mRNA_H-paniculata_contig5757.13327.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ) HSP 1 Score: 232 bits (592), Expect = 2.180e-62 Identity = 183/524 (34.92%), Postives = 260/524 (49.62%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDL---FSTPPVTPAVTRSRAQGEQGSGTNTED-----RTSASQMPPILPTHSRPAASASPLSVLSDGDDGENNGNSKVKD----AEPSVE----DAPSAGTAAPASRGNITKQS---GTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAA----ELEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAGRCEK-VDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEGKLKTSAPDRGRSGNSTEYRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDPCRE 1419
WHG P ++HLRVFGC+ YV R+LDD+ VF+GY++ S +YR+Y+P + V +SR+V FDE A + D E+ F PV P+V + GEQ +GT + T PP P P SV + D G +V+D EP ++ D T P S K ++L ++ +N+TW L LPAG KAI +KW++K DF E A VAR T+R + +LAA E+ MDV +A+LN +EEE +V PP F + V +LR++LYGLRQ+ R WN L +LL +F++S T+S Y+ G++ L+V +YVDDL+I G +K +D FK + QRF M DLG LS G+EV + I + Q +Y ++L+ G + C +P+E +LK S G + TEYR +VGSL Y TRPD+AY+V + ME P E
Sbjct: 733 WHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDE---TATWAWRDPEDAATEEEEFTVDFFVSPVAPSVADA---GEQ-TGTPVQAGVSPVSTGVLSSPPRAPNGE---FCTPPTSVTPETDGGPVRYR-RVQDILSTTEPVLDFDYSDQCLIATEEPTSFVEAEKHECWRRAMVEELRSVEENQTWS---LAELPAGHKAIGLKWVYKLKKDPSGAIVKHKARLVAKGYVQQQGVDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQPPGFDD-KTNASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAVYVRGV--GDSKLIVGVYVDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSYYLGMEVVQKGEG--IFLSQSAYAGKILEKTGMEGCNPTQVPMEARLKLSKEGTGECVDPTEYRSIVGSLRYL-VNTRPDLAYSVGYVSRFMEKPTSE 1236
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: Q7G6A8_ORYSJ (Os10g0130700 protein n=3 Tax=Oryza sativa TaxID=4530 RepID=Q7G6A8_ORYSJ) HSP 1 Score: 221 bits (563), Expect = 1.420e-58 Identity = 170/520 (32.69%), Postives = 255/520 (49.04%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRSRAQGEQGS----GTNTEDRTSASQMPPILPTHSRPAASASPLSVLSDGDDGENNGNSKVKD----AEPSVE----DAPSAGTAAPASRGNITKQ---SGTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAA----ELEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAG-RCEKVDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEGKLKTSAPDRGRSGNSTEYRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDPCRE 1419
WHG P ++HLRVFGC+ YV R+LDD+ VF+GY++ S +YR+Y+P + V +SR+V FDE A + E + F PV V GEQ S G T+ PP +P SP + ++ G + +V+D EP ++ D + P S +Q ++L ++ DN+TW LP G KAI +KW++K DF E A VAR T+R + ++AA E+ MDV +A+LN +EEE +V PP F ++ V RL+++LYGL+Q+ R WN L +L+ F +S T+S Y+ G + L+V +YVDDL+I+G + ++D FK + ++FRM DLG LS G+EV + + + + Q +Y ++L+ G + C +P+E +LK G +ST YR VGSL Y TRPD+AY+V + ME P E
Sbjct: 733 WHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVARRVCVSRDVVFDEAATWAWRDPETEATEEEEFTVDFFVNPVDSVVAD---LGEQASTPVQGGTYPASTATPPSPPEVPAG---VEFCSPPNSVTPGTNEGPIRYRRVQDILSATEPVLDFDYSDQCLLASEEPMSLAEAEQQLCWRQAMQEELKSIEDNQTWS---FAELPVGHKAIGLKWVYKVKKDPSGVVVKHKARLVAKGYVQQQGIDFEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSAFLNGDLEEEVYVVQPPGFIEKGKEGQ-VLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESAVYVRGT--GSSRLIVGVYVDDLIISGAQASEIDFFKEEMKKKFRMSDLGLLSYYLGMEVV--QKDDGVFLSQTAYAAKILEKTGMEGCNSTQVPMEARLKLKRESGGEGVDSTMYRSTVGSLRYL-VNTRPDLAYSVGYVSRFMEKPTSE 1237
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 202 bits (515), Expect = 7.310e-54 Identity = 149/509 (29.27%), Postives = 246/509 (48.33%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRSRAQGEQGSGTNTEDRTSASQMPPILPTHSR--PAASASPLSVLSDGDDGENNGNSKVKDA-EPSVEDAPSAGTAAPASRGNITKQSGTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAAE----LEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAGRC-EKVDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEGKLK-TSAPDRGRSGNSTEYRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDPCRE 1419
W G P + HLR FGC+ Y +R++LD KA V LGY ++ YR+Y+P+N V SR+V+F+E +F ++E G + D T ++ +D+ +++ P R P +++ S KD EP+ G N + Q++ +L ++ WE L LP RKA+ KW+FK D+ ET + V R ++RTV +L+ + L MDV AA+LN +E+E ++K P F ++ +L +SLYGL+QS R WN+ L L F ++ +D C Y+ ++G +VAI+VDD+++AG+ EK+ + K ++++RF++KD+G L + G++V ++ + + I Q +Y ++K YG + C+ + PV+ K SA + N E++ VGSL+Y S+ TRPDI +AV+ A +P E
Sbjct: 7 WTGVKPDVKHLRSFGCIVYAHIPKDERKKLDSKAKKCVPLGYGTETKGYRLYDPQNSRVIYSRDVKFNESEFGI----EKELPGNEFQADKHVTLELS----------NDNDVVVEDDQADNAEINERQPVRERRAPDRFGEWVTIAS-------------KDVVEPTTVSEALCGP-------NAERWHEAMQQEMDSLQEHDVWE---LTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEH-LACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNE 473
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: A0A6S7IKL3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IKL3_PARCT) HSP 1 Score: 203 bits (517), Expect = 3.490e-53 Identity = 160/507 (31.56%), Postives = 243/507 (47.93%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRSRAQGEQGSGTNTEDRTSASQMPPILPTHSRPAASASPLSVLSDGDDGENNGNSKVKDAEPSVEDAPSAGTAAPASRGNITKQSGTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAAE----LEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAGRCE-KVDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEG--KLKTSAPDRGRSGNSTEYRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDPCRE 1419
W + P + HLR FGC AY +R++LD KA + LGY ++ YR+Y+P V SR+V+F+E + QE +E F P + Q + + DR RP A + ++ D E VK+A S + A K +++ +L N W +L LP RKA+ KW+F+ D+ ET + VAR ++RTV +LAA+ L MDV A+LN ++EE ++K P F ++ V RLR+S+YGL++S R WN+ L L F ++T D C Y+ ++EGGE ++A+YVDD+++AG+ + K++E K L+++F+MKD+G L G++V + + I I Q +Y + VL+ +G + + PV KLK A D R + Y+ VG L+Y ST+TRPDIAYAV A DP E
Sbjct: 374 WTSQKPNVKHLREFGCEAYAHVPKDERKKLDSKARKCILLGYGTETKGYRLYDPNRARVFHSRDVQFNESSQEPEVVKVQEPKQNTLVELEFEEPIDVEEPVVNEEPEPQVTRRSERDR--------------RPPAYYGEWATAANHDKNEPR---TVKEALSSPQKA---------------KWVKAMEKEMESLKTNEVW---NLVELPENRKAVGSKWVFRIKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIEKGKEH-LVCRLRRSIYGLKKSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKEADDSQRV-DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEE 841
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: A0A438E2Y0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E2Y0_VITVI) HSP 1 Score: 201 bits (512), Expect = 5.080e-53 Identity = 155/537 (28.86%), Postives = 252/537 (46.93%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRS-----RAQGEQGSGTNTEDRTSASQMP--PILPTHSR-------PAASASPLSVLSDGDDGENNGNSKVKDAEPSVEDAPSAGTAAPASRGNITKQSGTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAA----ELEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAGR-CEKVDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEGKLKTSA---PDRGRSGNSTE---YRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDPCREVHVSAFFVISLL 1455
W G+ DHLRVFGC A+V +R +LD KA +F+GY + YR+Y+P +K V SR+V F E+ D + + + N DL P+ P V + + + + E Q P P+ T R P+ S + D GE +V E N T+ +++ +L +N T+ DL + P G+K ++ KW+F+ DF E + V + S++RTV +AA E+E +DV A+L+ +EEE +++ P F D V +L++SLYGL+Q+ R W + + R+T+D C ++ + G +L+ +YVDD++I G+ K+ + K LS+ F MKDLG ++ GI + RDR +G I + Q +Y+++VL+ + D+ + + P+ G K S+ P N + Y +GSLMYA TRPDIA+AV + M +P +E + +++ L
Sbjct: 51 WTGKEVSYDHLRVFGCRAFVHIPKDERSKLDPKAKQCIFIGYGHEEFGYRLYDPVDKKVVRSRDVVFLEDQTIEDIDKLESAESSTN--DLVDLDPLNPPVVHDIDEEVQTPHDDAAEDDVEPEIEGEQSPQEPLPQTPLRRSTREKQPSRKYSSNEYVMISDQGEPETYQEVLKHE------------------NKTEWLKAMKEEMKSLHENHTY---DLVKPPKGKKILKNKWVFRRKNDGNSSQPRFKARLVVKGFDQRKGVDFDEIFSPVVKMSSIRTVLGIAASMNLEVEQLDVKTAFLHGDLEEEIYMEQPEGFIDKGND-QLVCKLKKSLYGLKQAPRQWYRKFDSFMTEHGYSRTTSDHCVFVKKYPDGNFIILL-LYVDDMLIVGQDMSKISKLKSELSKSFAMKDLGPAKQILGIRIVRDRSHGLIWLSQENYVKKVLERFNMDKAKPVNCPLAGHFKLSSSQCPTSDEEKNEMQKIPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSNPGKEHWAAVKWILRYL 562
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: Q2QYZ3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QYZ3_ORYSJ) HSP 1 Score: 204 bits (518), Expect = 1.120e-52 Identity = 163/526 (30.99%), Postives = 249/526 (47.34%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRSRAQGEQGSGTNTEDRTSASQMPPILPTHSRPAAS-------------ASPLSVLSDGDDGENNGNSKVKDAEPSV--------EDAPSAGTAAPASRGNITKQS---GTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAAE----LEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAG-RCEKVDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEGKLKTSAPDRGRSGNSTEYRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDP 1410
WHG P ++HLRVFGC+ YV R+LDD+ VF+GY++ S +YR+Y+P + V +SR+V FDE F + G +EH+G + FS T V + + + + TED +S S T + SP S S+G D V + + D PAS K+ +++ ++ N TW DL P KAI +KW+FK DF E A VAR T+R + ++AA+ + MDV +A+LN +EE+ +V+ P F + V + +++LYGLRQ+ R W L SL G F +S T++ Y G++ L+V +YVDDL+I+G ++ FK + F M DLG LS G+EV++ + I + Q Y R +L+ G + C +P+E +LK S + G ++TE+R ++GSL Y TRPD+ Y+V + ME+P
Sbjct: 762 WHGRRPTVEHLRVFGCVGYVKTAKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDETTFWS-WSGCEEHEGDADAYVEFSVENYTTPVDVNHSS-DAATSQATEDPSSISPNSVATVTSENALDTQETAVSLPTGIEFCSPPSNASEGTDEAPRRYKTVANTLATTTPILDFDYSDELMMAVEEPASFLEAEKKGCWRKAMIEEMKSIEGNHTWSLSDL---PPSHKAIGLKWVFKVKRDAKGEILKYKARLVAKGYVQQQGVDFVEVFAPVARMETVRLLIAMAAQEGWQVHHMDVKSAFLNGDLEEDVYVQQPLGFVVEGEEGK-VLKPKKALYGLRQAPRAWYAKLDSSLAGLNFVKSATENAVYTRGH--GDSRLVVGVYVDDLIISGPSLSEIIRFKEQMKTLFSMSDLGLLSYYLGMEVKQG--DDGIMMTQAGYARRILEKAGMEGCNPCQVPMEPRLKLSKGEPGECVDATEFRSLIGSLRYL-VNTRPDLCYSVGYVSRFMENP 1276
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: A0A5S6QBM2_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QBM2_TRIMR) HSP 1 Score: 199 bits (505), Expect = 1.440e-51 Identity = 157/511 (30.72%), Postives = 242/511 (47.36%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRSRAQGEQGSGTNTEDRTSASQMPPILPTHSRPAASASPLSVLSDGDDGENNGNSKVKDAEPSVEDAPSAGTAAPASRGNIT--------KQSGTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAA----ELEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAGRCEKVDE-FKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVE-GKLKTSAPDRGRSGNSTEYRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDP 1410
W G+ P L H+R+FG AY Q+RR+ DD+A G+ +GYD + YR+ +P + +SR+VR E+D QE + ++L + + +S +G+ N E+ + + LP+ S++ S+LS N + + S + + P+S +T K +++ +L + WE L +LPAGRK I KW+FK D+ ET A V + T+R + S+AA + DV AYLN + EE +++ PP F S + V RL++S+YGL+QS R WN T L FDR+ D C Y R+ G T V +YVDDL++AG E++ L++ F KDLG +S G+++ R +G + Q S I ++LK G E + + P+E G L T N+ +YR ++GSL+Y +T +RPDIA AV R E P
Sbjct: 173 WTGKRPNLSHIRIFGSKAYSFVPQQKRRKWDDRAMQGILVGYDNATKGYRLLDPVTNRIWISRSVRIIEKDEQYVDFAVQETYMPEGAKELE----LKKQIDKSIEPSSRGAEVNVENIFESPKQE--LPSQEEVEVSSNE-SLLSPAPRRSQRINKGMPPQKLSYK-VHTVEACEPSSWEEVTSLPPCERDKWIAAAKEEMASLKNRDVWE---LVKLPAGRKVISSKWVFKIKRKADGAIDTYKARLVARGFSQRYGEDYDETFAPVVKHETIRMLLSIAAMRSLHVRHFDVKCAYLNGEIHEELYMEQPPGFVQ-SGNENLVLRLKRSIYGLKQSARAWNKKATEVLTSLGFDRANADLCLYTRRESTGGTTY-VLLYVDDLLVAGETEEITRNIGAKLNKHFVTKDLGKVSSYLGMQIERQE-DGAFLLHQHSKIEQLLKKVGMSEAKPMGTPIETGYLSTVNEFSVPLPNNVQYRQVIGSLLYIATVSRPDIALAVGLLCRRTESP 669
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: A0A438E432_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E432_VITVI) HSP 1 Score: 197 bits (500), Expect = 2.200e-50 Identity = 152/537 (28.31%), Postives = 250/537 (46.55%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRS-----RAQGEQGSGTNTEDRTSASQMP--PILPT-------HSRPAASASPLSVLSDGDDGENNGNSKVKDAEPSVEDAPSAGTAAPASRGNITKQSGTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAA----ELEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAGR-CEKVDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEGKLKTSA---PDRGRSGNSTE---YRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDPCREVHVSAFFVISLL 1455
W G+ DHLRVFGC A+V +R +LD KA +F+GY + YR+Y+P +K V SR+V F E+ D + + + N DL P+ P V + + + + E Q P P+ +P+ S + D GE +V E N T+ +++ +L +N T+ DL + P G+K ++ KW+F+ DF E + V + S++RTV +AA E+E +DV A+L+ +EEE +++ P F D V +L++SLYGL+Q+ R W + + R+T D C ++ + G +L+ +YVDD++I G+ K+ + K LS+ F MKDLG ++ GI + R+R +G I + Q +Y+++VL+ + D+ + + P+ G K S+ P N + Y +GSLMYA TRPDIA+AV + M +P +E + +++ L
Sbjct: 504 WTGKEVSYDHLRVFGCRAFVHIPKDERSKLDPKAKQCIFIGYGHEDFGYRLYDPVDKKVVRSRDVVFLEDQTIEDIDKLESAESSTN--DLVDLDPLNPPVVHDIDEEVQTPHDDAAEDDVEPEIEGEQSPQEPLXXXXXXRSTREKQPSKKYSSNEYVMISDQGEPETYQEVLKHE------------------NKTEWLKAMKEEMKSLNENHTY---DLVKPPKGKKILKNKWVFRRKNDGNSSQPRFKARLVVKGFDQRKGVDFDEIFSPVVKMSSIRTVLGIAASMNLEVEQLDVKTAFLHGDLEEEIYMEQPEGFIDKGND-QLVCKLKKSLYGLKQAPRQWYRKFDSFMTEHGYSRTTLDHCVFVKKYPDGNFIILL-LYVDDMLIMGQDMSKISKLKSELSKSFAMKDLGPAKQILGIRIVRNRSHGLIWLSQENYVKKVLERFNMDKAKPVNCPLAGHFKLSSSQCPTSDEEKNEMQKIPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSNPGKEHWAAVKWILRYL 1015
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: A0A392MB72_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MB72_9FABA) HSP 1 Score: 190 bits (483), Expect = 4.020e-50 Identity = 159/532 (29.89%), Postives = 253/532 (47.56%), Query Frame = 1
Query: 1 WHGETPKLDHLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDE-----------------EDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRSRAQGEQGSGTNTEDRTSASQMP----PILPTHSRPAASASPLSVLS-DGDDGENNGNSKVKDAEPSVEDAPSAGTAAPASRGNITKQSGTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAAELEG----MDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAGRCEK-VDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEGKLKTSAPDRGRSGNSTEYRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDPCREVHVSA 1434
W G P +DH RVFGC+A+V R++LD K+ V LG E+S +Y++YNP +K + +SR+V F+E + D E D N ++ P+ VT + A E GS ED + S+ P P H + S DG D N + A + T A++ I K + Q ++ N TWE L LP G KAI +KWIFK D+ E A VAR T+RT+ LAA + +DV +A+L+ + E +V+ + D V +L+++LYGL+Q+ R W + + +F++ + ++ GG+ L+V++YVDDL+ G E+ +++FK+++ ++F M DLG + G+EV+ + + I I Q Y E+LK +G +EC + P+ K ++G++ +ST Y+ M+G LMY TRPD+ ++V AA ME P ++HV+A
Sbjct: 15 WSGIKPSVDHFRVFGCLAHVHIPDVYRKKLDGKSIVCVLLGVSEESKAYKLYNPIDKKIIVSRDVVFEEFKGWNWDKQTDIKPVDITSYGGDDEDSSELDLQNNQDE-----PIMQDVTNNDAN-EAGSSNMDEDSSEESEAGSDDIPARPRHPPGYLRDYVTGIRSIDGQDDIENQVNLQNLAMAMFSPSEDPNTYEEAAKFEIWKHAMESEMQ--SIQANDTWE---LTTLPQGVKAIGVKWIFKTKYNEKGKVEKHKARLVAKGYSQKYGIDYSEVFAPVARWDTIRTILCLAAHRQWCVFQLDVKSAFLHGDLTENVYVEQQLGYHKGGTDQ--VYKLKKALYGLKQAPRAWYSKIESYFNEKKFEKCPHEPTLFVKHGNGGKI-LIVSLYVDDLIYTGNDEELIEDFKNSMKEKFAMTDLGRMKYFLGVEVK--QCDKGIFIGQQKYASEILKRFGMEECNKVCSPIVPGSKLVKDEKGKATDSTLYKKMIGCLMYLLA-TRPDLTFSVCLAARYMERPT-DLHVAA 528
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT) HSP 1 Score: 191 bits (486), Expect = 6.820e-50 Identity = 157/498 (31.53%), Postives = 238/498 (47.79%), Query Frame = 1
Query: 28 HLRVFGCMAYVLFQSQQRRQLDDKAWAGVFLGYDEDSPSYRIYNPENKSV*LSRNVRFDEEDFAADHHGQQEHDGTQNMEDLFSTPPVTPAVTRSRAQGEQGSGTNTEDRTSASQMPPILPTHSRPAASASPLSVLSDGDDGENNGNSKVKDAEPSVEDAPSAGTAAPASRGNITKQSGTEAQQLGALVDNRTWESEDLGRLPAGRKAIRMKWIFK---------------------------DFFETSAAVARTSTLRTVFSLAAE----LEGMDVDAAYLNAPVEEEPFVKLPPEFSPFSRDIPFVRRLRQSLYGLRQSGRNWNNTLTISLLG*EFDRSTTDSCSYISRDEGGETNLLVAIYVDDLVIAGRCE-KVDEFKHNLSQRFRMKDLGSLSRVWGIEVRRDRPNGTITILQGSYIREVLKIYGFDECRGIPIPVEG--KLKTSAPDRGRSGNSTEYRGMVGSLMYASTRTRPDIAYAVHQAAPRMEDPCRE 1419
HLRVFGC AY +R++LD KA + LGY ++ YR+Y+P V SR+V+F+E + QE +E F P + Q + + DR RP A + ++ D E VK+A S + TK +++ +L N W +L LP RKA+ KW+F+ D+ ET + VAR ++RTV +LAA+ L MDV A+LN ++EE ++K P F ++ V RLR+S+ GL+QS R WN+ L L F ++T D C Y+ ++EGGE ++A+YVDD+++AG+ + K++E K L+++F+MKD+G G++V + + I I Q +Y + VL+ +G + + PV KLK +A D R + Y+ VG L+Y ST+TRPDIAYAV A P E
Sbjct: 1 HLRVFGCEAYAHVPKDERKKLDSKARKCILLGYGTETKGYRLYDPNRARVFHSRDVQFNESSQEPEVVKVQEPKQNTLVELEFEEPIDVEEPVVNEEPEPQVTRRSERDR--------------RPPAYYGEWATAANHDKNEPR---TVKEALSSPQK---------------TKWVKAMEKEMESLKTNEVW---NLVELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKEH-LVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRV-DQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEE 459 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5757.13327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5757.13327.1 >prot_H-paniculata_contig5757.13327.1 ID=prot_H-paniculata_contig5757.13327.1|Name=mRNA_H-paniculata_contig5757.13327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp MEDLFSTPPVTPAVTRSRAQGEQGSGTNTEDRTSASQMPPILPTHSRPAAback to top mRNA from alignment at H-paniculata_contig5757:10828..12730+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5757.13327.1 ID=mRNA_H-paniculata_contig5757.13327.1|Name=mRNA_H-paniculata_contig5757.13327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1903bp|location=Sequence derived from alignment at H-paniculata_contig5757:10828..12730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5757:10828..12730+ >mRNA_H-paniculata_contig5757.13327.1 ID=mRNA_H-paniculata_contig5757.13327.1|Name=mRNA_H-paniculata_contig5757.13327.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig5757:10828..12730+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |