-CDS-H-paniculata_contig57596:731..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57596 732..1037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57596.13333.1prot_H-paniculata_contig57596.13333.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57596 732..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57596.13333.1

>prot_H-paniculata_contig57596.13333.1 ID=prot_H-paniculata_contig57596.13333.1|Name=mRNA_H-paniculata_contig57596.13333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
DDTEDGEYGLPVALTNQNPTINNGNMWVSDSGASNHMTYDLSKMYDLRKP
VAGEDVVMLGNGLTLVVDLVGKLDLIFHSTTDVPATLEVSYLPELNFNLF
SL
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mRNA from alignment at H-paniculata_contig57596:732..1038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57596.13333.1 ID=mRNA_H-paniculata_contig57596.13333.1|Name=mRNA_H-paniculata_contig57596.13333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=307bp|location=Sequence derived from alignment at H-paniculata_contig57596:732..1038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGATACAGAGGATGGAGAGTATGGTTTGCCTGTAGCTTTGACGAATCA
AAATCCAACTATTAACAATGGCAATATGTGGGTGTCTGATTCTGGTGCAA
GTAACCACATGACGTATGATCTTTCAAAAATGTATGACCTTCGCAAACCG
GTGGCAGGCGAAGATGTGGTGATGTTGGGGAATGGATTGACTCTGGTGGT
AGATTTGGTGGGAAAGTTGGATTTGATTTTTCATTCCACTACCGATGTGC
CTGCCACACTTGAAGTATCATACTTACCGGAGTTGAACTTCAACCTTTTT
TCCCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig57596:732..1038+

>mRNA_H-paniculata_contig57596.13333.1 ID=mRNA_H-paniculata_contig57596.13333.1|Name=mRNA_H-paniculata_contig57596.13333.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig57596:732..1038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGATACAGAGGATGGAGAGTATGGTTTGCCTGTAGCTTTGACGAATCA
AAATCCAACTATTAACAATGGCAATATGTGGGTGTCTGATTCTGGTGCAA
GTAACCACATGACGTATGATCTTTCAAAAATGTATGACCTTCGCAAACCG
GTGGCAGGCGAAGATGTGGTGATGTTGGGGAATGGATTGACTCTGGTGGT
AGATTTGGTGGGAAAGTTGGATTTGATTTTTCATTCCACTACCGATGTGC
CTGCCACACTTGAAGTATCATACTTACCGGAGTTGAACTTCAACCTTTTT
TCCCTTGATGATACAGAGGATGGAGAGTATGGTTTGCCTGTAGCTTTGAC
GAATCAAAATCCAACTATTAACAATGGCAATATGTGGGTGTCTGATTCTG
GTGCAAGTAACCACATGACGTATGATCTTTCAAAAATGTATGACCTTCGC
AAACCGGTGGCAGGCGAAGATGTGGTGATGTTGGGGAATGGATTGACTCT
GGTGGTAGATTTGGTGGGAAAGTTGGATTTGATTTTTCATTCCACTACCG
ATGTGCCTGCCACACTTGAAGTATCATACTTACCGGAGTTGAACTTCAAC
CTTTTTTCCCTT
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