mRNA_H-paniculata_contig5758.13329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5758.13329.1
Unique NamemRNA_H-paniculata_contig5758.13329.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5758.13329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5758contigH-paniculata_contig5758:7697..8464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size731
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5758.13329.1prot_H-paniculata_contig5758.13329.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5758 7844..8285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.1802487-UTR-H-paniculata_contig5758:7696..78431622930622.1802487-UTR-H-paniculata_contig5758:7696..7843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5758 7697..7843 +
1691481376.633291-UTR-H-paniculata_contig5758:7696..78431691481376.633291-UTR-H-paniculata_contig5758:7696..7843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5758 7697..7843 +
1622930622.2438061-UTR-H-paniculata_contig5758:8285..84641622930622.2438061-UTR-H-paniculata_contig5758:8285..8464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5758 8286..8464 +
1691481376.6613479-UTR-H-paniculata_contig5758:8285..84641691481376.6613479-UTR-H-paniculata_contig5758:8285..8464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5758 8286..8464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930622.205146-CDS-H-paniculata_contig5758:7843..79141622930622.205146-CDS-H-paniculata_contig5758:7843..7914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5758 7844..7914 +
1691481376.6425297-CDS-H-paniculata_contig5758:7843..79141691481376.6425297-CDS-H-paniculata_contig5758:7843..7914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5758 7844..7914 +
1622930622.2262878-CDS-H-paniculata_contig5758:7951..82851622930622.2262878-CDS-H-paniculata_contig5758:7951..8285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5758 7952..8285 +
1691481376.6518514-CDS-H-paniculata_contig5758:7951..82851691481376.6518514-CDS-H-paniculata_contig5758:7951..8285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5758 7952..8285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5758.13329.1

>prot_H-paniculata_contig5758.13329.1 ID=prot_H-paniculata_contig5758.13329.1|Name=mRNA_H-paniculata_contig5758.13329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MVFVIFRQSRLHSNTSSTTSKRPSRVGMHEVQIQKPQHTLLYPWRDHLSA
QAVRTTTPLYGSAVTATNTCVITRPCCIEMCARNEAPRTFRLRRSTSTST
GPWCVSVFVCPSLHRLHCTVLSVVCWTLCGKMCK*
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mRNA from alignment at H-paniculata_contig5758:7697..8464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5758.13329.1 ID=mRNA_H-paniculata_contig5758.13329.1|Name=mRNA_H-paniculata_contig5758.13329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=768bp|location=Sequence derived from alignment at H-paniculata_contig5758:7697..8464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCCCCAGCCAGCACCGCATTTTCCCAGCAAATCGAGTATGTATGTACA
TCTCTACAGTACTGACCTTAACCCTAAGAGTGCGAGCCTTTCGTATATAT
ATGTTCACGTTCCCTTAGACCGTATCTTATGGCGTTGGAAATAAGAGATG
GTTTTTGTGATTTTTAGGCAATCACGCCTCCATTCTAACACTTCCAGCAC
CACGTCGAAGAGGCCGTCGTATGAGAATGAGAAATGGTGTTTGGATTTTA
TGTAGAAGAGTCGGCATGCATGAAGTTCAAATTCAAAAACCACAACACAC
GTTACTGTACCCCTGGCGAGACCATCTCTCGGCACAAGCCGTTCGCACCA
CAACTCCCTTGTATGGGAGCGCTGTCACTGCAACAAACACATGCGTAATA
ACACGTCCATGTTGCATCGAGATGTGTGCACGAAACGAGGCACCGCGGAC
CTTTCGCCTTCGTCGCAGCACTAGCACTAGCACGGGTCCGTGGTGTGTGA
GTGTATTTGTGTGTCCTTCGTTGCATAGGTTGCACTGTACTGTACTATCG
GTTGTCTGTTGGACTCTCTGCGGCAAAATGTGCAAATAAAGCCTGACGTT
CTATACAACGCCAAATCCCATCGCTCTGAAAACTTGTGATATTTGGGCTC
CATTTCCCACGAGATTGGGAGGTCGGATGGGAAAATGATTTTTGAGCTCG
TGGGAAATGGGCCATTTTTAACGCCATAAGGTGGATTTTTCGATAGGAAA
GAGAAATGGGCGGACCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5758:7697..8464+

>mRNA_H-paniculata_contig5758.13329.1 ID=mRNA_H-paniculata_contig5758.13329.1|Name=mRNA_H-paniculata_contig5758.13329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig5758:7697..8464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTTGTGATTTTTAGGCAATCACGCCTCCATTCTAACACTTCCAG
CACCACGTCGAAGAGGCCGTCATGGTTTTTGTGATTTTTAGGCAATCACG
CCTCCATTCTAACACTTCCAGCACCACGTCGAAGAGGCCGTCAAGAGTCG
GCATGCATGAAGTTCAAATTCAAAAACCACAACACACGTTACTGTACCCC
TGGCGAGACCATCTCTCGGCACAAGCCGTTCGCACCACAACTCCCTTGTA
TGGGAGCGCTGTCACTGCAACAAACACATGCGTAATAACACGTCCATGTT
GCATCGAGATGTGTGCACGAAACGAGGCACCGCGGACCTTTCGCCTTCGT
CGCAGCACTAGCACTAGCACGGGTCCGTGGTGTGTGAGTGTATTTGTGTG
TCCTTCGTTGCATAGGTTGCACTGTACTGTACTATCGGTTGTCTGTTGGA
CTCTCTGCGGCAAAATGTGCAAATAAAAGAGTCGGCATGCATGAAGTTCA
AATTCAAAAACCACAACACACGTTACTGTACCCCTGGCGAGACCATCTCT
CGGCACAAGCCGTTCGCACCACAACTCCCTTGTATGGGAGCGCTGTCACT
GCAACAAACACATGCGTAATAACACGTCCATGTTGCATCGAGATGTGTGC
ACGAAACGAGGCACCGCGGACCTTTCGCCTTCGTCGCAGCACTAGCACTA
GCACGGGTCCGTGGTGTGTGAGTGTATTTGTGTGTCCTTCGTTGCATAGG
TTGCACTGTACTGTACTATCGGTTGTCTGTTGGACTCTCTGCGGCAAAAT
GTGCAAATAA
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