mRNA_H-paniculata_contig5753.13319.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI) HSP 1 Score: 334 bits (857), Expect = 5.020e-98 Identity = 237/478 (49.58%), Postives = 288/478 (60.25%), Query Frame = 3
Query: 330 RYAIDFFQRIVRADFSGTDS-VSIEDEAYIWRLFEHPDITVIIKGLAENLDSSKWSTEYLNERCGHLMYHQFRRFVRPEDDKDGAFVAVADEDKAWRSMSIADYFRYTDRRAEELRVQKAVAAASVAAAPAERDKGGGGMTPDQSVAAKVGTNATGLAGGASDPSGEGDHNRSSGRSGXXXXXXXXXXXEIGGTRXXXXXXXXXXXXXXXAEGEAPEEPTVHFVGHDGARRTIPLLREAIYLTDMDVSRYLPECADDLSVNFKMDLRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMD-EDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPGKKPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRKEHPLP 1757
+Y ID R+VRADFS + + + DEAY+ LFE PD+TV+I GLA LD W+T YLNERCG +MYH FRRF RP + G FV + ++AW SM + DY RY ++ A+ R + A A PD SV + + T +G XXX XXXXXXXXXXXXXXX P++ F+ +DG RT+ LLREA+YLTDMD++RYLPECA++LS FKMD+ P G CAM + PRE+R FMGPNLY+TP GS T HQDGNGTVDS HQCL GRNRV+MLRR+D E+DKR ALRIL +M+ G + TP G G+ XXXXXXXXXXXXXXXXXXXXXXX E D L++ PH G P WPT+ +E+LRELN+CPS F LEPG+ VHINKGRLH+FRKE PLP
Sbjct: 22 KYRIDMKNRLVRADFSKSGARIDPLDEAYVLGLFERPDVTVVINGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPVREEAWSSMRLRDYVRYLNKLADAKRARATXXXXXXPADEAPSAAAAEPGQPDASVPGRNSGSVTXXXXXXXXXXXXXXXXXXAGAKAGSQEECRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSMRFMSYDGNNRTLELLREAVYLTDMDLTRYLPECANNLSREFKMDILPAGARCAMQHMPRESRTFMGPNLYITPPGSWTQCHQDGNGTVDSGHQCLAGRNRVIMLRRLDREEDKRAALRILXXXXXXXXXXXAEMN-GDKPGTPVVSHAGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXEK--------------ERDSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLP 484
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA) HSP 1 Score: 252 bits (643), Expect = 3.840e-69 Identity = 166/476 (34.87%), Postives = 211/476 (44.33%), Query Frame = 3
Query: 333 YAIDFFQRIVRADFSGTDSVSIEDEAYIWRLFEHPDITVIIKGLAENLDSSKWSTEYLNERCGHLMYHQFRRFVRPEDDKDGAFVAVADEDKAWRSMSIADYFRYTDRRAEELRVQKAVAAASVAAAPAERDKGGGGMTPDQSVAAKVGTNATGLAGGASDPSGEGDHNRSSGRSGXXXXXXXXXXXEIGGTRXXXXXXXXXXXXXXXAEGEAPE-EPTVHFVGHDGARRTIPLLREAIYLTDMDVSRYLPECADDLSVNFKMDLRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPGKKPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRKEHPLP 1757
Y+ D R+VR D SGT V +DEAYI +L + PD+TVII+GL++ L WS YL RC LM H+ R F R + + WRSM + Y Y + RA A + +RD+ G + Q+ A +GGT + E P+ +P G + +P+L E +YL D D+ ++LPE DL NFK+DL P G+ C + P PFMGPNLY+TP G+ T FHQDG+GTVDS HQCL+GRN VVMLRRMDE +KR+ALRI LC + PS D LY PH G+KP WPTE Q+++LR YCPS F LEPGD VHINKGRLH+FRK P P
Sbjct: 457 YSFDELNRVVRCDVSGTPVVHPDDEAYICQLLDRPDLTVIIRGLSDGLSPHLWSIPYLRSRCRDLMVHKLRCFRRRSPSSTESL------ETEWRSMPVHSYCNYLEARA-------AAHETLLGLDEVDRDEWLHGRSKSQANGA------------------------------------------VGGTEVEAKTDPISAK-----DSEEPQSQPLFEATDSAGKKVDVPVLDEGLYLIDFDLPKHLPELFCDLERNFKVDLLPRGRRCLFRHLPLRGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHQCLRGRNEVVMLRRMDEPNKRHALRI--------LC----------KGCPSY----------------------------------------------------DALYGKPHDAGEKPPWPTETQIDELRRRGYCPSVFTLEPGDYVHINKGRLHAFRKRSPPP 802
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA) HSP 1 Score: 202 bits (515), Expect = 6.130e-57 Identity = 107/250 (42.80%), Postives = 131/250 (52.40%), Query Frame = 3
Query: 1002 HDGARRTIPLLREAIYLTDMDVSRYLPECADDLSVNFKMDLRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPGKKPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRKEHP 1751
H G IP+L E IY+ D DV +YLPE DL+ + K+DL P G+ C + + P PFMGPNLY+TP G+ T FHQDG+GTVDS H CL+GRN VVMLRR+DE +K ALRIL+G + D LY PH G+KPSWPT +Q+E LR+LNYCPS F LEPG+ VHINKGRLH+FRK+ P
Sbjct: 32 HLGLPMAIPVLEEGIYMIDFDVPKYLPELQADLTRHLKLDLLPRGERCMLRHLPLNGHPFMGPNLYITPPGTFTHFHQDGHGTVDSGHLCLRGRNEVVMLRRLDEPNKLRALRILNGSC----------------------------------------------------------------------LNYDALYGMPHNDGQKPSWPTPSQIESLRDLNYCPSVFTLEPGEFVHINKGRLHAFRKKIP 211
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A448ZRZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ6_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.540e-44 Identity = 107/263 (40.68%), Postives = 131/263 (49.81%), Query Frame = 3
Query: 963 GEAPEEPTVHFVGHDGARRTIPLLREAIYLTDMDVSRYLPECADDLSVNFKMD-LRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPG--KKPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRK 1742
G A +EP F + G TI + A+Y+ D+D+SR +P D+ +F++ + PGG HC M+ EARPFMGPNLYVTP S T FHQDG+GTVDS H C+ G N VVMLRR+ E K++AL ILSG T H G LY PHG G KKP WPT+ +E R++ YCPS ILEPGDLVHINKGRLH+FRK
Sbjct: 600 GTAQDEPQFTFCDYQGKTHTIGVRTSALYMIDVDMSRLVPLLNDNFLESFELPAVLPGGSHCMMNSVTPEARPFMGPNLYVTPPASFTHFHQDGHGTVDSGHLCISGYNEVVMLRRLTERHKKHALWILSGSR-----------------TDDSHFDG--------------------------------------------------LYSMPHGDGLGKKPPWPTKDMLEDCRKMGYCPSVLILEPGDLVHINKGRLHAFRK 795
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A7S4EEL1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL1_9STRA) HSP 1 Score: 174 bits (440), Expect = 3.340e-42 Identity = 101/259 (39.00%), Postives = 126/259 (48.65%), Query Frame = 3
Query: 975 EEPTVHFVGHDGARRTIPLLREAIYLTDMDVSRYLPECADDLSVNFKMD-LRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPG--KKPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRK 1742
EEP F H G T+ + A+Y+ D D++R P ++ +F++ + PGG HC M+ +ARPFMGPNLYVTP S T FHQDG+GTVDS H C+ G N VVM RR+ E K++AL ILSG E G D LY PHG G KKP WP+ +E+ + + YCPS FILEPGDLVHINKGRLH+FRK
Sbjct: 589 EEPEFTFEDHQGKTHTLGVWTSALYMIDFDMNRLTPLLNENFLKSFELPAVLPGGSHCMMNSVTADARPFMGPNLYVTPPASFTHFHQDGHGTVDSGHLCISGFNEVVMFRRLTERHKKHALWILSGKITE-------------------------------------------------------------------GYHFDGLYSVPHGDGLGKKPPWPSNDMVEECKTMGYCPSIFILEPGDLVHINKGRLHAFRK 780
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A1E7FK00_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK00_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.970e-39 Identity = 98/259 (37.84%), Postives = 127/259 (49.03%), Query Frame = 3
Query: 975 EEPTVHFVGHDGARRTIPLLREAIYLTDMDVSRYLPECADDLSVNFKMD-LRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPG--KKPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRK 1742
EEP F H G ++ + A+Y+ D+D+ R +P ++ +F++ + PGG HC M+ EARPFMGPNLYVTP S T FHQDG+GTVDS H C+ G N V+MLRR+ E KR+AL ILSG K +G H +G LY PHG G KP WPT +E+ + + YCPS L PG+L+HINKGRLH+FRK
Sbjct: 581 EEPMFSFEDHVGKTHSLGVWTSALYMIDVDIMRLMPLLNENFLESFELSSVLPGGSHCMMNSVTPEARPFMGPNLYVTPPASFTHFHQDGHGTVDSGHLCISGFNEVIMLRRLTERHKRHALWILSG----------KQPNG-------SHFEG--------------------------------------------------LYSVPHGDGLGSKPKWPTMDMVEECKRMGYCPSLLTLGPGELIHINKGRLHAFRK 772
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A7S3Q867_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q867_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.680e-38 Identity = 95/243 (39.09%), Postives = 114/243 (46.91%), Query Frame = 3
Query: 1017 RTIPLLREAIYLTDMDVSRYLPECADDLSVNFKMD-LRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPGKKPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRK 1742
RT R+ +YL DMD+ R LPE +D NF++ PGG C M+ RPFMGPNLYVTP GS T FHQDG+GTVDS H C+ G N V+MLRRM ED KR AL +L + R + + D LY PH GKKP WP ++ ELNY P FIL+PG +HINKGRLH+FRK
Sbjct: 490 RTFDPRRDYLYLLDMDLKRTLPESHNDFLKNFRLPKCLPGGDFCMMNSVNDLGRPFMGPNLYVTPPGSFTHFHQDGHGTVDSGHMCIDGYNEVIMLRRMSEDHKRQALHLLHYNDRR-----------------------------------------------------------------QKNIHYDALYGLPHHDGKKPLWPDHEAIKNCDELNYYPCVFILKPGQFLHINKGRLHAFRK 667
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A7S1ZIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA) HSP 1 Score: 157 bits (397), Expect = 1.140e-36 Identity = 94/252 (37.30%), Postives = 126/252 (50.00%), Query Frame = 3
Query: 1005 DGARRTIPLLREAIYLTDMDVSRYLPECADDLSVNFKMD-LRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPH--GPGKKPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRKEHP 1751
+G +++ ++ +Y+ D D+ + LP +D FKM PGG HC M+ RPFMGPN+Y+TP GS T FHQDG+GTVDS HQCL G N VVMLRR+ E K++AL++L G+ G T S+ ++ D LY PH G G++P WP +E+ R++NY PS FIL+PG VHINKGRLH+FRK P
Sbjct: 676 NGETKSVNVVDVVLYMIDYDMVKLLPPLYEDFINKFKMPGCLPGGIHCMMNSVNAGGRPFMGPNIYLTPPGSFTHFHQDGHGTVDSGHQCLSGYNEVVMLRRLTERHKQHALQLLRGE--------------GNGQTLSN-------------------------------------------------MQYDALYGLPHEDGCGERPMWPDCESIERCRKMNYYPSVFILKPGQHVHINKGRLHAFRKLSP 864
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A7S2VFF2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VFF2_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.500e-36 Identity = 86/225 (38.22%), Postives = 106/225 (47.11%), Query Frame = 3
Query: 1077 LPECADDLSVNFKMD-LRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPGKKPS--WPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRK 1742
LP+ +DL NFK+ + PGG HC M+ RPFMGPNLY+TP S T FHQDG+GTVDS H CL G N VVMLRR+ E K AL +L+G + S A+ + H DDL PS WPT+ + +E+ YCPS FIL+PG +VHINKGRLH+FRK
Sbjct: 1 LPKSFEDLQNNFKLSSILPGGSHCMMNAVNINGRPFMGPNLYITPPSSFTHFHQDGHGTVDSGHLCLSGYNEVVMLRRLPERHKCRALELLNGSSHSSYSALYGLPH-----------------------------------------------------------RDDL----------DPSLGWPTKGAIRFCKEMGYCPSVFILKPGQMVHINKGRLHAFRK 156
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Match: A0A7S3L187_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L187_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.170e-35 Identity = 87/239 (36.40%), Postives = 116/239 (48.54%), Query Frame = 3
Query: 1038 EAIYLTDMDVSRYLPECADDLSVNFKM-DLRPGGQHCAMHYTPREARPFMGPNLYVTPAGSMTPFHQDGNGTVDSAHQCLKGRNRVVMLRRMDEDDKRNALRILSGDARESLCAIVKMSHGGRRSTPSDHTKGGVGSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGKAGVEDDLLYKSPHGPGK---KPSWPTEAQMEKLRELNYCPSEFILEPGDLVHINKGRLHSFRK 1742
+ IY+ D+D+++ LP+ D NFK+ ++ PGG+ C M+ P+ RPFMGPNLY+TPAGS T HQDG+GTVDS H + G N V+MLRRM E KRNA +++ G A + D LY PH G +P WPT + + R +NYCP+ FIL+PG +HINKGRLH+FRK
Sbjct: 1094 DVIYMLDLDMTKLLPQTYQDFVDNFKIKEMLPGGEWCMMNKVPQSGRPFMGPNLYMTPAGSFTHLHQDGHGTVDSGHYNVTGYNEVIMLRRMPEIHKRNACQMVPG----------------------------------------------------------------------ASAKYDALYGKPHDSGMGIVRPDWPTVDTVSRWRGMNYCPAVFILKPGQHIHINKGRLHAFRK 1262 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5753.13319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5753.13319.1 >prot_H-paniculata_contig5753.13319.1 ID=prot_H-paniculata_contig5753.13319.1|Name=mRNA_H-paniculata_contig5753.13319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=511bp MSKRGRKEAGTSLPHPGRSLPPPGPIPPPPLTSVGRYAIDFFQRIVRADFback to top mRNA from alignment at H-paniculata_contig5753:1390..12587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5753.13319.1 ID=mRNA_H-paniculata_contig5753.13319.1|Name=mRNA_H-paniculata_contig5753.13319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11198bp|location=Sequence derived from alignment at H-paniculata_contig5753:1390..12587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5753:1390..12587+ >mRNA_H-paniculata_contig5753.13319.1 ID=mRNA_H-paniculata_contig5753.13319.1|Name=mRNA_H-paniculata_contig5753.13319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3066bp|location=Sequence derived from alignment at H-paniculata_contig5753:1390..12587+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |