mRNA_H-paniculata_contig5752.13316.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5752.13316.1
Unique NamemRNA_H-paniculata_contig5752.13316.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5752.13316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5752contigH-paniculata_contig5752:3096..3750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size657
Cds size546
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.0438168-UTR-H-paniculata_contig5752:3095..32041622930621.0438168-UTR-H-paniculata_contig5752:3095..3204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5752 3096..3204 +
1691481376.1553538-UTR-H-paniculata_contig5752:3095..32041691481376.1553538-UTR-H-paniculata_contig5752:3095..3204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5752 3096..3204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.0572908-CDS-H-paniculata_contig5752:3204..37501622930621.0572908-CDS-H-paniculata_contig5752:3204..3750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 3205..3750 +
1691481376.1637816-CDS-H-paniculata_contig5752:3204..37501691481376.1637816-CDS-H-paniculata_contig5752:3204..3750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 3205..3750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5752.13316.1prot_H-paniculata_contig5752.13316.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5752 3205..3750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5752.13316.1

>prot_H-paniculata_contig5752.13316.1 ID=prot_H-paniculata_contig5752.13316.1|Name=mRNA_H-paniculata_contig5752.13316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
MSSATLWVATLSDVASPTVSTGSSFFSPLRRAFCEGACVFVLAAATPASG
CSALSPDFRRRALLLVVVEEFLLSWVGERSSSGDDAAAFAGVASGLSGVE
RCASCFCFRCSGCFRCSCCLRFLVLFLRAPVDPAAAATAAAAAVDSSSSF
FFLFPLLTGTLLTRVPLPATSLPPIEPSRVTS
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mRNA from alignment at H-paniculata_contig5752:3096..3750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5752.13316.1 ID=mRNA_H-paniculata_contig5752.13316.1|Name=mRNA_H-paniculata_contig5752.13316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=655bp|location=Sequence derived from alignment at H-paniculata_contig5752:3096..3750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTTATTACTTTTCAATCCCGACGAGCGGTCACCGTGGTGATTCCCAT
TTCCTCCCGTACCACCGCCTTCCGCTGCGGCATCAGCTCGCTTGTTCGTC
GCCTCCTGCATGTCCTCAGCTACCTTATGGGTCGCAACGTTGTCGGATGT
AGCCAGCCCCACGGTTTCCACAGGTTCCAGCTTTTTTTCTCCTTTACGGC
GTGCCTTCTGCGAGGGCGCTTGTGTCTTTGTCTTGGCGGCAGCTACCCCG
GCCTCGGGCTGCTCCGCATTATCACCGGACTTTCGGCGGAGGGCTTTGCT
GCTTGTTGTTGTCGAAGAATTTTTGTTGTCTTGGGTTGGTGAGCGCAGCA
GTTCGGGCGATGATGCTGCCGCCTTTGCTGGTGTTGCTTCTGGTTTGTCT
GGAGTTGAGCGTTGTGCGTCTTGCTTCTGCTTTCGCTGCTCTGGCTGTTT
CCGTTGCTCTTGTTGCCTCCGCTTTTTGGTACTCTTCTTGCGTGCACCTG
TAGACCCCGCAGCCGCCGCCACCGCCGCCGCCGCGGCCGTTGACTCCTCG
TCATCGTTCTTCTTCCTTTTCCCGCTCTTGACAGGAACACTCTTGACACG
TGTACCCTTGCCAGCAACATCCTTGCCGCCGATCGAACCCTCGCGAGTGA
CATCG
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Coding sequence (CDS) from alignment at H-paniculata_contig5752:3096..3750+

>mRNA_H-paniculata_contig5752.13316.1 ID=mRNA_H-paniculata_contig5752.13316.1|Name=mRNA_H-paniculata_contig5752.13316.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig5752:3096..3750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCAGCTACCTTATGGGTCGCAACGTTGTCGGATGTAGCCAGCCC
CACGGTTTCCACAGGTTCCAGCTTTTTTTCTCCTTTACGGCGTGCCTTCT
GCGAGGGCGCTTGTGTCTTTGTCTTGGCGGCAGCTACCCCGGCCTCGGGC
TGCTCCGCATTATCACCGGACTTTCGGCGGAGGGCTTTGCTGCTTGTTGT
TGTCGAAGAATTTTTGTTGTCTTGGGTTGGTGAGCGCAGCAGTTCGGGCG
ATGATGCTGCCGCCTTTGCTGGTGTTGCTTCTGGTTTGTCTGGAGTTGAG
CGTTGTGCGTCTTGCTTCTGCTTTCGCTGCTCTGGCTGTTTCCGTTGCTC
TTGTTGCCTCCGCTTTTTGGTACTCTTCTTGCGTGCACCTGTAGACCCCG
CAGCCGCCGCCACCGCCGCCGCCGCGGCCGTTGACTCCTCGTCATCGTTC
TTCTTCCTTTTCCCGCTCTTGACAGGAACACTCTTGACACGTGTACCCTT
GCCAGCAACATCCTTGCCGCCGATCGAACCCTCGCGAGTGACATCGATGT
CCTCAGCTACCTTATGGGTCGCAACGTTGTCGGATGTAGCCAGCCCCACG
GTTTCCACAGGTTCCAGCTTTTTTTCTCCTTTACGGCGTGCCTTCTGCGA
GGGCGCTTGTGTCTTTGTCTTGGCGGCAGCTACCCCGGCCTCGGGCTGCT
CCGCATTATCACCGGACTTTCGGCGGAGGGCTTTGCTGCTTGTTGTTGTC
GAAGAATTTTTGTTGTCTTGGGTTGGTGAGCGCAGCAGTTCGGGCGATGA
TGCTGCCGCCTTTGCTGGTGTTGCTTCTGGTTTGTCTGGAGTTGAGCGTT
GTGCGTCTTGCTTCTGCTTTCGCTGCTCTGGCTGTTTCCGTTGCTCTTGT
TGCCTCCGCTTTTTGGTACTCTTCTTGCGTGCACCTGTAGACCCCGCAGC
CGCCGCCACCGCCGCCGCCGCGGCCGTTGACTCCTCGTCATCGTTCTTCT
TCCTTTTCCCGCTCTTGACAGGAACACTCTTGACACGTGTACCCTTGCCA
GCAACATCCTTGCCGCCGATCGAACCCTCGCGAGTGACATCG
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