mRNA_H-paniculata_contig5755.13323.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5755.13323.1
Unique NamemRNA_H-paniculata_contig5755.13323.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: D7FMQ4_ECTSI (Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ4_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 2.230e-128
Identity = 189/197 (95.94%), Postives = 192/197 (97.46%), Query Frame = 1 
Query:   31 ENGSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSN-ANLIDIKV 618
            ENG  PAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERG+DV+MMLVGNKTDLKERRQVSVEEG DRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAP TSN ANLIDIK+
Sbjct:    6 ENGGAPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGNDVVMMLVGNKTDLKERRQVSVEEGEDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPATSNNANLIDIKL 202
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BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: A0A6V1RZC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RZC8_HETAK)

HSP 1 Score: 341 bits (875), Expect = 5.350e-117
Identity = 170/197 (86.29%), Postives = 183/197 (92.89%), Query Frame = 1 
Query:   28 RENGSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNANLIDIKV 618
            R    TP VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVR+ERG+DV++MLVGNKTDL +RRQVS EEGGDRA+AEG++F E SAK G N+K +FR+LA ALPGME+AP TSNANLIDIK+
Sbjct:   29 RAASMTPGVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRSERGNDVVIMLVGNKTDLADRRQVSAEEGGDRAQAEGVIFAEASAKSGANVKGVFRQLAAALPGMESAPTTSNANLIDIKL 225
[Close]
BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: A0A7S2UZT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZT5_9STRA)

HSP 1 Score: 333 bits (853), Expect = 6.180e-114
Identity = 167/199 (83.92%), Postives = 183/199 (91.96%), Query Frame = 1 
Query:   25 DRENGSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGME-TAPVTSNANLIDIKV 618
            D ++  +P VPQI PLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMY+ DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKW+EDVRNERG+DV++MLVGNKTDL +RRQVSVEEG +RAK+E IMFIETSAK GYN+KALF KLATALPGM+ T P+  N N+IDIK+
Sbjct:    9 DGQSLVSPGVPQITPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYMPDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWVEDVRNERGNDVVIMLVGNKTDLSDRRQVSVEEGEERAKSEQIMFIETSAKAGYNVKALFNKLATALPGMDATQPLAPNTNMIDIKL 207
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BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: A0A836CM24_9STRA (Rab6, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM24_9STRA)

HSP 1 Score: 330 bits (847), Expect = 4.110e-113
Identity = 163/189 (86.24%), Postives = 181/189 (95.77%), Query Frame = 1 
Query:   52 VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNANLIDIKV 618
            +PQ+APLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLN+S+WI+DVR ERG++V++MLVGNKTDL +RRQVSVEEG D+AK EG+M IETSAK GYNIK LFRKLATALPGME+AP T+++NLIDIK+
Sbjct:   16 IPQVAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNSSEWIKDVRAERGNEVVIMLVGNKTDLADRRQVSVEEGEDKAKKEGVMHIETSAKAGYNIKPLFRKLATALPGMESAPSTASSNLIDIKL 204
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BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: K3WVM7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM7_GLOUD)

HSP 1 Score: 326 bits (835), Expect = 4.820e-111
Identity = 160/193 (82.90%), Postives = 176/193 (91.19%), Query Frame = 1 
Query:   40 STPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNANLIDIKV 618
            +T +VPQIAPLAKYKLVFLGDQ VGKTS+ITRFMYD FD  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKWIEDVR ERG DV++MLVGNKTD+ ERRQVS+EEG D+AK E +MFIETSAK GYNIKALFRKLAT LPGME   ++ ++NLIDIK+
Sbjct:   27 NTVSVPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISERRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTAISGDSNLIDIKL 219
[Close]
BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: A0A0P1AX93_PLAHL (Rab family gtpase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX93_PLAHL)

HSP 1 Score: 323 bits (827), Expect = 1.050e-109
Identity = 158/189 (83.60%), Postives = 173/189 (91.53%), Query Frame = 1 
Query:   52 VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNANLIDIKV 618
            VPQIAPLAKYKLVFLGDQ VGKTS+ITRFMYD FD  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKWIEDVR ERG DV++MLVGNKTD+ +RRQVS+EEG D+AK E +M+IETSAK GYNIKALFRKLAT LPGME   +T ++NLIDIK+
Sbjct:   39 VPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVVMLVGNKTDISDRRQVSIEEGSDKAKEENVMYIETSAKAGYNIKALFRKLATVLPGMENTMITGDSNLIDIKL 227
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BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: A0A4D9D1C8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1C8_9STRA)

HSP 1 Score: 322 bits (825), Expect = 1.060e-109
Identity = 161/193 (83.42%), Postives = 176/193 (91.19%), Query Frame = 1 
Query:   40 STPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNANLIDIKV 618
            S  ++PQI  LAKYKLVFLGDQ VGKTSIITRFMYD F+KNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKW++DVRNERG+DVI+MLVGNKTDL +RRQVS EEG D+AK + IMFIETSAK G+NIK LFRKLATALPGME+A    +ANLIDIK+
Sbjct:   12 SPASLPQIPSLAKYKLVFLGDQGVGKTSIITRFMYDTFEKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWVDDVRNERGNDVIIMLVGNKTDLSDRRQVSTEEGEDKAKQDNIMFIETSAKAGFNIKPLFRKLATALPGMESAQTQGSANLIDIKL 204
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BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: A0A5D6XJX8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJX8_9STRA)

HSP 1 Score: 322 bits (826), Expect = 1.390e-109
Identity = 157/190 (82.63%), Postives = 173/190 (91.05%), Query Frame = 1 
Query:   49 AVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNANLIDIKV 618
            +VPQIAPLAKYKLVFLGDQ VGKTS+ITRFMYD FD  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+ YDITNRASFLNTSKWIEDVR ERG DV++MLVGNKTD+ +RRQVS+EEG D+AK E +MFIETSAK GYNIKALFRKLAT LPGME   ++ ++NLIDIK+
Sbjct:   36 SVPQIAPLAKYKLVFLGDQGVGKTSVITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVAYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGADKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTAISGDSNLIDIKL 225
[Close]
BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: A0A8K1CRQ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRQ3_PYTOL)

HSP 1 Score: 322 bits (825), Expect = 1.910e-109
Identity = 158/194 (81.44%), Postives = 174/194 (89.69%), Query Frame = 1 
Query:   37 GSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNANLIDIKV 618
            G +  VPQIAPLAKYKLVFLGDQ VGKTSIITRFMYD FD  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+ YDITNRASFLNTSKWIEDVR ERG DV++MLVGNKTD+ +RRQVS+EEG D+AK E +MFIETSAK G+NIKALFRKLAT LPGME   ++ ++NLIDIK+
Sbjct:   31 GGSVTVPQIAPLAKYKLVFLGDQGVGKTSIITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVAYDITNRASFLNTSKWIEDVRAERGQDVVIMLVGNKTDISDRRQVSIEEGADKAKEENVMFIETSAKAGFNIKALFRKLATVLPGMENTAISGDSNLIDIKL 224
[Close]
BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Match: W2LJW2_PHYPR (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=W2LJW2_PHYPR)

HSP 1 Score: 322 bits (826), Expect = 3.070e-109
Identity = 158/189 (83.60%), Postives = 173/189 (91.53%), Query Frame = 1 
Query:   52 VPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDNFDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVSVEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNANLIDIKV 618
            VPQIAPLAKYKLVFLGDQ VGKTS+ITRFMYD FD  YQATIGIDFLSKTMY+EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV+VYDITNRASFLNTSKWIEDVR ERG DV++MLVGNKTD+ +RRQVS+EEG D+AK E +MFIETSAK GYNIKALFRKLAT LPGME   ++ ++NLIDIK+
Sbjct:   60 VPQIAPLAKYKLVFLGDQGVGKTSMITRFMYDTFDNAYQATIGIDFLSKTMYMEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRASFLNTSKWIEDVRTERGQDVVIMLVGNKTDISDRRQVSIEEGSDKAKEENVMFIETSAKAGYNIKALFRKLATVLPGMENTMISGDSNLIDIKL 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5755.13323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ4_ECTSI2.230e-12895.94Rab6, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1RZC8_HETAK5.350e-11786.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZT5_9STRA6.180e-11483.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CM24_9STRA4.110e-11386.24Rab6, rab family GTPase n=1 Tax=Tribonema minus Ta... [more]
K3WVM7_GLOUD4.820e-11182.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0P1AX93_PLAHL1.050e-10983.60Rab family gtpase n=1 Tax=Plasmopara halstedii Tax... [more]
A0A4D9D1C8_9STRA1.060e-10983.42Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A5D6XJX8_9STRA1.390e-10982.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1CRQ3_PYTOL1.910e-10981.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2LJW2_PHYPR3.070e-10983.60Uncharacterized protein n=20 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5755contigH-paniculata_contig5755:377..4012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.3
Seed ortholog evalue2.9e-100
Seed eggNOG ortholog2880.D7FMQ4
Preferred nameRab6
KEGG koko:K07893,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005911,GO:0006810,GO:0006890,GO:0006891,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017076,GO:0019001,GO:0030054,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0042147,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0071944,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1901265,GO:1901363
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG0094@1,KOG0094@2759
Ec32 ortholog descriptionRab6, RAB family GTPase
Ec32 orthologEc-23_001190.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131,ko04147
Exons4
Model size618
Cds size618
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5755.13323.1prot_H-paniculata_contig5755.13323.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5755 377..4012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.738981-CDS-H-paniculata_contig5755:376..5501622930621.738981-CDS-H-paniculata_contig5755:376..550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5755 377..550 -
1691481376.451319-CDS-H-paniculata_contig5755:376..5501691481376.451319-CDS-H-paniculata_contig5755:376..550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5755 377..550 -
1622930621.7582927-CDS-H-paniculata_contig5755:861..9671622930621.7582927-CDS-H-paniculata_contig5755:861..967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5755 862..967 -
1691481376.4652605-CDS-H-paniculata_contig5755:861..9671691481376.4652605-CDS-H-paniculata_contig5755:861..967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5755 862..967 -
1622930621.7739959-CDS-H-paniculata_contig5755:2637..27721622930621.7739959-CDS-H-paniculata_contig5755:2637..2772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5755 2638..2772 -
1691481376.4767292-CDS-H-paniculata_contig5755:2637..27721691481376.4767292-CDS-H-paniculata_contig5755:2637..2772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5755 2638..2772 -
1622930621.789974-CDS-H-paniculata_contig5755:3809..40121622930621.789974-CDS-H-paniculata_contig5755:3809..4012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5755 3810..4012 -
1691481376.4868107-CDS-H-paniculata_contig5755:3809..40121691481376.4868107-CDS-H-paniculata_contig5755:3809..4012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5755 3810..4012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5755.13323.1

>prot_H-paniculata_contig5755.13323.1 ID=prot_H-paniculata_contig5755.13323.1|Name=mRNA_H-paniculata_contig5755.13323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MFVYNDKYDRENGSTPAVPQIAPLAKYKLVFLGDQSVGKTSIITRFMYDN
FDKNYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS
VAVIVYDITNRASFLNTSKWIEDVRNERGDDVIMMLVGNKTDLKERRQVS
VEEGGDRAKAEGIMFIETSAKGGYNIKALFRKLATALPGMETAPVTSNAN
LIDIKV
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mRNA from alignment at H-paniculata_contig5755:377..4012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5755.13323.1 ID=mRNA_H-paniculata_contig5755.13323.1|Name=mRNA_H-paniculata_contig5755.13323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3636bp|location=Sequence derived from alignment at H-paniculata_contig5755:377..4012- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGTATATAATGACAAATACGACAGAGAAAACGGGAGTACCCCTGC
GGTGCCGCAAATCGCGCCTCTGGCGAAGTACAAGCTGGTGTTCTTGGGGG
ATCAGAGCGTCGGCAAGACGAGCATCATCACGCGATTCATGTACGACAAC
TTCGATAAAAATTACCAGGCCACCATCGGAATTGACTTTCTCTCCAAGAC
CATGTGAGTGTGATGTTGCCTGTTTTTTGGGGGGTGGAGGGCTGCTGGAT
AGAAAATCCTCTATTTCATCCACCAGGATTCTCGCTCTTAAGTCAGCCCA
CTTGCCACAGTTGGTTGAATGATAACTCGGATACATGATGAAAAGCCAAA
TTCCATTGTACCTTGAGATTACGAAGCTGAATTCAAACTTCGGTTGTTGT
GTACACTTGAGCAAAGTTAGATCACGAAGGGGGAGTGTGCTAAAGTTGAG
CTCTGTATCATCTTGGATTGTACTGCAAAAGCTGTGAACAAAAAAATTGT
GCAAGAGTTGACGTGTCGCTCTTGATTGCAGCGTTCGCTGCAAGTTATGT
TGTCAATATCCAGTATTGATGTCAAGATGATACAGTTTGTTGGTAAGCTA
TTCTTTGTCGATGGGTGTTGCGTAGTCGCAGAATAGAGTATGAACATGAC
CACGCTGTTCCATACAGTCATCCTCCAGTCCGTATTTTGTTCTCGACACA
CACCACGACTCGCTATGATGGTTAAAAAAAATCGTTTTTCAGGGATCCCT
TGAATACAGAATGGAAACTGTTCCGAAAAGACGGACCATATCCTTTTGTC
TTCCCGTACTAATACATACTGATAATGATGTATGCATTGTGTGATGTGAT
GATTGTTGTGGGTCATGGTGTGTGATTTCGAAAAAGTGTATAGCCACTGC
CGGTATTTTCAGTCATGTCTACTCGGTATGTTCTCTGTGTATGCATTCTT
CAAATGGCAGCACAACACACTTCAGTTCAGCTATGATGCAATTATGCGTA
CGTACATACATAAAGTAACAGGTAATTTCGAAAAGTTTCGCACAGCCGTA
GCTTTTGTTGGCTTTTTTCTTTTTTTTGGTTGTGATGATCGTTCTATTTT
AACCACCTTATATATTCCACGAGACATGGAACCTAATAACTGTGAACCGT
GCGGACGTAGTTTTTCTACTACTTTTTTTTTTTTCCTCTCGTGACACAAG
ATAATCCCCACTATAACATCAAATTAACACAAATGACCAGGTACTTGGAA
GACCGGACCGTGCGACTGCAGCTGTGGGATACCGCCGGCCAGGAGCGTTT
TCGGTCGCTGATTCCGAGCTACATCCGAGACTCCTCGGTGGCGGTGATAG
TCTACGATATCACCAACAGGGCTAGGTGAATTTTTAAAAATGAAGCTTTG
CTCGAGTTTTTACTTTGTTATTCATTAGTGGTGATGCCGCGGCTGCGCCT
ATCTGATGTAGTCATATTTCAATCCTTGTCCTTGACCCACAGACTCTCTG
CGCTCGCAGTGTGGGGTTGCCTAGTGAGTGTGACTTTCTTTGTCTGTGCT
CGCATGAAGATTCATTCGTCAGGAGTTACTCGAGTACAGAGTGGAAAATG
TTCCGAAATAATTATGGCTACCTTGCCGTGTTTAATAGTAACAAAAAGGA
GGATATTGCAAGAAACTGATGGCGAACGTGAGTACAGTCATGACTACTGG
CTACATCGGTGCAGTGCGTATTGAAAATCCATGACCGAAACGCGCATAAG
TGTGGGCGCTGCGTTGTTGCGGGTACTGCTTAGCAGGGACAGTTCCTATG
GCGTCTCGTTTTTCAGGGAATCAGTCGAGTATAGATACGAAAGCTATGCT
GGAATGACTTGGTCGCGGTGATGCTCTACTCTCCAACACAGCCTTCAAAG
CTAAGGATGAAAGCAAGTACAGAAGAAGAAGCAACACTGAAAATATATTG
TATCCAACCAGGGGGCCCCCGTATCTCGGTTCAGAAGCCACGACCCAACA
AAACGTTTGTAGGCGAACAAAGGTGGTTGGGGTGGGAACAACATGGAAGC
AGCGGAAAAGGCTTTTACCTCAGCCTTCCGGGGGTTGAAAAAAAAGCAAA
AACAAATGCGCAAGCCGCTGGGTTTCTTGTCCACGGAATGATTGAATTTT
AAAGAGGAAAATAATGGTGTTTGTCCCATTTTTCAGGCATGCATGGCCAC
TGCAGACCCCATGCTACATACGCGGGGGCTTTATATGGTCCTGTTTGTGA
AAAACGGCAACCCTATGACCGCGGGTACTGAGCTATTAGTGTGTTAGGAT
ATTAAGATCTTGCTGAGTGCACAGGTGCCTCCACAGCCATCTGTCCACAA
CCTCTCCATGAACCCCACCCTATATACTGAACAGTATTGCGGTAAGTGCT
CAATTAAGTAGTCAGTAATCGTCGATGTTTGCTGCAGAGTGCTGGTACGC
TGATTTCGGGCCATATGACCGATGTTTGCTTGCCTACGGTGGGCCTGCGC
GCGAGCATTGCAAATAGTTAGTGTAGTTCGAGGGTTGATCGCCTACTCGT
TTCCCTTCCTGTTTTTTGCCAGAAGCTACTTGAGTACAGAATTGAAAGCT
GTTTTGATACTATCATTTCCTTAGCGTATGAGTAATAGAGGGGTAAAACA
GTTACTGAAAGCGTTTCAGTGTAACCGCAATTTGATACGGACAGGATGTG
CGCAAGGAATGCCAAAAGTAATCAGCAAGTGAACCTACTTTTTTTTTTTT
CGTCAAAGTGTGTGAGATCAGAGCGAATCGAGATATGATCCGACGTGTTT
TTGGTTCTGTTTTTTTTTTTTTCTGCGGGTCGAAACGGAATCGATCGATC
CATCAAGTTATCGTGCAGATGTATTTTCTTCTTGAAGGGGGTTCTTGTTT
CGCACCGACGCCGGCAGATTAGACAATGATATTTAACTCACCCATGACCC
CGTTATGTTTTGGTGATGGTCTATCCCCTCGCGTAACTTTTTTTTTTTTT
CCCGTGTCTTCACATATGTCCATTTTTTTTTTCCTGCTTGCACAGTTTCC
TTAACACAAGCAAATGGATCGAGGATGTTCGCAACGAGAGGGGGGATGAC
GTCATAATGATGCTGGTTGGGAACAAAACCGACCTCAAGGAGCGGCGGCA
GGTTAGTTGCTTGGTTGCTTGGTTGCCCTCGAGGTTAATTTATCGTTTCT
GCTCAGTATAGTCGACGTCTGCAGATATGATTAGTATATTGTATGTTGGT
TGCGGCCGGCTGGCGGGCTGGCTGTTGAGGCCACGTATAGGGGAACAAAT
TCTATTTTTTTTATTTGGCCGTGTTTTATTGGACATTTTATTGCAGCCTA
ACCTAATCAAGTATGTGTCGTCATATATATATATATATATATTCACACAT
CAATTCATATTTATAAATCTACATTGGTGCGCTCGTCGTGGTTCTGTGGA
TGGGGGAGGCAGGTGTCAGTAGAGGAGGGGGGGGACCGAGCGAAAGCAGA
GGGCATAATGTTCATCGAAACGAGCGCAAAGGGGGGTTATAACATCAAGG
CGTTGTTTCGGAAGCTGGCGACTGCGCTGCCGGGAATGGAGACTGCACCC
GTCACGTCTAATGCGAATTTGATCGACATCAAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig5755:377..4012-

>mRNA_H-paniculata_contig5755.13323.1 ID=mRNA_H-paniculata_contig5755.13323.1|Name=mRNA_H-paniculata_contig5755.13323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig5755:377..4012- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGTATATAATGACAAATACGACAGAGAAAACGGGAGTACCCCTGC
GGTGCCGCAAATCGCGCCTCTGGCGAAGTACAAGCTGGTGTTCTTGGGGG
ATCAGAGCGTCGGCAAGACGAGCATCATCACGCGATTCATGTACGACAAC
TTCGATAAAAATTACCAGGCCACCATCGGAATTGACTTTCTCTCCAAGAC
CATATGTTTGTATATAATGACAAATACGACAGAGAAAACGGGAGTACCCC
TGCGGTGCCGCAAATCGCGCCTCTGGCGAAGTACAAGCTGGTGTTCTTGG
GGGATCAGAGCGTCGGCAAGACGAGCATCATCACGCGATTCATGTACGAC
AACTTCGATAAAAATTACCAGGCCACCATCGGAATTGACTTTCTCTCCAA
GACCATGTACTTGGAAGACCGGACCGTGCGACTGCAGCTGTGGGATACCG
CCGGCCAGGAGCGTTTTCGGTCGCTGATTCCGAGCTACATCCGAGACTCC
TCGGTGGCGGTGATAGTCTACGATATCACCAACAGGGCTAGGTACTTGGA
AGACCGGACCGTGCGACTGCAGCTGTGGGATACCGCCGGCCAGGAGCGTT
TTCGGTCGCTGATTCCGAGCTACATCCGAGACTCCTCGGTGGCGGTGATA
GTCTACGATATCACCAACAGGGCTAGTTTCCTTAACACAAGCAAATGGAT
CGAGGATGTTCGCAACGAGAGGGGGGATGACGTCATAATGATGCTGGTTG
GGAACAAAACCGACCTCAAGGAGCGGCGGCAGTTTCCTTAACACAAGCAA
ATGGATCGAGGATGTTCGCAACGAGAGGGGGGATGACGTCATAATGATGC
TGGTTGGGAACAAAACCGACCTCAAGGAGCGGCGGCAGGTGTCAGTAGAG
GAGGGGGGGGACCGAGCGAAAGCAGAGGGCATAATGTTCATCGAAACGAG
CGCAAAGGGGGGTTATAACATCAAGGCGTTGTTTCGGAAGCTGGCGACTG
CGCTGCCGGGAATGGAGACTGCACCCGTCACGTCTAATGCGAATTTGATC
GACATCAAGGTAGTGTCAGTAGAGGAGGGGGGGGACCGAGCGAAAGCAGA
GGGCATAATGTTCATCGAAACGAGCGCAAAGGGGGGTTATAACATCAAGG
CGTTGTTTCGGAAGCTGGCGACTGCGCTGCCGGGAATGGAGACTGCACCC
GTCACGTCTAATGCGAATTTGATCGACATCAAGGTA
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