mRNA_H-paniculata_contig5742.13303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 9.600e-20 Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
V+ K +Y RK + G + K R VA+GF Q EGV + E +SP P+ SIR+L A A D +L HFDAEQAF+++++DE V I + G V +L +++YGL QA
Sbjct: 162 VISAKWVYSRKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLHPGCGALSGKVVRLRRSLYGLKQA 272
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 6.390e-19 Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
V+ K +Y K + G + K R VA+GF Q EGV + E +SP P+ SIR+L A A D +L HFDAEQAF+++++DE V I +P G V +L + +YGL QA
Sbjct: 823 VISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQA 933
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A3S3PZ35_9MAGN (Zinc finger, CCCH-type n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3PZ35_9MAGN) HSP 1 Score: 90.5 bits (223), Expect = 8.870e-19 Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQH--FPGAVGKLNKAIYGLVQA 342
VVG K +YK K+ DG +E+ K R VA+GF Q+EG+ ++E +SP A+IR++L A A + ++R D + AFL + E V +E P R H +P V L KA+YGL QA
Sbjct: 1029 VVGCKWVYKTKLRADGSLERLKARLVAKGFNQVEGIDFSETFSPVVKPATIRIVLTIALAHNWDIRQLDVKNAFLNGHLHENVFMEQPPRFAHPVYPHHVCHLKKALYGLRQA 1141
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.300e-18 Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
V+ K ++ K + G + K R VA+GF Q EGV + E +SP P+ SIR+L A A D +L HFDAEQAF+++++DE V I +P G V +L +++YGL QA
Sbjct: 148 VISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 258
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5K5L3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L3_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.340e-17 Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query: 73 KCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
K R VA+GF Q EGV + E +SP P+ SIR+L A A D +L HFDAEQAF+++D+DE V I +P G V +L +++YGL QA
Sbjct: 117 KARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSDLDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 206
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A4P1RVN6_LUPAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1RVN6_LUPAN) HSP 1 Score: 87.0 bits (214), Expect = 1.380e-17 Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERL--QHFPGAVGKLNKAIYGLVQA 342
V+G+K ++K K++ +G +++ K R VA+G+ Q++GV YTE +SP +IR+++ TA + +R D + AFL I E + +E P L FP V KL KA+YGL QA
Sbjct: 198 VIGSKWVFKSKLNPEGSLDRLKARLVAKGYHQVDGVDYTETFSPVIKPGTIRLIITTALVQKWPIRQLDVKNAFLHGVISETIFMEQPPGLVDPRFPNHVCKLKKALYGLKQA 310
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: UPI00142D6B46 (uncharacterized protein LOC103832953 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D6B46) HSP 1 Score: 87.0 bits (214), Expect = 1.450e-17 Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1
Query: 4 KLVVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIP-----ERLQHFP-GAVGKLNKAIYGLVQA 342
K VG K ++K K++ DG +E+ K R VA+G+ Q EG+ Y E +SP A++++LLA AAAK L D AFL D++E + + +P + + FP AV KL K++YGL QA
Sbjct: 1007 KQAVGCKWVFKIKLNADGTIERYKARLVAKGYTQQEGLDYVETFSPVAKAATVKLLLAVAAAKGWSLTQLDISNAFLNGDLEEEIYMTLPPGYSPRQGESFPPDAVCKLKKSLYGLKQA 1125
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A2N9GB87_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GB87_FAGSY) HSP 1 Score: 87.0 bits (214), Expect = 1.470e-17 Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 10 VVGTKMLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERL--QHFPGAVGKLNKAIYGLVQA 342
VVG K +YK K+ DG +E+ K R VA+GF Q++GV ++E +SP ASIR+ L AA K E+R D + AFL + + V ++ P FP V +L++A+YGL QA
Sbjct: 1041 VVGCKWVYKAKLKPDGSLERLKARLVAKGFSQVDGVDFSETFSPVIKPASIRLALTIAAVKGWEIRQLDVKNAFLHGYLSQPVYMQQPPGYVDSQFPTHVCQLSRALYGLKQA 1153
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.600e-17 Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query: 55 GKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
G + K R VA+GF Q EGV + E +SP P+ SIR+L A A D +L HFDAEQAF+++++DE V I +P G V +L +++YGL QA
Sbjct: 361 GYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 456
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.610e-17 Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query: 55 GKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLATAAAKDRELRHFDAEQAFLKTDIDEAVCIEIPERLQHFPGAVGKLNKAIYGLVQA 342
G + K R VA+GF Q EGV + E +SP P+ SIR+L A A D +L HFDAEQAF+++++DE V I +P G V +L +++YGL QA
Sbjct: 348 GYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQA 443 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5742.13303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5742.13303.1 >prot_H-paniculata_contig5742.13303.1 ID=prot_H-paniculata_contig5742.13303.1|Name=mRNA_H-paniculata_contig5742.13303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp MLYKRKVSKDGKVEKCKCRPVAQGFLQIEGVHYTEKYSPTPATASIRMLLback to top mRNA from alignment at H-paniculata_contig5742:8364..8711- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5742.13303.1 ID=mRNA_H-paniculata_contig5742.13303.1|Name=mRNA_H-paniculata_contig5742.13303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig5742:8364..8711- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5742:8364..8711- >mRNA_H-paniculata_contig5742.13303.1 ID=mRNA_H-paniculata_contig5742.13303.1|Name=mRNA_H-paniculata_contig5742.13303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig5742:8364..8711- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |