mRNA_H-paniculata_contig57427.13304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57427.13304.1
Unique NamemRNA_H-paniculata_contig57427.13304.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.280e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:   83 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 139
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5KGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.280e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:   11 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 67
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.420e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:  147 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 203
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.390e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:   83 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 139
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.460e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:   11 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 67
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5K4T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.460e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:  180 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 236
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.560e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:  290 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 346
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.560e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:  262 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 318
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.610e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:  638 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 694
[Close]
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.610e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 SNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRAVARQAHNP 174
            S +PA+  ADL P+REDE+  + PV  A+GS++W+S  +RPD++ AVRAVAR AH P
Sbjct:  514 SRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57427.13304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH1_9PHAE1.280e-1154.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGY9_9PHAE1.280e-1154.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRS6_9PHAE1.420e-1154.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE2.390e-1154.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCA5_9PHAE2.460e-1154.39Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4T5_9PHAE4.460e-1154.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE4.560e-1154.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE4.560e-1154.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K164_9PHAE4.610e-1154.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K274_9PHAE4.610e-1154.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57427contigH-paniculata_contig57427:572..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size187
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930619.2365396-CDS-H-paniculata_contig57427:571..7571622930619.2365396-CDS-H-paniculata_contig57427:571..757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57427 572..757 +
1691481375.2438428-CDS-H-paniculata_contig57427:571..7571691481375.2438428-CDS-H-paniculata_contig57427:571..757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57427 572..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57427.13304.1prot_H-paniculata_contig57427.13304.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57427 572..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57427.13304.1

>prot_H-paniculata_contig57427.13304.1 ID=prot_H-paniculata_contig57427.13304.1|Name=mRNA_H-paniculata_contig57427.13304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
ESNLPASQQADLRPRREDEDLSDKPVHSAVGSLIWLSGMTRPDIASAVRA
VARQAHNPTGA*
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mRNA from alignment at H-paniculata_contig57427:572..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57427.13304.1 ID=mRNA_H-paniculata_contig57427.13304.1|Name=mRNA_H-paniculata_contig57427.13304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig57427:572..757+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTCTAACCTTCCTGCGTCTCAGCAGGCAGATCTTAGGCCTAGGAGGGA
GGATGAGGATTTGTCTGACAAGCCTGTGCACTCGGCTGTTGGGAGTTTGA
TATGGTTAAGTGGTATGACGAGGCCCGACATAGCCAGTGCAGTACGGGCA
GTAGCAAGGCAAGCCCACAATCCGACGGGGGCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig57427:572..757+

>mRNA_H-paniculata_contig57427.13304.1 ID=mRNA_H-paniculata_contig57427.13304.1|Name=mRNA_H-paniculata_contig57427.13304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig57427:572..757+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTCTAACCTTCCTGCGTCTCAGCAGGCAGATCTTAGGCCTAGGAGGGA
GGATGAGGATTTGTCTGACAAGCCTGTGCACTCGGCTGTTGGGAGTTTGA
TATGGTTAAGTGGTATGACGAGGCCCGACATAGCCAGTGCAGTACGGGCA
GTAGCAAGGCAAGCCCACAATCCGACGGGGGCGTAGGAGTCTAACCTTCC
TGCGTCTCAGCAGGCAGATCTTAGGCCTAGGAGGGAGGATGAGGATTTGT
CTGACAAGCCTGTGCACTCGGCTGTTGGGAGTTTGATATGGTTAAGTGGT
ATGACGAGGCCCGACATAGCCAGTGCAGTACGGGCAGTAGCAAGGCAAGC
CCACAATCCGACGGGGGCGTAG
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