mRNA_H-paniculata_contig5754.13320.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5754.13320.1 vs. uniprot
Match: D8LFS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS6_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.520e-38 Identity = 82/111 (73.87%), Postives = 94/111 (84.68%), Query Frame = 1
Query: 886 MAQGGFKKSGGSIKVKGKGGKGKAVLAKSSKRVVNKGKTAVKKGSWNLPPKQQKNKEAAKEELATTKIINSANEQKAAARCFQNQEKLFLTDVKESGRDLARDIKRKALTR 1218
MAQG FKKSGG+ KVKGK GKG +A S+R+VNKGKTAVKKGSWN+PPKQ AAKEE+A TK+INS NE++AAA+CFQNQEKLFL +VKESGR+LARDIKRKAL R
Sbjct: 1 MAQGSFKKSGGAPKVKGKAGKGN--VAAKSRRLVNKGKTAVKKGSWNMPPKQAAKLAAAKEEMARTKMINSTNEKQAAAKCFQNQEKLFLREVKESGRELARDIKRKALKR 109
BLAST of mRNA_H-paniculata_contig5754.13320.1 vs. uniprot
Match: A0A7S1TQR0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR0_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 8.140e-13 Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 946 KGKAVLAKSSKRVVNKGKTAVKKGSWNLPPKQQKNKEAAKEELATTKIINSANEQKAAARCFQNQEKLFLTDVKESGRDLARDIKRKALTRKKTRIEEKLIKAKEKLERVER 1281
KGKA K + V K + KKG+ K+ + + A E+ +K IN+ NE+ AA+ QN E++ TDVK +GR LA++I+R+ALT+KKTRIEEK+ KAKE+L +ER
Sbjct: 13 KGKAPPKKKLR--VTKTRRNPKKGTAEKMAKRGRERVLALEKAKQSKAINATNERTLAAKAIQNGERIVRTDVKNAGRALAKEIRRQALTKKKTRIEEKIEKAKERLHNIER 122
BLAST of mRNA_H-paniculata_contig5754.13320.1 vs. uniprot
Match: A0A836CMQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ4_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 4.110e-9 Identity = 53/141 (37.59%), Postives = 82/141 (58.16%), Query Frame = 1
Query: 886 MAQGGFKKSGGSIKVKGKGGK------GKAVLAKSSKRVVNKGKTAVKKGSW--NLPPKQQKNKEAAKEELATTKIINSANEQKAAARCFQNQEKLFLTDVKESGRDLARDIKRKALTRKKTRIEEKLIKAKEKLERVERK 1284
MAQG FK +G +KGK GK GK V A + + + N+ P++ +A K+E TK I+ + AA+ NQEK+ L D++ SG+ L ++++R ALTRKK+RIEEKL+ AKEKL++++++
Sbjct: 1 MAQGTFKSTG----LKGKAGKPQIKKGGKHVAATKASAGLGRXXXXXXXXXXXXNVAPRKPDALQAYKKEKEVTKQIHKQLITQTAAKAISNQEKMELGDIRGSGKALVKEMRRDALTRKKSRIEEKLLAAKEKLDKLDQR 137
BLAST of mRNA_H-paniculata_contig5754.13320.1 vs. uniprot
Match: A0A7R9UB02_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB02_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 8.250e-8 Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 964 AKSSKRVVNKGKTAVKKGSWNLPPKQQKNKEAAKEELATTKIINSANEQKAAARCFQNQEKLFLTDVKESGRDLARDIKRKALTRKKTRIEEKLIKAKEKLERVER 1281
A K+ V K + KKG + K+ + E A ++ IN+ E+ AA+ QN E+L D+K G++LA++I+R+ALTRKK+RIEEKL +AK+KL + +R
Sbjct: 21 APQKKKRVTKMQKRTKKGGSDKVAKRGLRRLQDLESRAQSRAINANLERVLAAKAVQNGERLLRPDMKSKGKELAKEIRRQALTRKKSRIEEKLEQAKQKLAQKQR 126
BLAST of mRNA_H-paniculata_contig5754.13320.1 vs. uniprot
Match: W7TUM4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUM4_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 5.350e-6 Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 1
Query: 886 MAQGGFKKSGGSIKVKGKGGKGKAVLAKSSKRVVNKGKTAVKKGSWNLPPKQQKNKEAAKEELATTKIINSANEQKAAARCFQNQEKLFLTDVKESGRDLARDIKRKALTRKKTRIEEKLIKAKEKLE 1269
MAQG K + KG K K AK+S + +TA KKG+ PK + + A E+ TK IN E+ ++AR + + + DVK G+++ RD++R+ L+RKK+R+EEKL + + K+E
Sbjct: 1 MAQGLAK-----LSKKGFSQKSKKAHAKASSK-----RTAAKKGNPTQLPKNIQRRGMALEQARITKAINQNVERVSSARALKAGDTFSMQDVKRIGKEMNRDMRREELSRKKSRVEEKLAELQAKVE 118
BLAST of mRNA_H-paniculata_contig5754.13320.1 vs. uniprot
Match: A0A7S2WKX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX0_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 6.760e-6 Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 1033 PKQQKNKEAAKEELATTKIINSANEQKAAARCFQNQEKLFLTDVKESGRDLARDIKRKALTRKKTRIEEKLIKAKEKLE 1269
PK Q E K+ T+ IN+ EQ AA+ Q E+L D+ G+++ARDIKR+AL RKK R+EEKL K + KL+
Sbjct: 36 PKNQARLERFKQRQTVTRQINANIEQLTAAKVCQAGERLKTRDIAAKGKEMARDIKREALKRKKPRVEEKLEKLRAKLD 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5754.13320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5754.13320.1 >prot_H-paniculata_contig5754.13320.1 ID=prot_H-paniculata_contig5754.13320.1|Name=mRNA_H-paniculata_contig5754.13320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp MAQGGFKKSGGSIKVKGKGGKGKAVLAKSSKRVVNKGKTAVKKGSWNLPPback to top mRNA from alignment at H-paniculata_contig5754:233..4415- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5754.13320.1 ID=mRNA_H-paniculata_contig5754.13320.1|Name=mRNA_H-paniculata_contig5754.13320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4183bp|location=Sequence derived from alignment at H-paniculata_contig5754:233..4415- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5754:233..4415- >mRNA_H-paniculata_contig5754.13320.1 ID=mRNA_H-paniculata_contig5754.13320.1|Name=mRNA_H-paniculata_contig5754.13320.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig5754:233..4415- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |