mRNA_H-paniculata_contig57392.13298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57392.13298.1
Unique NamemRNA_H-paniculata_contig57392.13298.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A6H5K8F1_9PHAE (VDE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8F1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 9.990e-32
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   28 QVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHYR 201
            QVHFFNSP PGKLVGKLNWRIKEPDGEFFTRDVVQ F QDP NPAHL+NKDNEYLHYR
Sbjct:  173 QVHFFNSPKPGKLVGKLNWRIKEPDGEFFTRDVVQTFDQDPKNPAHLVNKDNEYLHYR 230
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A7R9W8D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8D9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.020e-28
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   28 QVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHY 198
            QVHFF   SPGK  GKLNWRI+EPDGEFFTRD +Q+F QDP NPAHLIN DNEYLHY
Sbjct:    8 QVHFFTETSPGKFFGKLNWRIQEPDGEFFTRDALQRFVQDPENPAHLINHDNEYLHY 64
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: B8C775_THAPS (Diadinoxanthin de-epoxidase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C775_THAPS)

HSP 1 Score: 108 bits (269), Expect = 3.570e-26
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   28 QVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHYR 201
            QVHFF   +PGK VGKLNWRI+EPDGEFFTRD VQ+F QDP+NPAHLIN DNEYLHY+
Sbjct:  224 QVHFFTETAPGKFVGKLNWRIEEPDGEFFTRDAVQEFVQDPNNPAHLINHDNEYLHYQ 281
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A6V0W7S4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0W7S4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.650e-25
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   28 QVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHYR 201
            QVHFF    PGK  GKLNWRI+EPDGEFFTRD +Q+F QDP NPAHLIN DNEYLHY+
Sbjct:  215 QVHFFTETEPGKFFGKLNWRIEEPDGEFFTRDAIQEFYQDPKNPAHLINHDNEYLHYQ 272
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A7S4NGD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGD3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.640e-24
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   28 QVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHY 198
            QVHFF   +PGK  GKLNWRI+EPDGEF+TRD +Q+F QDP NPAHL+N DNEYLHY
Sbjct:  228 QVHFFTETAPGKFFGKLNWRIQEPDGEFYTRDALQRFVQDPENPAHLVNHDNEYLHY 284
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A7S4AXJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXJ6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.900e-24
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   28 QVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHYR 201
            QVHFF   +PGK  GKLNWRI+EPDGEFFTRD VQ+F QDP  P HLIN DNEYLHY+
Sbjct:  220 QVHFFTETAPGKFYGKLNWRIEEPDGEFFTRDAVQEFVQDPEQPGHLINHDNEYLHYK 277
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A1E7FV42_9STRA (Violaxanthin de-epoxidase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV42_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.030e-24
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 PLSHVCFCRQVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHYR 201
            PL  +  C QVHFF   +PGK  GKLNWRI+EPDGEFF RD VQ+F QDP  PAHL+N DNEYLHY+
Sbjct:  220 PLFDIFPC-QVHFFTETAPGKFYGKLNWRIEEPDGEFFNRDAVQEFIQDPKQPAHLVNHDNEYLHYQ 285
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A448YW88_9STRA (VDE domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW88_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.430e-24
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   28 QVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHYR 201
            QVHFF   +PGK  GKLNWRI+EPDGEFFTRD +Q+F QDP  P HLIN DNEYLHY+
Sbjct:  219 QVHFFTETAPGKFFGKLNWRIEEPDGEFFTRDAIQEFVQDPEQPGHLINHDNEYLHYQ 276
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A7S1DA52_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DA52_CYCTE)

HSP 1 Score: 101 bits (251), Expect = 8.210e-24
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 PLSHVCFCRQVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHY 198
            PL  +  C QVHFF   SPGK  GKLNWRI+EPDGEFF RD +Q+F QDP  P HLIN DNEYLHY
Sbjct:  192 PLFDIFPC-QVHFFTETSPGKFFGKLNWRIEEPDGEFFNRDALQRFVQDPKQPGHLINHDNEYLHY 256
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BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Match: A0A7S2EKH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EKH5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.070e-23
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 PLSHVCFCRQVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDPSNPAHLINKDNEYLHY 198
            PL  +  C QVHFF   SPGK  GKLNWRI EPDGEFFTRD +Q+F QDP  P HL+N DNEYLHY
Sbjct:  244 PLFDIFPC-QVHFFTETSPGKFFGKLNWRIVEPDGEFFTRDALQRFVQDPKQPGHLVNHDNEYLHY 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57392.13298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8F1_9PHAE9.990e-3291.38VDE domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9W8D9_9STRA6.020e-2878.95Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
B8C775_THAPS3.570e-2679.31Diadinoxanthin de-epoxidase n=1 Tax=Thalassiosira ... [more]
A0A6V0W7S4_9STRA3.650e-2575.86Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4NGD3_9STRA2.640e-2473.68Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4AXJ6_9STRA3.900e-2474.14Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FV42_9STRA6.030e-2467.16Violaxanthin de-epoxidase n=1 Tax=Fragilariopsis c... [more]
A0A448YW88_9STRA7.430e-2472.41VDE domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S1DA52_CYCTE8.210e-2468.18Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2EKH5_9STRA1.070e-2368.18Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57392contigH-paniculata_contig57392:261..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue4.5e-26
Seed eggNOG ortholog2880.D7FY70
Preferred nameVDE
KEGG rclassRC01624,RC03037
KEGG koko:K09839
KEGG ReactionR07178,R07179,R10055
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009507,GO:0009534,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010028,GO:0015994,GO:0016108,GO:0016116,GO:0016122,GO:0016491,GO:0019752,GO:0019904,GO:0031976,GO:0031977,GO:0031984,GO:0032787,GO:0033013,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046422,GO:0046483,GO:0050896,GO:0051186,GO:0055114,GO:0071704,GO:1901360,GO:1901564
EggNOG free text desc.violaxanthin de-epoxidase activity
EggNOG OGs28K1H@1,2QSFY@2759
EC1.23.5.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930618.283862-CDS-H-paniculata_contig57392:260..4611622930618.283862-CDS-H-paniculata_contig57392:260..461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57392 261..461 +
1691481374.828938-CDS-H-paniculata_contig57392:260..4611691481374.828938-CDS-H-paniculata_contig57392:260..461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57392 261..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57392.13298.1prot_H-paniculata_contig57392.13298.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57392 261..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57392.13298.1

>prot_H-paniculata_contig57392.13298.1 ID=prot_H-paniculata_contig57392.13298.1|Name=mRNA_H-paniculata_contig57392.13298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
PLSHVCFCRQVHFFNSPSPGKLVGKLNWRIKEPDGEFFTRDVVQKFQQDP
SNPAHLINKDNEYLHYR
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mRNA from alignment at H-paniculata_contig57392:261..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57392.13298.1 ID=mRNA_H-paniculata_contig57392.13298.1|Name=mRNA_H-paniculata_contig57392.13298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig57392:261..461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTGTCCCATGTCTGCTTTTGCCGACAGGTCCACTTCTTCAACAGCCC
TTCTCCGGGGAAGCTGGTGGGCAAGCTGAACTGGCGCATCAAGGAGCCCG
ACGGAGAGTTTTTCACGCGTGACGTGGTGCAGAAGTTTCAGCAAGATCCC
TCAAACCCAGCTCACCTTATCAACAAGGACAACGAGTATCTCCATTACAG
G
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Coding sequence (CDS) from alignment at H-paniculata_contig57392:261..461+

>mRNA_H-paniculata_contig57392.13298.1 ID=mRNA_H-paniculata_contig57392.13298.1|Name=mRNA_H-paniculata_contig57392.13298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig57392:261..461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTGTCCCATGTCTGCTTTTGCCGACAGGTCCACTTCTTCAACAGCCC
TTCTCCGGGGAAGCTGGTGGGCAAGCTGAACTGGCGCATCAAGGAGCCCG
ACGGAGAGTTTTTCACGCGTGACGTGGTGCAGAAGTTTCAGCAAGATCCC
TCAAACCCAGCTCACCTTATCAACAAGGACAACGAGTATCTCCATTACAG
GCCCCTGTCCCATGTCTGCTTTTGCCGACAGGTCCACTTCTTCAACAGCC
CTTCTCCGGGGAAGCTGGTGGGCAAGCTGAACTGGCGCATCAAGGAGCCC
GACGGAGAGTTTTTCACGCGTGACGTGGTGCAGAAGTTTCAGCAAGATCC
CTCAAACCCAGCTCACCTTATCAACAAGGACAACGAGTATCTCCATTACA
GG
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