mRNA_H-paniculata_contig5750.13312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5750.13312.1 vs. uniprot
Match: D7FK98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK98_ECTSI) HSP 1 Score: 431 bits (1108), Expect = 7.920e-133 Identity = 317/817 (38.80%), Postives = 382/817 (46.76%), Query Frame = 1
Query: 304 MCWDGRSSLWVFGGQGANTSTADSSRTHQGVKIRTLAKRTCFNDFFEFDTRTSEWHDHVQAGVCPTSRRGHSATLVIGRRSIHSTAPPISTPSTFGDARHCIGENSNATSPRCSGTSMFDEGGEAQVGKPLPPRRSAGESGAHRDESPLSPAGARTRGCRRGVEGADVGDHS--------------------GRKNKDCTSREMFVIGGAGTDPIRNMEVVYPQLWIFDFDARSWSCVEAGDGSGSRTGGGGV---------GAGPPAVFDHTATRVGNQHIVVIGGAMVGTALNSEVYILTLNTLQWSILDPHPVGFRAPSIHGHTAVEDPLTPGRLIVFGGRGGTHWNTEVLTFSTNKSLWSVAACESSAETPSD---CGKTTSKIGD-----------------GSLLPTGWGSENGYAGPAGTDRKSPPNPRRSTYDAEDERGSSDSRNVHEPQANSRSTTGRSLQFSSSSSFFQQQAAMPHQRNGHTCFVWDPRGTALSA----------------------GLPISSSCG---RGKNNKVALATGNTAETGTRTGKMKEVRSLLKNTSESKYAGGAGQGREHSPKRSRWEGVSQKGRADGRGAHQADDSLLPPCIITFGGSARRMGGGYAESVLHILEDAPAESNNKDKDKRGEGLGHPSMSKLFGFIDPLGSRKSSLSRFQTCTKSVLMNVHSIRSLGKERLDFGDRHNEGDLSYIEVKVRSLIMG----ETETDGGPNGELNKESKKPDRKGEVVASQRASA--PHETSVRTLGVFPSGYEQ--MKAFLADARPVKKSTTLRGGSHHAH 2508
MCWDG SSLWVFGGQGA TS ADSSRTHQGVKIRTLA+RTCFNDFFEFDT+ + AG P H HC + AT + G + G RR+ ES H + +P SP R +R EG GR + C SREMFVIGGAGTDPIRNMEVVYPQLWIFDF+ R+W+CVEA G GPPAVFDHTAT G HIVVIGG MVG ALNS+VY+L L+TLQWS L+PHP+GF AP+IHGHTAVEDP GRLI+FGGRGG WNT+VLTF K+LWS+A C+ AE P D +T++ G G P+ GS+ A PA PP+P + D R HEP + +R+GHTCFVWDPR AL+ GLP+S G RG + R + D+SL PCI+TFGGSA R GGGYA + LH+LE E N+ D D G PS L + K + ++FQ+ T SVL+ VHS+R LG E+L FGD +N DLSYI++KV+S+++G E DG +K S G A RA PH + R LG FP+GYEQ +KAFLADARP + +R S AH
Sbjct: 1 MCWDGLSSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTK------RLVAGPRPGGSLPHLEAWA-----------------------HCDPRSRAATRD-------LNLGNDGASGY----RRADSESVGHGNSTPRSPGRITPR--KRSGEGEGXXXXXXXXXXXXXXXXXXXXXXXXMGRAS--CESREMFVIGGAGTDPIRNMEVVYPQLWIFDFNRRTWTCVEAAGXXXXXXXXXXXXXXXXXXXXGPGPPAVFDHTATLAGGTHIVVIGGVMVGRALNSQVYMLALDTLQWSTLEPHPLGFSAPAIHGHTAVEDPAHAGRLIIFGGRGGKSWNTQVLTFQFRKNLWSMAVCDM-AEPPPDELNANQTSAARGKRSSASPLRVTILDNPVIGRTEPSRGGSDEPKAAPA------PPSPN----------NTDDERPQHEPLG---------------------EPGQQAKRHGHTCFVWDPRQAALACNDGGGGXXXXXXXXXXXXDGARGLPVSPKRGSQNRGSGRSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRNRRTPTPSSPTDESLPHPCIVTFGGSALRTGGGYARAALHVLETPAPEDNDSDNDGGGRKASSPSTGILASLELAADAPKQTFNKFQSFTNSVLLKVHSLRQLGNEQLTFGDSYNPEDLSYIDLKVQSVVLGVGGRTLEADGSDEDRNSKTSPAATTAGGSKAKTRADVKPPHPGAGR-LGSFPTGYEQARVKAFLADARPA--NARIRPVSAPAH 732
BLAST of mRNA_H-paniculata_contig5750.13312.1 vs. uniprot
Match: A0A6H5JRA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA7_9PHAE) HSP 1 Score: 388 bits (997), Expect = 1.410e-115 Identity = 314/881 (35.64%), Postives = 389/881 (44.15%), Query Frame = 1
Query: 313 DGRSSLWVFGGQGANTSTADSSRTHQGVKIRTLAKRTCFNDFFEFDTRTSEWHDHVQAGVCPTSRRGHSATLVIGRRSIHSTAPPISTPSTFGDARHCIGENSNATSPRCSGTSMFDEGGEAQVGKPLPPRRSAGESGAHRDESPLSPAGARTRGCRRGVEGADVGDHSGRKNKDCTSREMFVIGGAGTDPIR-----------------------------------------------NMEVVYPQLWIFDFDARSWSCVEAGDGSGSRTGG--------GGVGAGPPAVFDHTATRVGNQHIVVIGGAMVGTALNSEVYILTLNTLQWSILDPHPVGFRAPSIHGHTAVEDPLTPGRLIVFGGRGGTHWNTE-----VLTFSTNKSLWSVAACESSAETPSDCGKTTSKIGDGS-------------------LLPTGWGSENGYAGPA-----GTDRKSPPN-PRRSTYDAEDERGSSDSRNVHEPQANS-------------RSTTGRSLQFSSSSSFFQQQAAMPHQRNGHTCFVWDPRGTALSAGLPISSSCGRGKNNKVALATGNTAETGTRTGKMKEVRSLLKNTSESKYAGGAGQGREHSPKRSR--------------------WEGVSQKGRADGRGAHQADDSLLPPCIITFGGSARRMGGGYAESVLHILEDAPAES-------NNKDKDKRGEGLGHPSMSKLFGFIDPLGSRKSSLSRFQTCTKSVLMNVHSIRSLGKERLDFGDRHNEGDLSYIEVKVRSLIMG----ETETDGGPNGE----------LNKESKKPDRK--GEVVASQ--------RASAPHETSVRTLGVFPSGYEQMKAFLADARPVKKSTTLRGGSHHAH 2508
DG SSLWVFGGQGA TS ADSSRTHQGVKIRTLA+RTCFNDFFEFDT+ +D RR S ++ G + S P TP R GE R +G GG R +G+ G G G+ SREMFVIGGAGTDPIR NMEVVYPQLWIFDF+ R+W+CVEA G G+ G G GPPAVFDHTAT G HIVVIGG MVG ALN +VY+L L+TLQWSIL+PHP+GF AP+IHGHTAVEDP GRLI+FGGRGG +WNT+ VLT K+LWS+A C+ P + S G P+ GS+ A PA TD + P N PRR + S ++ A+ + ++ S A MPHQR+GHTCFVWDPR AL+ + G G S G G R+ SPKR R + R + D+SL PCI+TFGGSA R GGGYA + LH+LE E N+ DKD G PS L G+ K + ++FQ+ T SVL+ VHS+R LG E+L FGD +N DLSYI++KV+S+++G E DG + + + KP G + + Q R + P + G F SG+ Q+KAF+ADARP + +R S AH
Sbjct: 27 DGLSSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTKRVLGNDSASG-----HRRADSESVGHGNSTPRS--PGRITP------RKWRGEGEGGR--RGAG------GGXXXXXXXXXXXRESGDGGM----------------------GRAFGE----------SREMFVIGGAGTDPIRPPAAFVVAPRATSAGNLRMAAQPCLYTSVLPKTRSSPNPPYVRYATKNMEVVYPQLWIFDFNRRTWTCVEAAGGGGAXXXGISKGNIPSAAAGPGPPAVFDHTATLAGGTHIVVIGGVMVGRALNGQVYMLALDTLQWSILEPHPLGFSAPAIHGHTAVEDPAHAGRLIIFGGRGGKNWNTQGGNGKVLTCQFRKNLWSMAVCDMGEPPPDELNANQSSTSKGKRSSASPLRVTILDNPVIGKTQPSRGGSDEPIAAPATPSPNNTDDERPQNEPRREPGQQPKVKNPPPSSSLAGILASGGLKXXXXXXXXXXXXXXXXXXKAATEHSAAAMVAMMPHQRHGHTCFVWDPRQAALACNGG-GAEAGDGXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXRSNCGAGGGASRKSSPKRPRGGENXXXXPLPSSRKXXXXXXXXXRSRNRRTPMPSSPTDESLPHPCIVTFGGSALRTGGGYARAALHVLETPAPEDGGRGNDDNDSDKDGGGRKGSSPSTGILASLESAAGAPKQTFNKFQSFTNSVLLKVHSLRQLGNEQLSFGDSYNPDDLSYIDLKVQSVVLGVGGRTLEADGSDEDRNSTTAEGSRAIKRANVKPPHPCAGRLGSYQSIFSDSKTRVTQPSVCNTTRAGGFWSGFPQVKAFIADARP--PNARIRPVSAPAH 848
BLAST of mRNA_H-paniculata_contig5750.13312.1 vs. uniprot
Match: A0A8J2SDP5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDP5_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 3.380e-15 Identity = 108/415 (26.02%), Postives = 148/415 (35.66%), Query Frame = 1
Query: 94 WRKLDLAA----GSPNPPMRINSASAFLEGELYLFGGLNAGPSKSMWALNVRERRWRPVPALKGAPPAPRQGHTMCWDGRS-SLWVFGGQGANTSTADSSRTHQGVKIRTL-----AKRTCFNDFFEFDTRTSEWHDHVQAGVCPTSRRGHSATLVIGRRSIHSTAPPISTPSTFGDARHCIGENSNATSPRCSGTSMFDEGGEAQVGKPLPPRRSAGESGAHRDESPLSPAGARTRGCRRGVEGADVGDHSGRKNKDCTSREMFVIGGAGTDPIRNMEVVYPQLWIFDFDARSW------SCVEAGDGSGSRTGGGG-----VGAGPPAVFDHTATRVGNQHIVVIGGAMVGTA---------LNSEVYILTLNTLQWSILDPHPVGFRAPSIHGHTAVEDPLTPGRLIVFGGR 1248
WR +LA + PPMR ++AS L ++Y+FGGL AG S +WAL+ RW + PPA R T+ D + ++++FGG G D + GV TL A+R+ F+D + FD W + +CP RRGH+AT CSG + +E E V + L GA + M V+GGA DP + +W D + R W EA T G VG + D + + +V G G +N V L L TL WS LD V ++ GH A E PL PG L+V GGR
Sbjct: 2 WRAANLACCREPHNGEPPMRTHAASCVLGSKVYVFGGLGAGASNQLWALDTILHRWERLLPPGPKPPA-RSAATLAGDDDAHAVYLFGGLGR--VKRDYLKKRDGVPGATLRTQLHAQRSMFSDVWRFDGTAKRWEELTFIHMCPAPRRGHTATY-------------------------------------CSGRVLVEEPEETSVDGTEATSFTEXXXXXXXXXXXLVEEGA------------------------LLPKYMVVVGGAVPDPKGFEHIAGTPVWALDLNRRKWLHLPTTGYAEAAYRFEHTTTKLGERLFVVGGMTMPLCDGQDWKPPQGNDLVFGAMRWGRVVDDVACCVEINQCVACLDLETLVWSRLD---VDGPPLAVRGHAACESPLRPGELLVVGGR 349
BLAST of mRNA_H-paniculata_contig5750.13312.1 vs. uniprot
Match: A0A7S2XVA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVA1_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 6.320e-6 Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 847 REMFVIGGAGTDPIRNMEVVYPQLWIFDFDARSWSCVEAGDGSGSRTGGGGVGAGPPAVFDHTATRVGNQHIVVIGG 1077
RE+ V+GGAG D ++ +EV++ + W+F+ DA SW V G PA F+HTAT + + +IGG
Sbjct: 74 REIIVVGGAGPDSVKGVEVIFAETWLFNLDAHSWRQVAT------------TGPPSPARFEHTATLI-KSTLFLIGG 137
BLAST of mRNA_H-paniculata_contig5750.13312.1 vs. uniprot
Match: UPI000E1C3E39 (acyl-CoA-binding domain-containing protein 6-like isoform X2 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI000E1C3E39) HSP 1 Score: 57.4 bits (137), Expect = 6.510e-5 Identity = 34/132 (25.76%), Postives = 59/132 (44.70%), Query Frame = 1
Query: 916 LWIFDFDARSWSCVEAGDGSGSRTGGGGVGAGPPAVFDHTATRVGNQHIVVIGGAMVGTALNSEVYILTLNTLQWSILDPHPVGFRAPSIHGHTAVEDPLTPGRLIVFGGRGGTHWNTEVLTFSTNKSLWSV 1311
L I D + W V+ G G GP +DH+A +Q++++ GG+ T S++Y+L L T++WS D S H T +++ + GG +T+ + + +K +WSV
Sbjct: 178 LHILDLETMMWEEVKTGKG------------GPAPRYDHSAAVYADQYLLIFGGSSHSTCF-SDIYLLDLQTMEWSQPDTQGAHINPRSGHAGTMIDE-----NWYIVGGGDNASGSTDTIMMNASKFVWSV 291 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5750.13312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5750.13312.1 >prot_H-paniculata_contig5750.13312.1 ID=prot_H-paniculata_contig5750.13312.1|Name=mRNA_H-paniculata_contig5750.13312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=915bp MAATFKRKNGDDNHGWCSPTARALSHVCRKRWRKLDLAAGSPNPPMRINSback to top mRNA from alignment at H-paniculata_contig5750:1223..10862+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5750.13312.1 ID=mRNA_H-paniculata_contig5750.13312.1|Name=mRNA_H-paniculata_contig5750.13312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9640bp|location=Sequence derived from alignment at H-paniculata_contig5750:1223..10862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5750:1223..10862+ >mRNA_H-paniculata_contig5750.13312.1 ID=mRNA_H-paniculata_contig5750.13312.1|Name=mRNA_H-paniculata_contig5750.13312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5490bp|location=Sequence derived from alignment at H-paniculata_contig5750:1223..10862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |