prot_H-paniculata_contig575.13311.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig575.13311.1
Unique Nameprot_H-paniculata_contig575.13311.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length227
Homology
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: D8LKC5_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKC5_ECTSI)

HSP 1 Score: 347 bits (889), Expect = 3.410e-119
Identity = 163/182 (89.56%), Postives = 173/182 (95.05%), Query Frame = 0
Query:   45 QLRMARDPDASIALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELAFEWSTQFN 226
            Q+ MA DPDASIALPFTPRPE LNGELVGDVGFDPLNFSEEGDL KYRRAELKHGRVAML VVG IWQE+SVLPGLGY+PTKNLFQAVADAPW+A+LQ+ +FVGIFDLQSTKYD+EQGRVPGDIGFDPLKLS DGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLEL +EWSTQF+
Sbjct:   35 QVSMAADPDASIALPFTPRPENLNGELVGDVGFDPLNFSEEGDLAKYRRAELKHGRVAMLGVVGAIWQEFSVLPGLGYTPTKNLFQAVADAPWLAVLQVVVFVGIFDLQSTKYDIEQGRVPGDIGFDPLKLSKDGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELTYEWSTQFH 216          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: A0A835YVN7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN7_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.280e-72
Identity = 110/176 (62.50%), Postives = 135/176 (76.70%), Query Frame = 0
Query:   51 DPDASIALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELAFEWSTQFN 226
            D + S++LPF  +P  LNGELVGDVGFDPL FS++GDL K+RRAELKHGRVAML V+G+I QE   + G  +  TKNLF AV DA  +A+LQ+F FVG +D+ +TK++   GRVPGDIGFDPL+LS DGINE WAL+ELKHGRLAM AM A LIQ L+ P+KS LE  F+W+  F 
Sbjct:   44 DDERSVSLPFAAKPANLNGELVGDVGFDPLRFSDKGDLAKFRRAELKHGRVAMLGVLGSILQESYSVQGPDFKTTKNLFAAVTDAGPLALLQVFAFVGAYDVATTKWEEANGRVPGDIGFDPLRLSKDGINETWALSELKHGRLAMIAMFAFLIQTLVEPNKSILEQTFDWARSFG 219          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: A0A7S1U1W6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1W6_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.330e-56
Identity = 94/181 (51.93%), Postives = 119/181 (65.75%), Query Frame = 0
Query:   42 GLDQLRMARDPDASIALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELAFEWS 222
            G  Q+ MA D  A  A+PF  +PE LNGEL GD+GFDP  FS+  DL   R AELKHGRV MLA  G + QE + L      P+ N  +A+  AP + I+QI + +G  + Q++ Y    GRVPGD GFDPLKLS +GINEKWAL ELKHGRLAMWA A +L+Q L+ PD   ++  F+W+
Sbjct:   24 GRGQMAMAADKSA--AIPFADKPENLNGELAGDIGFDPFRFSDSRDLAYLREAELKHGRVCMLAATGILTQEVTRLSDA--FPSTNCLEALKTAPTLGIIQIILVIGALEAQNSNY---VGRVPGDRGFDPLKLSENGINEKWALMELKHGRLAMWATAGMLVQTLVNPDVPIIQQTFDWA 197          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: W7TNE9_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNE9_9STRA)

HSP 1 Score: 184 bits (467), Expect = 4.380e-51
Identity = 92/166 (55.42%), Postives = 121/166 (72.89%), Query Frame = 0
Query:   55 SIALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELAFE 220
            SIALPF  +P+ LNGEL GDVGFDP  FS++GD+ K+R AELKHGRVAMLAVVG + QE  +       P+KN  +A+  AP + +LQ+F+F+G +D+ ++K++   GRVPGDIGFDPL+LSADG+ E W +AELKHGRLAM A  A ++Q   + DK  LE  F+
Sbjct:   44 SIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKHGRVAMLAVVGVLVQE--LYQWNENFPSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFE---GRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQAS-ISDKPILEQTFD 203          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: K8YRV9_NANGC (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRV9_NANGC)

HSP 1 Score: 171 bits (433), Expect = 3.690e-50
Identity = 87/171 (50.88%), Postives = 115/171 (67.25%), Query Frame = 0
Query:   55 SIALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELAFEWSTQF 225
            SIALPF  +P+ LNGEL GDVGFDP  FS++GD+ K+R AELKH  V +L      W E          P+KN  +A+  AP + +LQ+F+F+G +D+ ++K++   GRVPGDIGFDPL+LSADG+ E W +AELKHGRLAM A  A ++Q   + DK  LE  FEW+  F
Sbjct:   44 SIALPFAAKPQNLNGELAGDVGFDPFKFSDKGDVAKFRVAELKH--VGVLVQELYQWNENF--------PSKNFLEALKTAPALGLLQLFVFLGAYDVTTSKFE---GRVPGDIGFDPLRLSADGLRENWQVAELKHGRLAMIAFLAFVVQAS-ISDKPILEQTFEWAKSF 200          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: A0A0G4GWW0_VITBC (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4GWW0_VITBC)

HSP 1 Score: 162 bits (409), Expect = 3.730e-46
Identity = 79/173 (45.66%), Postives = 109/173 (63.01%), Query Frame = 0
Query:   50 RDPDASIALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELAFEWS 222
            +D + S+ALPF  +P+ LNGELVGDVGFDP  F+   DL + R  ELKHGRV MLA +G + Q  S        P+KN  +A   AP + ++Q+ + +   +  +  +    GR+PGD GFDPL+LS +GI E W L ELKHGRLAM     +++QQLL PD+S +E+   W+
Sbjct:   45 QDIEKSVALPFARKPDNLNGELVGDVGFDPFGFTNNQDLARMREVELKHGRVCMLATLGVLVQ--STYRWNEAFPSKNFLEAPLTAPTLGMIQLLLVISAIEYYNGNF---VGRIPGDRGFDPLRLSREGIRENWQLMELKHGRLAMIGFLGMVVQQLLRPDESIVEMTINWA 212          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: A0A8J5XNK9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XNK9_DIALT)

HSP 1 Score: 150 bits (380), Expect = 3.810e-42
Identity = 82/178 (46.07%), Postives = 108/178 (60.67%), Query Frame = 0
Query:   46 LRMARDPDASIALPFTPRPEKLNGELVGDVGFDPLNFSEEGD---LKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELAFE 220
            +RM  + D S A+PF  +P+ LNGEL+ D+GFDP  F+ +     + K+R AELKHGRV MLAV+G + QE             N   A+A  P + ILQI +  GI + ++  Y    GR+PGDIGFDPL LSA GI E WA+AE+KHGRLAM A  A  +Q + V  +S L   F+
Sbjct:   26 VRMVTEDDLSAAIPFVAKPKNLNGELLCDIGFDPAGFTNKASPEKIAKFREAELKHGRVCMLAVLGFVAQELIAPYQAAPFNEVNPINAIAAVPALGILQIIVLCGIIENRTQGY---AGRIPGDIGFDPLGLSAGGIKEDWAIAEIKHGRLAMIAFLAFQVQ-IKVSGESVLSTTFD 199          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: A0A0G4FN06_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FN06_9ALVE)

HSP 1 Score: 141 bits (356), Expect = 8.450e-38
Identity = 69/156 (44.23%), Postives = 100/156 (64.10%), Query Frame = 0
Query:   67 LNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPLELAFEWS 222
              G+L GD+G+DPLN +E GD+ + R AEL+HGR+AMLA +G + Q         + P+KN   A+  AP + I QIF  +G ++ ++  Y+   GR+PGD GFDPL LS +GI  +W  +EL+HGRLAM+    +L+QQLL P +S +E    W+
Sbjct:   92 FGGDLAGDLGWDPLNLAEGGDIVQLREAELRHGRLAMLATLGVLVQSTYRWDSENF-PSKNFLDALFTAPPLGIFQIFAAIGWWEFKNKDYE---GRIPGDRGFDPLGLSKNGIRPQWEKSELEHGRLAMFMFLGMLVQQLLSPKESIVEQTISWT 243          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: A0A7S0QK90_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QK90_9CRYP)

HSP 1 Score: 136 bits (343), Expect = 2.800e-36
Identity = 76/171 (44.44%), Postives = 105/171 (61.40%), Query Frame = 0
Query:   53 DASIALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDM-------EQGRVPGDIGFDPLKLSAD-GINEKWALAELKHGRLAMWAMAAILIQQLLVPDKSPL 215
            D S A+PF  RPEKL+G L GDVGFDPL  S   D+K  R +ELKHGR+ MLA  G + QE+  LPG  +S  K   +A + AP   ++QI + +G+ +L S ++ M       +  R PG++GFDPL LSAD     ++ LAELKH RLAM A+   + Q ++   K+P+
Sbjct:   48 DKSKAVPFLSRPEKLDGTLAGDVGFDPLGLSNYWDIKWMRESELKHGRICMLATAGILVQEFVHLPGAAFSK-KVALEAWSSAPRGGMIQILVAIGLIELVSNRFAMTATDMFADPNRKPGNLGFDPLNLSADESALRRYELAELKHSRLAMIAIGGFVHQAIIT--KTPV 215          
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Match: A0A7S1TMR6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMR6_9RHOD)

HSP 1 Score: 134 bits (337), Expect = 9.980e-36
Identity = 73/183 (39.89%), Postives = 103/183 (56.28%), Query Frame = 0
Query:   40 YIGLDQLRMARDPDASI--------------ALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGRVAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIFDLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMAAILIQQLL 208
            ++G+  L  AR   AS+              A+PF  +P+ L+G L GD GFDPL  S+  +LK  R AELKHGR+ MLA +G + QE   LPG  +   K+  QA+   P  + +QI  F+ I +L + + + +    PGD GFDPL L   G+ E++ L E+K+GRLAM A    L QQL+
Sbjct:    4 FVGVSALSTARVQRASVSRSSATVVRMAKSQAIPFLEKPDTLDGSLAGDAGFDPLRLSKYLNLKYLRAAELKHGRICMLATLGWVVQEIVRLPGPMFQE-KHALQAIYKVPLASWVQIIAFISIIELVTFRSNYDDSSAPGDYGFDPLNLGKSGVIERYQLNEIKNGRLAMIAFMGFLFQQLV 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig575.13311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKC5_ECTSI3.410e-11989.56Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835YVN7_9STRA1.280e-7262.50Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S1U1W6_9STRA3.330e-5651.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TNE9_9STRA4.380e-5155.42DNA-directed RNA polymerase subunit n=1 Tax=Nannoc... [more]
K8YRV9_NANGC3.690e-5050.88Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A0G4GWW0_VITBC3.730e-4645.66Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
A0A8J5XNK9_DIALT3.810e-4246.07Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0G4FN06_9ALVE8.450e-3844.23Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S0QK90_9CRYP2.800e-3644.44Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S1TMR6_9RHOD9.980e-3639.89Hypothetical protein n=1 Tax=Erythrolobus australi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 64..206
e-value: 5.9E-36
score: 124.4
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 58..224
e-value: 2.8E-39
score: 136.8
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 51..218
NoneNo IPR availablePANTHERPTHR21649:SF7CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTICcoord: 51..218
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 101..122
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..13
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..150
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 151..226
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 123..127
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 14..22
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 49..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig575contigH-paniculata_contig575:31530..33631 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig575.13311.1mRNA_H-paniculata_contig575.13311.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig575 31294..34603 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig575.13311.1 ID=prot_H-paniculata_contig575.13311.1|Name=mRNA_H-paniculata_contig575.13311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MCVCFLFLLSSSQRDFIVIQPYSQLICCTLFTRLFFCGGYIGLDQLRMAR
DPDASIALPFTPRPEKLNGELVGDVGFDPLNFSEEGDLKKYRRAELKHGR
VAMLAVVGTIWQEYSVLPGLGYSPTKNLFQAVADAPWIAILQIFIFVGIF
DLQSTKYDMEQGRVPGDIGFDPLKLSADGINEKWALAELKHGRLAMWAMA
AILIQQLLVPDKSPLELAFEWSTQFN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR001344Chloro_AB-bd_pln