mRNA_H-paniculata_contig57398.13299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57398.13299.1
Unique NamemRNA_H-paniculata_contig57398.13299.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57398.13299.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.270e-18
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:    1 LSLELGGEEGDGVSVHFYTPKAKKVPRRRSLYGRGAWSADFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKENVP 261
             S++L    G  ++V +++P ++K  RR S YGRG WS +F  + N K   D   ES  A C+TFPSLL SGK+P+A WDAV+E+VP
Sbjct:    8 FSVDLSAGNGGELTVTWFSPASRKKCRR-SKYGRGVWSQEFLKEGN-KLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVP 92
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BLAST of mRNA_H-paniculata_contig57398.13299.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.680e-17
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 LSLELGGEEGDGVSVHFYTPKAKKVPRRRSLYGRGAWSADFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKENVP 261
            +S++L    G  ++V +++P ++K  RR S YGRG WS +F  + N K   D   ES  A C+TFPSLL SGK+P+A WDAV+E+VP
Sbjct:  255 VSVDLSAGNGGELTVTWFSPASRKKCRR-SKYGRGVWSQEFLKEGN-KLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVP 339
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BLAST of mRNA_H-paniculata_contig57398.13299.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 4.070e-17
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 LSLELGGEEGDGVSVHFYTPKAKKVPRRRSLYGRGAWSADFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKENVP 261
            +S+E GGE G  V ++++ P ++K  RR S YGRG WS  F L  + K  PD   ES  + C+TF SLL SGK+P+  W AV+E+VP
Sbjct:  210 VSVESGGENGGEVLINWFAPVSRKKCRR-SRYGRGVWSQQF-LKQDNKLTPDQSTESIKSVCFTFQSLLQSGKLPSGVWAAVEESVP 294
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BLAST of mRNA_H-paniculata_contig57398.13299.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 8.200e-17
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    1 LSLELGGEEGDGVSVHFYTPKAKKVPRRRSLYGRGAWSADFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKEN 255
            +S++L    G  ++V +++P ++K  RR S YGRG WS +F  + N K   D   ES  A C+TFPSLL SGK+P+A WDAV+E+
Sbjct:  103 VSVDLSAGNGGELTVTWFSPASRKKCRR-SKYGRGVWSQEFLKEGN-KLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEES 185
[Close]
BLAST of mRNA_H-paniculata_contig57398.13299.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.210e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 LSLELGGEEGDGVSVHFYTPKAKKVPRRRSLYGRGAWSADFRLDSNGKRVPDTDIESASAACYTFPSLLASGKVPAAAWDAVKENVP 261
            +S++L    G  ++V +++P ++K  RR S YGRG WS +  L    K   D   ES  A C+TFPSLL SGK+P+A WDAV+E+VP
Sbjct:  206 VSVDLSAGNGGELTVTWFSPASRKKCRR-SKYGRGVWSQE-NLKEGNKLTADQGTESVKAVCFTFPSLLQSGKLPSAVWDAVEESVP 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57398.13299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K4U0_9PHAE2.270e-1847.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIQ0_9PHAE3.680e-1747.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI4.070e-1747.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3A9_9PHAE8.200e-1745.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE3.210e-1645.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57398contigH-paniculata_contig57398:14..287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930618.3678548-CDS-H-paniculata_contig57398:13..2861622930618.3678548-CDS-H-paniculata_contig57398:13..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57398 14..286 +
1691481374.8426232-CDS-H-paniculata_contig57398:13..2861691481374.8426232-CDS-H-paniculata_contig57398:13..286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57398 14..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57398.13299.1prot_H-paniculata_contig57398.13299.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57398 14..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57398.13299.1

>prot_H-paniculata_contig57398.13299.1 ID=prot_H-paniculata_contig57398.13299.1|Name=mRNA_H-paniculata_contig57398.13299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
LSLELGGEEGDGVSVHFYTPKAKKVPRRRSLYGRGAWSADFRLDSNGKRV
PDTDIESASAACYTFPSLLASGKVPAAAWDAVKENVPPPLE
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mRNA from alignment at H-paniculata_contig57398:14..287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57398.13299.1 ID=mRNA_H-paniculata_contig57398.13299.1|Name=mRNA_H-paniculata_contig57398.13299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=274bp|location=Sequence derived from alignment at H-paniculata_contig57398:14..287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGCCTAGAGTTGGGCGGAGAGGAGGGGGATGGGGTTTCCGTACACTT
CTATACCCCAAAAGCCAAGAAGGTCCCACGTAGGCGATCACTGTACGGCA
GAGGCGCGTGGTCGGCAGATTTTAGGCTAGACAGCAACGGTAAGAGAGTC
CCTGACACGGACATAGAGTCAGCGAGTGCGGCCTGCTATACTTTCCCCTC
CTTGTTGGCGAGCGGTAAAGTGCCGGCAGCAGCATGGGACGCTGTTAAAG
AAAACGTTCCGCCCCCTCTAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig57398:14..287+

>mRNA_H-paniculata_contig57398.13299.1 ID=mRNA_H-paniculata_contig57398.13299.1|Name=mRNA_H-paniculata_contig57398.13299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig57398:14..287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAGCCTAGAGTTGGGCGGAGAGGAGGGGGATGGGGTTTCCGTACACTT
CTATACCCCAAAAGCCAAGAAGGTCCCACGTAGGCGATCACTGTACGGCA
GAGGCGCGTGGTCGGCAGATTTTAGGCTAGACAGCAACGGTAAGAGAGTC
CCTGACACGGACATAGAGTCAGCGAGTGCGGCCTGCTATACTTTCCCCTC
CTTGTTGGCGAGCGGTAAAGTGCCGGCAGCAGCATGGGACGCTGTTAAAG
AAAACGTTCCGCCCCCTCTAGAGTTGAGCCTAGAGTTGGGCGGAGAGGAG
GGGGATGGGGTTTCCGTACACTTCTATACCCCAAAAGCCAAGAAGGTCCC
ACGTAGGCGATCACTGTACGGCAGAGGCGCGTGGTCGGCAGATTTTAGGC
TAGACAGCAACGGTAAGAGAGTCCCTGACACGGACATAGAGTCAGCGAGT
GCGGCCTGCTATACTTTCCCCTCCTTGTTGGCGAGCGGTAAAGTGCCGGC
AGCAGCATGGGACGCTGTTAAAGAAAACGTTCCGCCCCCTCTAGAG
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