mRNA_H-paniculata_contig5752.13318.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5752.13318.1
Unique NamemRNA_H-paniculata_contig5752.13318.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5752.13318.1 vs. uniprot
Match: A0A6H5JU15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU15_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.110e-6
Identity = 45/104 (43.27%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    4 EALVLGKVHADEISERLRKSEEEHCQAQQAQDDLRALVAAEETRRVSVERRLSEVKRTGETNVSIERXXXXXXXXXXGVAEQTRDDLAVAAAAAAGPALRAAAD 315
            E L   K  + E+  RL   E+E  +A  AQ+ LR  V        + ERRLSEVK  GE  + IER          G+AE++RD+LAVAAA+AAG ALR  A+
Sbjct: 1030 EDLEAAKESSGELEARLGSLEKECQEAHTAQERLRKWVEK------AGERRLSEVKHDGENVIGIERARRQSTERRLGLAERSRDELAVAAASAAGSALRQVAE 1127
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5752.13318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JU15_9PHAE3.110e-643.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5752contigH-paniculata_contig5752:4976..6034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.9828966-CDS-H-paniculata_contig5752:4976..53371622930620.9828966-CDS-H-paniculata_contig5752:4976..5337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 4977..5337 -
1691481376.139092-CDS-H-paniculata_contig5752:4976..53371691481376.139092-CDS-H-paniculata_contig5752:4976..5337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 4977..5337 -
1622930621.0013914-CDS-H-paniculata_contig5752:5927..60341622930621.0013914-CDS-H-paniculata_contig5752:5927..6034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 5928..6034 -
1691481376.1474087-CDS-H-paniculata_contig5752:5927..60341691481376.1474087-CDS-H-paniculata_contig5752:5927..6034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 5928..6034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5752.13318.1prot_H-paniculata_contig5752.13318.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5752 4977..6034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5752.13318.1

>prot_H-paniculata_contig5752.13318.1 ID=prot_H-paniculata_contig5752.13318.1|Name=mRNA_H-paniculata_contig5752.13318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
REALVLGKVHADEISERLRKSEEEHCQAQQAQDDLRALVAAEETRRVSVE
RRLSEVKRTGETNVSIERARRQSTERRLGVAEQTRDDLAVAAAAAAGPAL
RAAADAERARRESAERRLALVERSSVAAEAERARRLSTERRLDAAEREKA
ELSVAA
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mRNA from alignment at H-paniculata_contig5752:4976..6034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5752.13318.1 ID=mRNA_H-paniculata_contig5752.13318.1|Name=mRNA_H-paniculata_contig5752.13318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1059bp|location=Sequence derived from alignment at H-paniculata_contig5752:4976..6034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGAGGCGTTAGTATTGGGGAAGGTTCATGCGGACGAGATCTCTGAGCG
TTTGCGGAAATCGGAAGAGGAACATTGCCAAGCGCAACAGGCGCAAGATG
ATCTGAGGTGTTTGAGAGAGGAGTTTTTATATTTTTGGCGTTTGTTTAAG
CCATTTATTTTATTGGATGTCCGATTGTTGGCGTTGGAAAGGTGACCTCT
GATTTTCAGACCTTTCGAAAAATGAGCTACGGTAGTGAATGAAGAACGAG
ACGGCCTCGGAAATAAGTTTCCAATGCCCATGAAAGACGGCGTTAGTGAC
GTGTGGTGAAGGGTTGTCTTTTGTGGGTGTTGATTTATTTCCCGTAGTCT
TTTTCGTGTCTTTTTTGCATCTATTGGGTGATGGATTGAGTGGCTGAGTA
ATGGTTGAGAGATGATTGATGTTTCGAATGAGTCGGAGAGCCAGAGTGGA
ACTGTTTGTGGTGGATATGAACGATGAACACTCACGCAGACACAAAATAA
TACCACTTTTGCATGCCGACCGTGGGAAAGAGTACTTGACTACTCAGCTT
TGTAGCCACTGTACTTCGAATGTCGCTGGGGAGACAGTGCCTGTTTTTTT
CACACGGCGCTGTTCACTCTCCCTCGGATACATCCCTTCTCTCCTTTCCT
ATCGTATGTACCTCACCTCTTTCTCGTCATTTCCACCGCTTGTCCAGGGC
CTTGGTCGCCGCTGAAGAAACCAGGCGGGTCTCTGTCGAGCGCCGTTTGA
GTGAGGTCAAGCGCACGGGCGAGACCAACGTCAGCATCGAGCGCGCAAGG
CGTCAGTCGACCGAGCGCAGGCTGGGCGTGGCCGAACAAACGCGGGACGA
CCTCGCCGTCGCCGCTGCGGCCGCGGCTGGCCCGGCCCTCCGTGCAGCCG
CCGACGCCGAACGCGCGCGTCGCGAGTCAGCCGAGCGGCGCCTCGCTCTC
GTGGAGAGGTCGAGCGTCGCTGCCGAGGCCGAGCGTGCCCGCCGTTTGTC
GACCGAACGACGGCTGGACGCGGCGGAACGCGAGAAGGCGGAGCTTTCGG
TAGCTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5752:4976..6034-

>mRNA_H-paniculata_contig5752.13318.1 ID=mRNA_H-paniculata_contig5752.13318.1|Name=mRNA_H-paniculata_contig5752.13318.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig5752:4976..6034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGAGGCGTTAGTATTGGGGAAGGTTCATGCGGACGAGATCTCTGAGCG
TTTGCGGAAATCGGAAGAGGAACATTGCCAAGCGCAACAGGCGCAAGATG
ATCTGAGCGCGAGGCGTTAGTATTGGGGAAGGTTCATGCGGACGAGATCT
CTGAGCGTTTGCGGAAATCGGAAGAGGAACATTGCCAAGCGCAACAGGCG
CAAGATGATCTGAGGGCCTTGGTCGCCGCTGAAGAAACCAGGCGGGTCTC
TGTCGAGCGCCGTTTGAGTGAGGTCAAGCGCACGGGCGAGACCAACGTCA
GCATCGAGCGCGCAAGGCGTCAGTCGACCGAGCGCAGGCTGGGCGTGGCC
GAACAAACGCGGGACGACCTCGCCGTCGCCGCTGCGGCCGCGGCTGGCCC
GGCCCTCCGTGCAGCCGCCGACGCCGAACGCGCGCGTCGCGAGTCAGCCG
AGCGGCGCCTCGCTCTCGTGGAGAGGTCGAGCGTCGCTGCCGAGGCCGAG
CGTGCCCGCCGTTTGTCGACCGAACGACGGCTGGACGCGGCGGAACGCGA
GAAGGCGGAGCTTTCGGTAGCTGCTGGCCTTGGTCGCCGCTGAAGAAACC
AGGCGGGTCTCTGTCGAGCGCCGTTTGAGTGAGGTCAAGCGCACGGGCGA
GACCAACGTCAGCATCGAGCGCGCAAGGCGTCAGTCGACCGAGCGCAGGC
TGGGCGTGGCCGAACAAACGCGGGACGACCTCGCCGTCGCCGCTGCGGCC
GCGGCTGGCCCGGCCCTCCGTGCAGCCGCCGACGCCGAACGCGCGCGTCG
CGAGTCAGCCGAGCGGCGCCTCGCTCTCGTGGAGAGGTCGAGCGTCGCTG
CCGAGGCCGAGCGTGCCCGCCGTTTGTCGACCGAACGACGGCTGGACGCG
GCGGAACGCGAGAAGGCGGAGCTTTCGGTAGCTGCT
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