mRNA_H-paniculata_contig5751.13314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5751.13314.1
Unique NamemRNA_H-paniculata_contig5751.13314.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: D7FYT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT8_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 3.010e-58
Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    4 FIQVDGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISII 360
            F  VDGVRRATPLLLVL+C+ELSD+VFAVDSIPAVFAVTKDPFIVYTSN+WAILNLRS FTLLA+AVEDL YLRPAVA+VL FVG K+GG++FGYD+STE SLGII  +L +GV  S+I
Sbjct:   71 FTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAVVLGFVGCKIGGDFFGYDVSTELSLGIITGVLAAGVAASLI 189          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: A0A6H5LB61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB61_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 3.370e-54
Identity = 93/119 (78.15%), Postives = 105/119 (88.24%), Query Frame = 1
Query:    4 FIQVDGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISII 360
            F  VDGVRRATPLLLVL+C+ELSD+VFAVDSIPAVFAVTKDPFIVYTSN+WAILNLRS FTLLA+AVEDL YLRPAVA VL FVG K+GGE+FGY++STE SL II  +L +GV  S+I
Sbjct:  226 FTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYNVSTELSLEIITGVLAAGVAASLI 344          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: A0A835YPV1_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.060e-46
Identity = 83/121 (68.60%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    4 FIQVDGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISIISK 366
            F  VDG+RRATPLLLVL+C+E SD+VFAVDSIPAVF VTKDP IVY+SN++AILNLRS +T+L+ AV DL YLRPAVA+VLAFVG KLG EYF   + T  SLGII  IL  GVG+S+  +
Sbjct:  163 FTMVDGMRRATPLLLVLVCVEASDLVFAVDSIPAVFGVTKDPLIVYSSNIFAILNLRSLYTVLSTAVGDLVYLRPAVALVLAFVGLKLGAEYFSVTVDTVLSLGIISTILAGGVGLSLYER 283          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: A0A835YKR2_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.550e-46
Identity = 82/119 (68.91%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    4 FIQVDGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISII 360
            F  VDGVRRATPLLLVL+C+ELSD+VFAVDSIPAVF  T+DPF+VYTSN++AI+NLRS +T+L+NAV DL YLRPAVA VLAFVG KL  EYFGY++ T  SLG+I  +L  GV +S++
Sbjct:  231 FTMVDGVRRATPLLLVLVCVELSDLVFAVDSIPAVFGCTRDPFLVYTSNIFAIVNLRSLYTVLSNAVGDLEYLRPAVAGVLAFVGAKLAAEYFGYEVDTLLSLGVISTLLGGGVALSLL 349          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: A0A7S2V8N4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N4_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.350e-46
Identity = 80/121 (66.12%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    4 FIQVDGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISIISK 366
            F  VDGV+ ATPLLL L+C+ELSD+VFAVDS+PAVF VTKDPFIVYTSN++AIL LRS +T+L+ AV +L YL+PAV IVL F+G KLG EY+GY+IST  SLG++ A+L  GVG+S+++K
Sbjct:  250 FTVVDGVKVATPLLLCLVCVELSDIVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLSKAVSELDYLQPAVGIVLGFIGSKLGLEYYGYEISTGVSLGVVAALLGGGVGLSVLTK 370          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: W7U074_9STRA (Integral membrane protein TerC n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U074_9STRA)

HSP 1 Score: 157 bits (396), Expect = 5.120e-44
Identity = 81/122 (66.39%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    4 FIQVDGVRR-ATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISIISK 366
            F +V G  R ATPLLLVL+C+ELSDVVFAVDS+PAVF VTKDPFIVYTSN++AIL LRS +T+LANA+ DLPYL+PAVA++L  VG KLG EYFG+++S   SLG+I ++L SGV  S+  K
Sbjct:  274 FTEVPGQGRVATPLLLVLICVELSDVVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLANAMVDLPYLKPAVALILGLVGLKLGAEYFGFEVSNAVSLGVITSLLGSGVWASLYLK 395          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: A0A7S2FP03_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FP03_9STRA)

HSP 1 Score: 152 bits (384), Expect = 6.690e-44
Identity = 74/117 (63.25%), Postives = 97/117 (82.91%), Query Frame = 1
Query:   16 DGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISIISK 366
            DGVR+ATPLLL L+C+ELSD+VFAVDS+PAVF VTKDPFIV+TSN++AI++LRS +T+++NAV DL YL+PAV +VLAFVG KLG  YF Y+IS   SLG+I  +L  G+ +S+  +
Sbjct:  120 DGVRKATPLLLALICLELSDLVFAVDSVPAVFGVTKDPFIVFTSNLFAIVSLRSLYTIISNAVNDLKYLQPAVGLVLAFVGAKLGAGYFDYEISNLISLGVISTLLSGGIALSLYER 236          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: A0A6V3AJS8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3AJS8_HETAK)

HSP 1 Score: 151 bits (381), Expect = 4.410e-42
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    4 FIQVDGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISIISK 366
            F  VDGVR+ATPL + L+ +ELSD+ FAVDS+PAVF VT DPFIVYTSN++AIL LRS FT+LA  V DLPYL PAV +VL F+G KLG +YFGY+I +  SL ++ A L  G+G S++ K
Sbjct:  239 FTVVDGVRKATPLFVCLMSVELSDIAFAVDSVPAVFGVTTDPFIVYTSNLFAILGLRSLFTVLAKLVADLPYLEPAVGVVLGFIGAKLGAQYFGYEIPSAVSLEVVLACLAGGIGASLLLK 359          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: A0A7S2Y1S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1S8_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.240e-41
Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    4 FIQVDGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISII 360
            F +V+GVR ATPLL+ L+CIELSD VFAVDSIPAV  VTKDPFIVY+SN++AI+ LRS + L+A AV DLPYLRPAVA+VLAFVG K+  E+F Y++ST  SL ++ A+L  G+ +S++
Sbjct:  230 FTKVNGVRHATPLLMCLVCIELSDFVFAVDSIPAVIGVTKDPFIVYSSNMFAIMALRSLYVLVAQAVTDLPYLRPAVALVLAFVGAKMIAEFFHYELSTAISLAVVAAVLGGGIALSVV 348          
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Match: A0A0V0HKY7_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HKY7_SOLCH)

HSP 1 Score: 142 bits (358), Expect = 5.700e-41
Identity = 68/117 (58.12%), Postives = 96/117 (82.05%), Query Frame = 1
Query:   16 DGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSNVWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDISTEASLGIIFAILCSGVGISIISK 366
            DGVR+ATPLLL +  IELSD+ FAVDSIPAVF VT+DPFIV+TSN++AIL LRS +TL++ ++ +L YL+P++ +VL F+GFK+  ++FGY +STEASLG++   L +GV +S++ K
Sbjct:   42 DGVRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFTSNLFAILGLRSLYTLISESMGELEYLQPSIGVVLGFIGFKMILDFFGYHVSTEASLGVVATCLSTGVLLSLVKK 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5751.13314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYT8_ECTSI3.010e-5878.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LB61_9PHAE3.370e-5478.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPV1_9STRA1.060e-4668.60Integral membrane protein TerC family-domain-conta... [more]
A0A835YKR2_9STRA2.550e-4668.91Integral membrane protein TerC family-domain-conta... [more]
A0A7S2V8N4_9STRA3.350e-4666.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U074_9STRA5.120e-4466.39Integral membrane protein TerC n=3 Tax=Monodopsida... [more]
A0A7S2FP03_9STRA6.690e-4463.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6V3AJS8_HETAK4.410e-4261.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y1S8_9STRA2.240e-4163.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0V0HKY7_SOLCH5.700e-4158.12Putative ovule protein n=1 Tax=Solanum chacoense T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5751contigH-paniculata_contig5751:2513..3467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.6e-45
Seed eggNOG ortholog2880.D7FYT8
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.membrane protein TERC
EggNOG OGs2QQNF@2759,COG0861@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size369
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.8508706-CDS-H-paniculata_contig5751:2512..26351622930620.8508706-CDS-H-paniculata_contig5751:2512..2635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5751 2513..2635 +
1691481376.090612-CDS-H-paniculata_contig5751:2512..26351691481376.090612-CDS-H-paniculata_contig5751:2512..2635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5751 2513..2635 +
1622930620.8652244-CDS-H-paniculata_contig5751:3221..34671622930620.8652244-CDS-H-paniculata_contig5751:3221..3467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5751 3222..3467 +
1691481376.1017406-CDS-H-paniculata_contig5751:3221..34671691481376.1017406-CDS-H-paniculata_contig5751:3221..3467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5751 3222..3467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5751.13314.1prot_H-paniculata_contig5751.13314.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5751 2513..3467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5751.13314.1

>prot_H-paniculata_contig5751.13314.1 ID=prot_H-paniculata_contig5751.13314.1|Name=mRNA_H-paniculata_contig5751.13314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
LFIQVDGVRRATPLLLVLLCIELSDVVFAVDSIPAVFAVTKDPFIVYTSN
VWAILNLRSTFTLLANAVEDLPYLRPAVAIVLAFVGFKLGGEYFGYDIST
EASLGIIFAILCSGVGISIISK*
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mRNA from alignment at H-paniculata_contig5751:2513..3467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5751.13314.1 ID=mRNA_H-paniculata_contig5751.13314.1|Name=mRNA_H-paniculata_contig5751.13314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=955bp|location=Sequence derived from alignment at H-paniculata_contig5751:2513..3467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTTATTCAGGTGGATGGCGTTCGCCGAGCAACTCCATTACTGCTTGT GCTGCTCTGCATCGAGCTGAGTGATGTGGTCTTCGCTGTGGACTCGATAC CCGCCGTGTTCGCCGTGACGAAGGTATCACCCATACTAGGCAGGTTTTGT GGTAACTTCCCGAACAAAGAGAAATCATTACGAGAGGTTGAATATGTCTC GTGTAATGAAAATATGGTGCTGAAATATCGCGGAACAGAGATTTTCGCCA GTGACGTTGTCACAGATCTGACGGTGTGCCGCCTGAAACTTTTTTGACTC ACGTGTATAAAATTTGGGTGGGTCAAATCATATTTTCGAGCATGTTTTTT CGCTTATCAGGCAATAATATGTTTTATATGTTTTTTTTGCTCGTGGGTGA AGAGTAATGTTGAAAACCCAGAGTGGAACAATGTCTGGGGCAAAAAGATG ATGTGATTGTGTCAAGGACCCTCCGAAACTTCTGCGACAGGAACATTCTC CCGAGATGATTTCAGTGCCTTGCCAGGCGGGTCTTGGGTGCCCTCAGATG GGGCGCCATCCATCTTGCTATGCGAGATTTTATGCACTGGCGTGTAGTGT GTATCATGAAATCCCCTGCGAGTATTCCAGGTCTTGCGCGTTAGCTCATC AGTCACATAATATACCTTTCCTGTGCCCGTGTCGTACCGTCACTTTTTTT GTGCCTCAGGACCCTTTCATTGTGTACACATCGAACGTATGGGCCATCCT CAATCTACGGAGCACGTTTACTCTGCTCGCGAACGCAGTGGAAGACTTGC CCTACCTAAGGCCTGCTGTGGCCATCGTACTTGCGTTCGTCGGCTTCAAA TTAGGGGGAGAATATTTCGGATATGACATATCTACTGAGGCATCATTGGG GATAATATTTGCAATATTATGTAGTGGGGTGGGTATCAGTATCATTTCGA AATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5751:2513..3467+

>mRNA_H-paniculata_contig5751.13314.1 ID=mRNA_H-paniculata_contig5751.13314.1|Name=mRNA_H-paniculata_contig5751.13314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig5751:2513..3467+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTTATTCAGGTGGATGGCGTTCGCCGAGCAACTCCATTACTGCTTGT
GCTGCTCTGCATCGAGCTGAGTGATGTGGTCTTCGCTGTGGACTCGATAC
CCGCCGTGTTCGCCGTGACGAAGCTTTTTATTCAGGTGGATGGCGTTCGC
CGAGCAACTCCATTACTGCTTGTGCTGCTCTGCATCGAGCTGAGTGATGT
GGTCTTCGCTGTGGACTCGATACCCGCCGTGTTCGCCGTGACGAAGGACC
CTTTCATTGTGTACACATCGAACGTATGGGCCATCCTCAATCTACGGAGC
ACGTTTACTCTGCTCGCGAACGCAGTGGAAGACTTGCCCTACCTAAGGCC
TGCTGTGGCCATCGTACTTGCGTTCGTCGGCTTCAAATTAGGGGGAGAAT
ATTTCGGATATGACATATCTACTGAGGCATCATTGGGGATAATATTTGCA
ATATTATGTAGTGGGGTGGGTATCAGTATCATTTCGAAATAAGACCCTTT
CATTGTGTACACATCGAACGTATGGGCCATCCTCAATCTACGGAGCACGT
TTACTCTGCTCGCGAACGCAGTGGAAGACTTGCCCTACCTAAGGCCTGCT
GTGGCCATCGTACTTGCGTTCGTCGGCTTCAAATTAGGGGGAGAATATTT
CGGATATGACATATCTACTGAGGCATCATTGGGGATAATATTTGCAATAT
TATGTAGTGGGGTGGGTATCAGTATCATTTCGAAATAA
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