mRNA_H-paniculata_contig57563.13325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57563.13325.1
Unique NamemRNA_H-paniculata_contig57563.13325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig57563.13325.1 vs. uniprot
Match: W4GT85_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GT85_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.240e-7
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 1 
Query:    1 PVPVDGCEEFWVADSGASALMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK--MLVWMKDRDEMHKFSLSRVA-----HVPGLDTNLFSLQVVVKQGLTV 288
            P       E W+ DS AS L TP+ +    Y  C+ L +TV NG TLP+ GYG   MLV M  RD++       +      H   L  NLFS++      +TV
Sbjct:  339 PTKFPALREHWIVDSSASTLCTPNRDYFSRYIPCA-LSLTVGNGATLPVVGYGSISMLVDMSPRDQVDDIRTCTLRLDFGLHCHELQFNLFSVRQASDDNITV 440
[Close]
BLAST of mRNA_H-paniculata_contig57563.13325.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.900e-6
Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   31 WVADSGASALMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWMKDRDEMHKFSLSRVAHVPGLDTNLFSLQVVVKQGLTV 288
            W+ DSGASA MT        +E     ++T+A+G+   I G G  +L  +   DE+ +  +S V +VPGL TNL S++ + ++ L V
Sbjct:  275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDV 361
[Close]
BLAST of mRNA_H-paniculata_contig57563.13325.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 52.0 bits (123), Expect = 1.380e-5
Identity = 29/87 (33.33%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:   31 WVADSGASALMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRDEMHKFSLSRVAHVPGLDTNLFSLQVVVKQGLTV 288
            W+ DSGAS   TP   ++ DY+T    + V  A G+   I G G + + ++ +      +L +V HVPG+D+NL S  V++ +G  +
Sbjct:  306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKGFEI 391
[Close]
BLAST of mRNA_H-paniculata_contig57563.13325.1 vs. uniprot
Match: A0A6G0X790_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X790_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.850e-5
Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:    1 PVPVDGCEEFWVADSGASALMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKM 165
            P P +     W+ DSGA+   TP  E    Y+ CS L +TV +G TLP++GYG +
Sbjct:  812 PKPPNPLRSHWIVDSGATCSCTPHIEYFTSYQPCS-LSITVGDGATLPVKGYGPL 865
[Close]
BLAST of mRNA_H-paniculata_contig57563.13325.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.050e-5
Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:    1 PVPVDGCEEFWVADSGASALMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKM 165
            P P +     W+ DSGA+   TP  E    Y+ CS L +TV +G TLP++GYG +
Sbjct:  486 PKPPNPLRSHWIVDSGATCSCTPHIEYFTSYQPCS-LSITVGDGATLPVKGYGPL 539
[Close]
BLAST of mRNA_H-paniculata_contig57563.13325.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 9.090e-5
Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:    1 PVPVDGCEEFWVADSGASALMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKM 165
            P P +     W+ DSGA+   TP  E    Y+ CS L +TV +G TLP++GYG +
Sbjct:  822 PKPPNPLRSHWIVDSGATCSCTPHIEYFTSYQPCS-LSITVGDGATLPVKGYGPL 875
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57563.13325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
W4GT85_9STRA4.240e-735.92Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
Q967L5_AEDAE2.900e-635.63Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A535F6U2_9CHLR1.380e-533.33DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6G0X790_9STRA8.850e-541.82Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A6G0X7I6_9STRA9.050e-541.82Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0W780_9STRA9.090e-541.82Integrase catalytic domain-containing protein n=3 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57563contigH-paniculata_contig57563:480..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.948514-CDS-H-paniculata_contig57563:479..7671622930621.948514-CDS-H-paniculata_contig57563:479..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57563 480..767 +
1691481376.5419414-CDS-H-paniculata_contig57563:479..7671691481376.5419414-CDS-H-paniculata_contig57563:479..767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57563 480..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57563.13325.1prot_H-paniculata_contig57563.13325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57563 480..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57563.13325.1

>prot_H-paniculata_contig57563.13325.1 ID=prot_H-paniculata_contig57563.13325.1|Name=mRNA_H-paniculata_contig57563.13325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
PVPVDGCEEFWVADSGASALMTPSNELMFDYETCSNLFVTVANGETLPIE
GYGKMLVWMKDRDEMHKFSLSRVAHVPGLDTNLFSLQVVVKQGLTV
back to top

mRNA from alignment at H-paniculata_contig57563:480..767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57563.13325.1 ID=mRNA_H-paniculata_contig57563.13325.1|Name=mRNA_H-paniculata_contig57563.13325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at H-paniculata_contig57563:480..767+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGC
TTCGGCCCTCATGACTCCGTCTAACGAGTTGATGTTTGATTACGAAACCT
GCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAG
GGATATGGTAAGATGTTGGTATGGATGAAGGATCGGGACGAGATGCACAA
ATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACGAATTTGT
TTTCCCTACAGGTTGTAGTGAAGCAGGGGCTAACTGTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig57563:480..767+

>mRNA_H-paniculata_contig57563.13325.1 ID=mRNA_H-paniculata_contig57563.13325.1|Name=mRNA_H-paniculata_contig57563.13325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig57563:480..767+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGC
TTCGGCCCTCATGACTCCGTCTAACGAGTTGATGTTTGATTACGAAACCT
GCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAG
GGATATGGTAAGATGTTGGTATGGATGAAGGATCGGGACGAGATGCACAA
ATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACGAATTTGT
TTTCCCTACAGGTTGTAGTGAAGCAGGGGCTAACTGTCCCAGTACCAGTA
GATGGTTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCTTCGGCCCTCAT
GACTCCGTCTAACGAGTTGATGTTTGATTACGAAACCTGCAGTAATTTGT
TTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAG
ATGTTGGTATGGATGAAGGATCGGGACGAGATGCACAAATTCAGCTTGAG
TCGTGTAGCGCATGTTCCGGGCCTGGACACGAATTTGTTTTCCCTACAGG
TTGTAGTGAAGCAGGGGCTAACTGTC
back to top