mRNA_H-paniculata_contig5752.13317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5752.13317.1
Unique NamemRNA_H-paniculata_contig5752.13317.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5752.13317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5752contigH-paniculata_contig5752:4063..4919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size859
Cds size855
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.1072018-CDS-H-paniculata_contig5752:4062..49171622930621.1072018-CDS-H-paniculata_contig5752:4062..4917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 4063..4917 +
1691481376.1814356-CDS-H-paniculata_contig5752:4062..49171691481376.1814356-CDS-H-paniculata_contig5752:4062..4917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 4063..4917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5752.13317.1prot_H-paniculata_contig5752.13317.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5752 4063..4917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5752.13317.1

>prot_H-paniculata_contig5752.13317.1 ID=prot_H-paniculata_contig5752.13317.1|Name=mRNA_H-paniculata_contig5752.13317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
SVIFAPEGVAVVAFFLFFVTLAARAVAAAAVVRVVRGVLLGASSATLADF
LIDISSALPNASTSAGEGSFSSSETWSSCDSICFACSRRTAFLGRSATDL
ESNSSPEEEDPDIPWSTTSTPRITSTVFASPFFATPRFLPLEGTFPADDP
SPTPGTINILPSLVFGVIFFKATALVVPPPLLTLGSTPATVELNPSPLSS
PCPGLSLSLARASPRPAAAAPSPILDVSSPTTFFFAPRLLFPSRGPTEAP
WRAAPAASFSLRTNRPPSSRGMAAAASAAAVAAMV
back to top

mRNA from alignment at H-paniculata_contig5752:4063..4919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5752.13317.1 ID=mRNA_H-paniculata_contig5752.13317.1|Name=mRNA_H-paniculata_contig5752.13317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=857bp|location=Sequence derived from alignment at H-paniculata_contig5752:4063..4919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGTGATTTTCGCCCCCGAGGGAGTGGCAGTAGTCGCCTTCTTCTTATT
CTTCGTGACCTTGGCGGCGCGGGCAGTCGCCGCGGCGGCAGTGGTGAGGG
TGGTACGGGGGGTCCTCCTGGGAGCGTCATCAGCAACGCTTGCTGATTTT
CTCATCGATATCTCGTCGGCACTGCCGAACGCGTCAACGTCTGCAGGCGA
GGGCTCGTTCTCGTCATCGGAAACGTGGTCCTCGTGCGATTCAATTTGTT
TCGCCTGCTCGCGGCGCACCGCCTTCCTCGGTCGCTCGGCAACAGACCTG
GAATCGAATTCATCACCCGAAGAAGAGGATCCCGACATCCCCTGGTCCAC
AACATCGACACCAAGGATCACATCCACCGTCTTCGCTTCCCCCTTCTTCG
CAACCCCACGCTTCTTACCCTTGGAAGGAACCTTCCCGGCCGATGACCCC
TCACCGACGCCTGGCACCATCAACATCCTCCCCTCACTCGTCTTCGGGGT
GATTTTCTTCAAAGCTACGGCGTTAGTAGTACCCCCACCGCTGCTGACCT
TGGGCTCCACCCCCGCCACAGTCGAACTTAACCCGTCACCTCTCTCTTCA
CCCTGCCCCGGCCTATCACTTTCACTCGCGCGAGCTTCGCCGCGGCCAGC
TGCGGCTGCTCCCTCTCCAATACTCGATGTCTCTTCTCCCACCACGTTCT
TCTTTGCACCGCGCCTTCTCTTCCCATCCAGAGGACCGACAGAAGCGCCA
TGGCGGGCGGCACCAGCAGCCTCATTTTCACTTCGCACGAATCGACCACC
TTCCTCACGAGGGATGGCCGCAGCTGCCTCCGCCGCCGCAGTCGCAGCGA
TGGTTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5752:4063..4919+

>mRNA_H-paniculata_contig5752.13317.1 ID=mRNA_H-paniculata_contig5752.13317.1|Name=mRNA_H-paniculata_contig5752.13317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig5752:4063..4919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGTGATTTTCGCCCCCGAGGGAGTGGCAGTAGTCGCCTTCTTCTTATT
CTTCGTGACCTTGGCGGCGCGGGCAGTCGCCGCGGCGGCAGTGGTGAGGG
TGGTACGGGGGGTCCTCCTGGGAGCGTCATCAGCAACGCTTGCTGATTTT
CTCATCGATATCTCGTCGGCACTGCCGAACGCGTCAACGTCTGCAGGCGA
GGGCTCGTTCTCGTCATCGGAAACGTGGTCCTCGTGCGATTCAATTTGTT
TCGCCTGCTCGCGGCGCACCGCCTTCCTCGGTCGCTCGGCAACAGACCTG
GAATCGAATTCATCACCCGAAGAAGAGGATCCCGACATCCCCTGGTCCAC
AACATCGACACCAAGGATCACATCCACCGTCTTCGCTTCCCCCTTCTTCG
CAACCCCACGCTTCTTACCCTTGGAAGGAACCTTCCCGGCCGATGACCCC
TCACCGACGCCTGGCACCATCAACATCCTCCCCTCACTCGTCTTCGGGGT
GATTTTCTTCAAAGCTACGGCGTTAGTAGTACCCCCACCGCTGCTGACCT
TGGGCTCCACCCCCGCCACAGTCGAACTTAACCCGTCACCTCTCTCTTCA
CCCTGCCCCGGCCTATCACTTTCACTCGCGCGAGCTTCGCCGCGGCCAGC
TGCGGCTGCTCCCTCTCCAATACTCGATGTCTCTTCTCCCACCACGTTCT
TCTTTGCACCGCGCCTTCTCTTCCCATCCAGAGGACCGACAGAAGCGCCA
TGGCGGGCGGCACCAGCAGCCTCATTTTCACTTCGCACGAATCGACCACC
TTCCTCACGAGGGATGGCCGCAGCTGCCTCCGCCGCCGCAGTCGCAGCGA
TGGTTTCAGTGATTTTCGCCCCCGAGGGAGTGGCAGTAGTCGCCTTCTTC
TTATTCTTCGTGACCTTGGCGGCGCGGGCAGTCGCCGCGGCGGCAGTGGT
GAGGGTGGTACGGGGGGTCCTCCTGGGAGCGTCATCAGCAACGCTTGCTG
ATTTTCTCATCGATATCTCGTCGGCACTGCCGAACGCGTCAACGTCTGCA
GGCGAGGGCTCGTTCTCGTCATCGGAAACGTGGTCCTCGTGCGATTCAAT
TTGTTTCGCCTGCTCGCGGCGCACCGCCTTCCTCGGTCGCTCGGCAACAG
ACCTGGAATCGAATTCATCACCCGAAGAAGAGGATCCCGACATCCCCTGG
TCCACAACATCGACACCAAGGATCACATCCACCGTCTTCGCTTCCCCCTT
CTTCGCAACCCCACGCTTCTTACCCTTGGAAGGAACCTTCCCGGCCGATG
ACCCCTCACCGACGCCTGGCACCATCAACATCCTCCCCTCACTCGTCTTC
GGGGTGATTTTCTTCAAAGCTACGGCGTTAGTAGTACCCCCACCGCTGCT
GACCTTGGGCTCCACCCCCGCCACAGTCGAACTTAACCCGTCACCTCTCT
CTTCACCCTGCCCCGGCCTATCACTTTCACTCGCGCGAGCTTCGCCGCGG
CCAGCTGCGGCTGCTCCCTCTCCAATACTCGATGTCTCTTCTCCCACCAC
GTTCTTCTTTGCACCGCGCCTTCTCTTCCCATCCAGAGGACCGACAGAAG
CGCCATGGCGGGCGGCACCAGCAGCCTCATTTTCACTTCGCACGAATCGA
CCACCTTCCTCACGAGGGATGGCCGCAGCTGCCTCCGCCGCCGCAGTCGC
AGCGATGGTT
back to top