mRNA_H-paniculata_contig5759.13332.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5759.13332.1
Unique NamemRNA_H-paniculata_contig5759.13332.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A8F0JYI7_9PHAE (NmrA domain-containing protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYI7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.540e-30
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A1L2F1K8_9PHAE (Ycf39 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1K8_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.850e-29
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKR ANFLKEWGAELVYGDL LPETL
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELVYGDLTLPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A2R4QQ19_9PHAE (NmrA domain-containing protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ19_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.220e-29
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKR ANFLKEWGAEL+YGDL LPETL
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELIYGDLTLPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A0S0GA69_COSCS (NmrA domain-containing protein n=35 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GA69_COSCS)

HSP 1 Score: 114 bits (285), Expect = 7.610e-29
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKR ANFLKEWGAELVYGDL +PETL
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELVYGDLTIPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A8E6D5V0_9PHAE (NmrA domain-containing protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5V0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.610e-29
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKR ANFLKEWGAE+VYGDL LPETL
Sbjct:    1 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAEIVYGDLTLPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A8F0FB09_9PHAE (NmrA domain-containing protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB09_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.500e-28
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLLI GGTGTLGRQIVRKALENGFQVRCIVRNKR ANFLKEWGAELVYGDL LPETL
Sbjct:    1 MTLLIFGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELVYGDLTLPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A7S6UA30_9STRA (Ycf39 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA30_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.580e-27
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLLI+GGTGTLGRQIVRKALENGF VRCIVRNKR ANFL+EWGAELVYGDL LPETL
Sbjct:    1 MTLLIIGGTGTLGRQIVRKALENGFHVRCIVRNKRAANFLQEWGAELVYGDLTLPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: B7T1Z0_VAULI (Isoflavone reductase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Z0_VAULI)

HSP 1 Score: 107 bits (268), Expect = 2.420e-26
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLL++GGTGTLGRQIVRKAL+NGFQVRCIVRNKR A FL+EWGAELVYGDL +PETL
Sbjct:    1 MTLLVVGGTGTLGRQIVRKALDNGFQVRCIVRNKRAAKFLQEWGAELVYGDLTIPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A2I4Q2M3_9PHAE (NmrA domain-containing protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.550e-26
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 3 
Query:  102 MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            MTLLILGGTG LGRQIVRKALENGF+VRCIVRNK  ANFLKEWGAELVYGDL +PETL
Sbjct:    1 MTLLILGGTGMLGRQIVRKALENGFEVRCIVRNKTSANFLKEWGAELVYGDLTIPETL 58
[Close]
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Match: A0A7U1AQL7_9PHAE (NmrA domain-containing protein n=3 Tax=Laminariales TaxID=2886 RepID=A0A7U1AQL7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 8.760e-26
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 3 
Query:  114 ILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYGDLVLPETL 275
            +LGGTGTLGRQIVRKALENGFQVRCIVRNKR ANFLKEWGAELVYGDL +PETL
Sbjct:    1 MLGGTGTLGRQIVRKALENGFQVRCIVRNKRAANFLKEWGAELVYGDLTIPETL 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5759.13332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JYI7_9PHAE2.540e-30100.00NmrA domain-containing protein n=1 Tax=Protohalopt... [more]
A0A1L2F1K8_9PHAE3.850e-2996.55Ycf39 n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L... [more]
A0A2R4QQ19_9PHAE5.220e-2994.83NmrA domain-containing protein n=3 Tax=Fucaceae Ta... [more]
A0A0S0GA69_COSCS7.610e-2994.83NmrA domain-containing protein n=35 Tax=Phaeophyce... [more]
A0A8E6D5V0_9PHAE7.610e-2994.83NmrA domain-containing protein n=1 Tax=Ishige okam... [more]
A0A8F0FB09_9PHAE1.500e-2894.83NmrA domain-containing protein n=1 Tax=Desmarestia... [more]
A0A7S6UA30_9STRA1.580e-2791.38Ycf39 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
B7T1Z0_VAULI2.420e-2686.21Isoflavone reductase n=1 Tax=Vaucheria litorea Tax... [more]
A0A2I4Q2M3_9PHAE2.550e-2689.66NmrA domain-containing protein n=1 Tax=Dictyopteri... [more]
A0A7U1AQL7_9PHAE8.760e-2692.59NmrA domain-containing protein n=3 Tax=Laminariale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5759contigH-paniculata_contig5759:13128..13402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score115.5
Seed ortholog evalue8e-24
Seed eggNOG ortholog61622.XP_010375969.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.NmrA-like family
EggNOG OGs39DP2@33154,3BZYT@33208,COG0702@1,KOG1203@2759
COG Functional cat.G
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size277
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.7735343-UTR-H-paniculata_contig5759:13127..132281622930622.7735343-UTR-H-paniculata_contig5759:13127..13228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5759 13128..13228 +
1691481376.8866894-UTR-H-paniculata_contig5759:13127..132281691481376.8866894-UTR-H-paniculata_contig5759:13127..13228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5759 13128..13228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.7881935-CDS-H-paniculata_contig5759:13228..134021622930622.7881935-CDS-H-paniculata_contig5759:13228..13402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5759 13229..13402 +
1691481376.896685-CDS-H-paniculata_contig5759:13228..134021691481376.896685-CDS-H-paniculata_contig5759:13228..13402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5759 13229..13402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5759.13332.1prot_H-paniculata_contig5759.13332.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5759 13229..13402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5759.13332.1

>prot_H-paniculata_contig5759.13332.1 ID=prot_H-paniculata_contig5759.13332.1|Name=mRNA_H-paniculata_contig5759.13332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MTLLILGGTGTLGRQIVRKALENGFQVRCIVRNKRVANFLKEWGAELVYG
DLVLPETL
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mRNA from alignment at H-paniculata_contig5759:13128..13402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5759.13332.1 ID=mRNA_H-paniculata_contig5759.13332.1|Name=mRNA_H-paniculata_contig5759.13332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=275bp|location=Sequence derived from alignment at H-paniculata_contig5759:13128..13402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATAGTTTTTACTACTTAAAATTTTTTTATAACTTTCTTTAAATATCAA
CAAATCTGACACAAGTCTTAAAATTAGAAAAATTTATAGTCCAAAAAACT
TATGACACTACTTATTCTTGGAGGGACTGGAACTTTAGGGCGCCAAATTG
TTAGAAAAGCTTTAGAAAATGGATTTCAAGTTCGGTGTATTGTACGTAAT
AAGAGAGTAGCAAATTTTTTAAAAGAATGGGGAGCTGAATTAGTTTATGG
TGATTTAGTTTTGCCTGAAACTTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig5759:13128..13402+

>mRNA_H-paniculata_contig5759.13332.1 ID=mRNA_H-paniculata_contig5759.13332.1|Name=mRNA_H-paniculata_contig5759.13332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig5759:13128..13402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACTACTTATTCTTGGAGGGACTGGAACTTTAGGGCGCCAAATTGT
TAGAAAAGCTTTAGAAAATGGATTTCAAGTTCGGTGTATTGTACGTAATA
AGAGAGTAGCAAATTTTTTAAAAGAATGGGGAGCTGAATTAGTTTATGGT
GATTTAGTTTTGCCTGAAACTTTAATGACACTACTTATTCTTGGAGGGAC
TGGAACTTTAGGGCGCCAAATTGTTAGAAAAGCTTTAGAAAATGGATTTC
AAGTTCGGTGTATTGTACGTAATAAGAGAGTAGCAAATTTTTTAAAAGAA
TGGGGAGCTGAATTAGTTTATGGTGATTTAGTTTTGCCTGAAACTTTA
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