mRNA_H-paniculata_contig5752.13315.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5752.13315.1
Unique NamemRNA_H-paniculata_contig5752.13315.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5752.13315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5752contigH-paniculata_contig5752:2111..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size502
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5752.13315.1prot_H-paniculata_contig5752.13315.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5752 2111..2981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.9097123-CDS-H-paniculata_contig5752:2110..24671622930620.9097123-CDS-H-paniculata_contig5752:2110..2467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 2111..2467 -
1691481376.1110039-CDS-H-paniculata_contig5752:2110..24671691481376.1110039-CDS-H-paniculata_contig5752:2110..2467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 2111..2467 -
1622930620.925094-CDS-H-paniculata_contig5752:2858..29811622930620.925094-CDS-H-paniculata_contig5752:2858..2981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 2859..2981 -
1691481376.1228957-CDS-H-paniculata_contig5752:2858..29811691481376.1228957-CDS-H-paniculata_contig5752:2858..2981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5752 2859..2981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.9423468-UTR-H-paniculata_contig5752:2981..30021622930620.9423468-UTR-H-paniculata_contig5752:2981..3002Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5752 2982..3002 -
1691481376.1310244-UTR-H-paniculata_contig5752:2981..30021691481376.1310244-UTR-H-paniculata_contig5752:2981..3002Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5752 2982..3002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5752.13315.1

>prot_H-paniculata_contig5752.13315.1 ID=prot_H-paniculata_contig5752.13315.1|Name=mRNA_H-paniculata_contig5752.13315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MRKVISAGDGNVEEEIAGQSESEGGSEDSSRGMKSDQSAEETISITTAAA
AATTASASWSPSQRLPPAARKKTAKKQKRAEEGNENAAPPSPPQSSVAPP
RPKRGRKLLGAGAARCRTPKMKAKSAMGEMDAGGVVSVTGAVGGGFRTSM
GSVASSFVSG
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mRNA from alignment at H-paniculata_contig5752:2111..3002-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5752.13315.1 ID=mRNA_H-paniculata_contig5752.13315.1|Name=mRNA_H-paniculata_contig5752.13315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=892bp|location=Sequence derived from alignment at H-paniculata_contig5752:2111..3002- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTATCAAGAGGAGGAAACATGAGGAAGGTAATCTCGGCGGGTGACGG
CAACGTGGAGGAGGAAATCGCTGGTCAAAGCGAAAGTGAAGGTGGAAGCG
AAGACTCAAGCCGCGGTATGAAATCTGACCAGAGTGCTGAGGAGGTGAGA
GAGAACGAGATATAGGTTTCCGTTTTTTTGTTTTCGTGTTGTGTGCTGTA
CATGTTTATTTAGTGGGTGTTTCTTTTTGTGGGTGTTTTGTTTTTCTGTG
TTTCTTGTTTGAACAGTCCAATTGGGTTCTTGTTTGTTATAGATGCGCGA
TGGTACCATCAGCTCGATGTTTCTCGCCATCGTTTTTTACCTGGAGTAGC
ACGAGGAATCGCCGTTTTTTTCGCACCCCTCTAGATACCTCGCGTGTCTT
AAAGCCAAGTTTTTGGTTTCAAGATGTAATCTTTATGCATATTGAATAAC
GTAAACACTGATGCCCATGTTTTCTTTTCGTCTGTACTCTCCACCGTAAA
TCGTTTCCCGCCAAATCACTGTCCTCATCATTCAGACCATTAGCATCACC
ACCGCCGCCGCCGCTGCCACCACCGCCTCGGCTTCATGGTCCCCGTCGCA
ACGATTGCCGCCCGCCGCCCGCAAGAAGACCGCAAAAAAACAAAAAAGGG
CAGAAGAAGGCAATGAGAACGCAGCACCGCCATCGCCGCCGCAGTCGTCT
GTAGCACCCCCCCGTCCAAAGCGTGGTCGCAAGCTTCTTGGAGCAGGTGC
CGCCAGGTGCAGGACGCCGAAGATGAAGGCGAAGTCGGCGATGGGCGAGA
TGGACGCTGGCGGTGTGGTGTCAGTGACAGGGGCGGTGGGCGGCGGCTTC
AGGACTTCGATGGGGAGCGTTGCCTCGAGCTTCGTTTCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5752:2111..3002-

>mRNA_H-paniculata_contig5752.13315.1 ID=mRNA_H-paniculata_contig5752.13315.1|Name=mRNA_H-paniculata_contig5752.13315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig5752:2111..3002- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGGTAATCTCGGCGGGTGACGGCAACGTGGAGGAGGAAATCGC
TGGTCAAAGCGAAAGTGAAGGTGGAAGCGAAGACTCAAGCCGCGGTATGA
AATCTGACCAGAGTGCTGAGGAGATGAGGAAGGTAATCTCGGCGGGTGAC
GGCAACGTGGAGGAGGAAATCGCTGGTCAAAGCGAAAGTGAAGGTGGAAG
CGAAGACTCAAGCCGCGGTATGAAATCTGACCAGAGTGCTGAGGAGACCA
TTAGCATCACCACCGCCGCCGCCGCTGCCACCACCGCCTCGGCTTCATGG
TCCCCGTCGCAACGATTGCCGCCCGCCGCCCGCAAGAAGACCGCAAAAAA
ACAAAAAAGGGCAGAAGAAGGCAATGAGAACGCAGCACCGCCATCGCCGC
CGCAGTCGTCTGTAGCACCCCCCCGTCCAAAGCGTGGTCGCAAGCTTCTT
GGAGCAGGTGCCGCCAGGTGCAGGACGCCGAAGATGAAGGCGAAGTCGGC
GATGGGCGAGATGGACGCTGGCGGTGTGGTGTCAGTGACAGGGGCGGTGG
GCGGCGGCTTCAGGACTTCGATGGGGAGCGTTGCCTCGAGCTTCGTTTCG
GGAACCATTAGCATCACCACCGCCGCCGCCGCTGCCACCACCGCCTCGGC
TTCATGGTCCCCGTCGCAACGATTGCCGCCCGCCGCCCGCAAGAAGACCG
CAAAAAAACAAAAAAGGGCAGAAGAAGGCAATGAGAACGCAGCACCGCCA
TCGCCGCCGCAGTCGTCTGTAGCACCCCCCCGTCCAAAGCGTGGTCGCAA
GCTTCTTGGAGCAGGTGCCGCCAGGTGCAGGACGCCGAAGATGAAGGCGA
AGTCGGCGATGGGCGAGATGGACGCTGGCGGTGTGGTGTCAGTGACAGGG
GCGGTGGGCGGCGGCTTCAGGACTTCGATGGGGAGCGTTGCCTCGAGCTT
CGTTTCGGGA
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